RLG00000020432

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014396
Physical Location & Seq
Forward (+)
64925049 .. 64932675
7627 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020432

Sequence Viewer

Length: 942 bp
ATGGCATCAGTCATGGCTTCCCAGGCTCTCTTCTCCCAAACCCCAATCCTAATCAGACCCCCCACCCGCCCCCCCAAATTCAAATCCTTCTCCTCTCCCTCTCCCTCCCTCGTCCACATTCGCACTCCCAATCCCAAACTCCCCAACCTCCGTCTCTCTCTCCGCCGACCCCTCTGCATCTCCGCCACCTCCCAAACCCTAACCCCAGCGCCGCCGCCTTCTCCGCTCTCCCACGCCCCTACTCGCACTCTCACCACCCTCTTCGCCGTAACCCTAGCTGCCGTCCGCACCGTCTCCCTCCCCGTCTTCAAATTCGCCTCCCAACACGCCCCCGCCGTCGCCTACTCCGCCGGACCTCTCTTCTTCGCCGCCCTCGGTGACCGCCCCAGCGGGTACCTCAACACTCCCCTCACGGTCGTCGCCGCCGGGCTCTCCAAGTGGCTGGACATCTACAGCGGCGTGCTCATGGTTAGGGTTCTGCTCAGCTGGTTCCCCAATATTCCCTGGGACCGGCAGCCGCTCTCCGCCATCCGGGACCTCTGTGATCCCTACCTCAACCTCTTCCGCAACATCATTCCTCCGATTTTCGACACCTTGGACGTGAGCCCCCTCCTGGCTTTCGCAGTGTTGGGCACGCTTGGCTCGATCCTCAACAACAGTAGGGGAATTGGCAAAGATAGTAATCCACAGGAGCATTGCATGGCTAGGAAATTTGATTACTGTTTTGCTTGGGAATGTTCATCTTCTTACATCAGTTATGCACTGGACAGCTTGATGAAGAAGGGTATTCATAGAATCATTACTGTTATTATTACCACTTCAACCACTGTCTTTGATCCATTTTCAGCAGCTAAAGCCCTTCTTCTTCTTCTTCTTCTTCCTCTTCAGATCTTCCACATTGCCTTGGTTCTGGTTCAAAATGGTGATCTGGTAGGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

314

Amino Acids

34.14

Weight (kDa)

9.8

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 148 - 216 2.4e-17 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27990
fragaria_vesca FvH4_6g37080
malus_domestica MD09G1163500.v1.1 MD17G1164100.v1.1
prunus_persica Prupe.3G021000_v2.0.a1
pyrus_communis pycom09g08100 pycom17g15710
rosa_chinensis RchiOBHm_Chr2g0149631
rosa_laevigata RLG00000020432
rosa_multiflora Rmu_sc0014307.1_g000002
rosa_roxburghii Rroxscaffold_2G00097850
rosa_rugosa Rorug02G0413600
rosa_samantha Rh2AG474000 Rh2BG485800 Rh2CG459900 Rh2DG495100
rosa_wichuraiana Rw2G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 393
AccB1I GGYRCC 1 cut(s) 393
AccBSI CCGCTC 2 cut(s) 226, 520
AclWI GGATC 3 cut(s) 539, 640, 830
AcsI RAATTY 3 cut(s) 77, 311, 710
AcuI CTGAAG 1 cut(s) 869
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 3 cut(s) 510, 531, 613
AgsI TTSAA 4 cut(s) 82, 310, 822, 917
AjiI CACGTC 1 cut(s) 601
AjnI CCWGG 3 cut(s) 21, 503, 612
AluBI AGCT 4 cut(s) 278, 486, 771, 851
AluI AGCT 4 cut(s) 278, 486, 771, 851
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 2 cut(s) 158, 298
AlwI GGATC 3 cut(s) 539, 640, 830
ApeKI GCWGC 3 cut(s) 278, 514, 848
ApoI RAATTY 3 cut(s) 77, 311, 710
Asp718I GGTACC 1 cut(s) 393
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 3 cut(s) 353, 508, 535
AsuC2I CCSGG 2 cut(s) 427, 533
AsuHPI GGTGA 3 cut(s) 244, 389, 935
AvaII GGWCC 3 cut(s) 353, 508, 535
BaeGI GKGCMC 1 cut(s) 635
BanI GGYRCC 1 cut(s) 393
BanII GRGCYC 2 cut(s) 432, 608
BbsI GAAGAC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 3 cut(s) 265, 526, 860
BccI CCATC 1 cut(s) 536
BceAI ACGGC 3 cut(s) 251, 266, 320
BcgI CGANNNNNNTGC 2 cut(s) 156, 190
BciT130I CCWGG 3 cut(s) 23, 505, 614
BcnI CCSGG 2 cut(s) 427, 533
BcoDI GTCTC 2 cut(s) 158, 298
BfaI CTAG 2 cut(s) 275, 705
BfmI CTRYAG 1 cut(s) 451
BfoI RGCGCY 1 cut(s) 212
BglII AGATCT 1 cut(s) 888
BisI GCNGC 9 cut(s) 212, 215, 279, 369, 423, 457, 515, 518, 849
BlpI GCTNAGC 1 cut(s) 482
BlsI GCNGC 9 cut(s) 213, 216, 280, 370, 424, 458, 516, 519, 850
Bme1390I CCNGG 5 cut(s) 23, 427, 505, 533, 614
Bme18I GGWCC 3 cut(s) 353, 508, 535
BmgBI CACGTC 1 cut(s) 601
BmgT120I GGNCC 3 cut(s) 353, 508, 535
BmiI GGNNCC 4 cut(s) 395, 491, 509, 536
BmrFI CCNGG 5 cut(s) 23, 427, 505, 533, 614
BmsI GCATC 2 cut(s) 14, 186
BpiI GAAGAC 1 cut(s) 298
Bpu1102I GCTNAGC 1 cut(s) 482
BpuMI CCSGG 2 cut(s) 427, 533
BsaBI GATNNNNATC 1 cut(s) 681
BsaJI CCNNGG 6 cut(s) 21, 373, 503, 504, 594, 903
Bsc4I CCNNNNNNNGG 3 cut(s) 510, 531, 613
Bse118I RCCGGY 1 cut(s) 510
Bse1I ACTGG 1 cut(s) 768
Bse3DI GCAATG 2 cut(s) 694, 897
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 3 cut(s) 23, 505, 614
BseDI CCNNGG 6 cut(s) 21, 373, 503, 504, 594, 903
BseGI GGATG 1 cut(s) 528
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 3 cut(s) 510, 531, 613
BseMI GCAATG 2 cut(s) 694, 897
BseMII CTCAG 1 cut(s) 496
BseNI ACTGG 1 cut(s) 768
BseRI GAGGAG 1 cut(s) 82
BseSI GKGCMC 1 cut(s) 635
BseXI GCAGC 3 cut(s) 265, 526, 860
BseYI CCCAGC 2 cut(s) 205, 386
Bsh1285I CGRYCG 1 cut(s) 417
BshNI GGYRCC 1 cut(s) 393
BsiEI CGRYCG 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 4 cut(s) 351, 426, 511, 532
BslFI GGGAC 2 cut(s) 521, 548
BslI CCNNNNNNNGG 3 cut(s) 510, 531, 613
BsmAI GTCTC 2 cut(s) 158, 298
BsmBI CGTCTC 2 cut(s) 158, 298
BsmFI GGGAC 2 cut(s) 521, 548
Bsp1286I GDGCHC 4 cut(s) 432, 465, 608, 635
Bsp143I GATC 5 cut(s) 544, 645, 835, 888, 925
Bsp1720I GCTNAGC 1 cut(s) 482
BspCNI CTCAG 1 cut(s) 495
BspLI GGNNCC 4 cut(s) 395, 491, 509, 536
BspPI GGATC 3 cut(s) 539, 640, 830
BspT107I GGYRCC 1 cut(s) 393
BsrBI CCGCTC 2 cut(s) 226, 520
BsrDI GCAATG 2 cut(s) 694, 897
BsrFI RCCGGY 1 cut(s) 510
BsrI ACTGG 1 cut(s) 768
BssAI RCCGGY 1 cut(s) 510
BssECI CCNNGG 6 cut(s) 21, 373, 503, 504, 594, 903
BssMI GATC 5 cut(s) 544, 645, 835, 888, 925
BssT1I CCWWGG 2 cut(s) 594, 903
Bst2UI CCWGG 3 cut(s) 23, 505, 614
Bst4CI ACNGT 6 cut(s) 292, 415, 659, 722, 805, 829
Bst6I CTCTTC 5 cut(s) 35, 266, 365, 566, 888
BstC8I GCNNGC 2 cut(s) 461, 635
BstDEI CTNAG 1 cut(s) 482
BstEII GGTNACC 1 cut(s) 377
BstF5I GGATG 1 cut(s) 528
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 5 cut(s) 547, 648, 838, 891, 928
BstMAI GTCTC 2 cut(s) 158, 298
BstMBI GATC 5 cut(s) 544, 645, 835, 888, 925
BstMCI CGRYCG 1 cut(s) 417
BstMWI GCNNNNNNNGC 5 cut(s) 23, 223, 347, 639, 854
BstNI CCWGG 3 cut(s) 23, 505, 614
BstPI GGTNACC 1 cut(s) 377
BstSCI CCNGG 5 cut(s) 21, 425, 503, 531, 612
BstSFI CTRYAG 1 cut(s) 451
BstSLI GKGCMC 1 cut(s) 635
BstV1I GCAGC 3 cut(s) 265, 526, 860
BstV2I GAAGAC 1 cut(s) 298
BstX2I RGATCY 1 cut(s) 888
BstXI CCANNNNNNTGG 1 cut(s) 442
BstYI RGATCY 1 cut(s) 888
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 1 cut(s) 528
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 3 cut(s) 630, 761, 825
Cac8I GCNNGC 2 cut(s) 461, 635
CfoI GCGC 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 510
Cfr13I GGNCC 3 cut(s) 353, 508, 535
Csp6I GTAC 1 cut(s) 394
CspCI CAANNNNNGTGG 2 cut(s) 814, 849
CviAII CATG 3 cut(s) 13, 466, 700
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 1 cut(s) 482
DpnI GATC 5 cut(s) 546, 647, 837, 890, 927
DpnII GATC 5 cut(s) 544, 645, 835, 888, 925
Eam1104I CTCTTC 5 cut(s) 35, 266, 365, 566, 888
EarI CTCTTC 5 cut(s) 35, 266, 365, 566, 888
EciI GGCGGA 4 cut(s) 152, 172, 337, 514
Eco130I CCWWGG 2 cut(s) 594, 903
Eco24I GRGCYC 2 cut(s) 432, 608
Eco47I GGWCC 3 cut(s) 353, 508, 535
Eco57I CTGAAG 1 cut(s) 869
Eco91I GGTNACC 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 535
EcoO65I GGTNACC 1 cut(s) 377
EcoRII CCWGG 3 cut(s) 21, 503, 612
EcoT14I CCWWGG 2 cut(s) 594, 903
EcoT38I GRGCYC 2 cut(s) 432, 608
ErhI CCWWGG 2 cut(s) 594, 903
Esp3I CGTCTC 2 cut(s) 158, 298
FaeI CATG 3 cut(s) 16, 469, 703
FaiI YATR 5 cut(s) 14, 467, 701, 759, 792
FalI AAGNNNNNCTT 2 cut(s) 846, 878
FaqI GGGAC 2 cut(s) 521, 548
FatI CATG 3 cut(s) 12, 465, 699
FauI CCCGC 3 cut(s) 74, 340, 383
Fnu4HI GCNGC 9 cut(s) 212, 215, 279, 369, 423, 457, 515, 518, 849
FokI GGATG 1 cut(s) 515
FriOI GRGCYC 2 cut(s) 432, 608
Fsp4HI GCNGC 9 cut(s) 212, 215, 279, 369, 423, 457, 515, 518, 849
FspBI CTAG 2 cut(s) 275, 705
GlaI GCGC 1 cut(s) 210
GluI GCNGC 9 cut(s) 212, 215, 279, 369, 423, 457, 515, 518, 849
GsaI CCCAGC 2 cut(s) 209, 390
HaeII RGCGCY 1 cut(s) 212
HapII CCGG 4 cut(s) 351, 426, 511, 532
HhaI GCGC 1 cut(s) 211
Hin1II CATG 3 cut(s) 16, 469, 703
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HinfI GANTC 1 cut(s) 795
HpaII CCGG 4 cut(s) 351, 426, 511, 532
HphI GGTGA 3 cut(s) 244, 389, 935
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 3 cut(s) 56, 582, 888
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 2 cut(s) 341, 422
HpyAV CCTTC 4 cut(s) 97, 228, 775, 869
HpyCH4III ACNGT 6 cut(s) 292, 415, 659, 722, 805, 829
HpyCH4IV ACGT 1 cut(s) 600
HpyCH4V TGCA 3 cut(s) 177, 699, 761
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 223, 347, 639, 854
HpyF3I CTNAG 1 cut(s) 482
HpySE526I ACGT 1 cut(s) 600
Hsp92II CATG 3 cut(s) 16, 469, 703
HspAI GCGC 1 cut(s) 209
KpnI GGTACC 1 cut(s) 397
Kzo9I GATC 5 cut(s) 544, 645, 835, 888, 925
LmnI GCTCC 1 cut(s) 691
Lsp1109I GCAGC 3 cut(s) 265, 526, 860
LweI GCATC 2 cut(s) 14, 186
MaeI CTAG 2 cut(s) 275, 705
MaeII ACGT 1 cut(s) 600
MaeIII GTNAC 2 cut(s) 268, 377
MalI GATC 5 cut(s) 546, 647, 837, 890, 927
MbiI CCGCTC 2 cut(s) 226, 520
MboI GATC 5 cut(s) 544, 645, 835, 888, 925
MflI RGATCY 1 cut(s) 888
MhlI GDGCHC 4 cut(s) 432, 465, 608, 635
MluCI AATT 4 cut(s) 77, 311, 666, 710
MspA1I CMGCKG 3 cut(s) 390, 456, 486
MspI CCGG 4 cut(s) 351, 426, 511, 532
MspR9I CCNGG 5 cut(s) 23, 427, 505, 533, 614
MvaI CCWGG 3 cut(s) 23, 505, 614
MwoI GCNNNNNNNGC 5 cut(s) 23, 223, 347, 639, 854
NciI CCSGG 2 cut(s) 427, 533
NdeII GATC 5 cut(s) 544, 645, 835, 888, 925
NlaIII CATG 3 cut(s) 16, 469, 703
NlaIV GGNNCC 4 cut(s) 395, 491, 509, 536
NmuCI GTSAC 1 cut(s) 377
PasI CCCWGGG 1 cut(s) 504
PcsI WCGNNNNNNNCGW 2 cut(s) 333, 641
PfeI GAWTC 1 cut(s) 795
PfoI TCCNGGA 1 cut(s) 531
PkrI GCNGC 9 cut(s) 213, 216, 280, 370, 424, 458, 516, 519, 850
PpuMI RGGWCCY 1 cut(s) 535
Psp5II RGGWCCY 1 cut(s) 535
Psp6I CCWGG 3 cut(s) 21, 503, 612
PspEI GGTNACC 1 cut(s) 377
PspFI CCCAGC 2 cut(s) 205, 386
PspGI CCWGG 3 cut(s) 21, 503, 612
PspN4I GGNNCC 4 cut(s) 395, 491, 509, 536
PspPI GGNCC 3 cut(s) 353, 508, 535
PspPPI RGGWCCY 1 cut(s) 535
PsuI RGATCY 1 cut(s) 888
PvuII CAGCTG 1 cut(s) 486
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SatI GCNGC 9 cut(s) 212, 215, 279, 369, 423, 457, 515, 518, 849
Sau3AI GATC 5 cut(s) 544, 645, 835, 888, 925
Sau96I GGNCC 3 cut(s) 353, 508, 535
ScrFI CCNGG 5 cut(s) 23, 427, 505, 533, 614
SduI GDGCHC 4 cut(s) 432, 465, 608, 635
SfaNI GCATC 2 cut(s) 14, 186
SfcI CTRYAG 1 cut(s) 451
SinI GGWCC 3 cut(s) 353, 508, 535
Sse9I AATT 4 cut(s) 77, 311, 666, 710
SspI AATATT 1 cut(s) 499
SspMI CTAG 2 cut(s) 275, 705
StyD4I CCNGG 5 cut(s) 21, 425, 503, 531, 612
StyI CCWWGG 2 cut(s) 594, 903
TaaI ACNGT 6 cut(s) 292, 415, 659, 722, 805, 829
TaiI ACGT 1 cut(s) 603
TaqI TCGA 2 cut(s) 588, 644
TasI AATT 4 cut(s) 77, 311, 666, 710
TauI GCSGC 6 cut(s) 214, 217, 371, 425, 459, 520
TfiI GAWTC 1 cut(s) 795
TscAI CASTG 3 cut(s) 630, 768, 832
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 3 cut(s) 278, 514, 848
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 729, 779, 791
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 3 cut(s) 630, 768, 832
VpaK11BI GGWCC 3 cut(s) 353, 508, 535
XapI RAATTY 3 cut(s) 77, 311, 710
XspI CTAG 2 cut(s) 275, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.