Rroxscaffold_2G00097850

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014396
Physical Location & Seq
Reverse (-)
19056211 .. 19056891
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00097850.1

Sequence Viewer

Length: 681 bp
ATGGCATCAGTCATGGCTTCCCAGGCTCTCTTCTCCCAAACCCCAATCCTAATCAGACCCCCCACCCGCACCCGCACCCCCAAATTCAAATCCTTCTCCTCTCCTTCTCCCTCCCTCGTCCACATTCGCACTCCCAATCCCAACCTCCCCAACCTCCGTCTCTCTCTCCGCCGACCCCTCTGCATCTCCGCCGCCACCCAAACCCTAACCCCACCGCCGCCGCCTTCTCCGCTCTCCCACGCCCCCACTCGCACTCTCACCACCCTCTTCGCCTTAACCCTAGCCGCCTTCCGCACCGTCTCCCTCCCCGTCTTCAAATTCGCCTCCCAACACGCCCCCGCCGTCGCCTCCACCGCCGGCCCCCTCTTCTTCGCCGCCCTCGGTGACCGCCCCAGCGGCTACCTCAACACTCCCCTCACGGTCGTCGCCGCCGGGCTCTCCAAGTGGCTGGACATCTACAGCGGCGTTCTCATGGTTCGGGTTCTGCTCAGCTGGTTCCCCAATATTCCCTGGGACCGGCAGCCGCTCTCCGCCATCCGGGACCTCTGTGATCCCTACCTCAACCTCTTCCGCAACATCATTCCTCCGATTTTCGACACCTTGGACGTGAGCCCCCTCCTGGCATTCGCAGTGTTGGGCACGCTTGGCTCGATCCTCAACAACAGTAGGGGAATGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

226

Amino Acids

24.58

Weight (kDa)

11.08

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 150 - 218 1.3e-17 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27990
fragaria_vesca FvH4_6g37080
malus_domestica MD09G1163500.v1.1 MD17G1164100.v1.1
prunus_persica Prupe.3G021000_v2.0.a1
pyrus_communis pycom09g08100 pycom17g15710
rosa_chinensis RchiOBHm_Chr2g0149631
rosa_laevigata RLG00000020432
rosa_multiflora Rmu_sc0014307.1_g000002
rosa_roxburghii Rroxscaffold_2G00097850
rosa_rugosa Rorug02G0413600
rosa_samantha Rh2AG474000 Rh2BG485800 Rh2CG459900 Rh2DG495100
rosa_wichuraiana Rw2G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 232, 526
AclWI GGATC 2 cut(s) 545, 646
AcsI RAATTY 2 cut(s) 83, 317
AfaI GTAC 1 cut(s) 677
AfiI CCNNNNNNNGG 3 cut(s) 516, 537, 619
AgsI TTSAA 2 cut(s) 88, 316
AjiI CACGTC 1 cut(s) 607
AjnI CCWGG 3 cut(s) 21, 509, 618
AluBI AGCT 1 cut(s) 492
AluI AGCT 1 cut(s) 492
Alw26I GTCTC 2 cut(s) 164, 304
AlwI GGATC 2 cut(s) 545, 646
AoxI GGCC 1 cut(s) 358
ApeKI GCWGC 1 cut(s) 520
ApoI RAATTY 2 cut(s) 83, 317
AspS9I GGNCC 3 cut(s) 359, 514, 541
AsuC2I CCSGG 2 cut(s) 433, 539
AsuHPI GGTGA 2 cut(s) 250, 395
AvaII GGWCC 2 cut(s) 514, 541
BaeGI GKGCMC 1 cut(s) 641
BanII GRGCYC 2 cut(s) 438, 614
BbsI GAAGAC 1 cut(s) 304
BbvI GCAGC 1 cut(s) 532
BccI CCATC 1 cut(s) 542
BceAI ACGGC 1 cut(s) 326
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BciT130I CCWGG 3 cut(s) 23, 511, 620
BcnI CCSGG 2 cut(s) 433, 539
BcoDI GTCTC 2 cut(s) 164, 304
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 457
BglI GCCNNNNNGGC 1 cut(s) 396
BlpI GCTNAGC 1 cut(s) 488
Bme1390I CCNGG 5 cut(s) 23, 433, 511, 539, 620
Bme18I GGWCC 2 cut(s) 514, 541
BmgBI CACGTC 1 cut(s) 607
BmgT120I GGNCC 3 cut(s) 359, 514, 541
BmiI GGNNCC 4 cut(s) 361, 497, 515, 542
BmrFI CCNGG 5 cut(s) 23, 433, 511, 539, 620
BmsI GCATC 2 cut(s) 14, 192
BpiI GAAGAC 1 cut(s) 304
Bpu1102I GCTNAGC 1 cut(s) 488
BpuMI CCSGG 2 cut(s) 433, 539
BsaJI CCNNGG 5 cut(s) 21, 379, 509, 510, 600
Bsc4I CCNNNNNNNGG 3 cut(s) 516, 537, 619
Bse118I RCCGGY 2 cut(s) 356, 516
BseBI CCWGG 3 cut(s) 23, 511, 620
BseDI CCNNGG 5 cut(s) 21, 379, 509, 510, 600
BseGI GGATG 1 cut(s) 534
BseLI CCNNNNNNNGG 3 cut(s) 516, 537, 619
BseMII CTCAG 1 cut(s) 502
BseRI GAGGAG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 641
BseXI GCAGC 1 cut(s) 532
BseYI CCCAGC 1 cut(s) 392
Bsh1285I CGRYCG 1 cut(s) 423
BshFI GGCC 1 cut(s) 360
BsiEI CGRYCG 1 cut(s) 423
BsiSI CCGG 4 cut(s) 357, 432, 517, 538
BslFI GGGAC 2 cut(s) 527, 554
BslI CCNNNNNNNGG 3 cut(s) 516, 537, 619
BsmAI GTCTC 2 cut(s) 164, 304
BsmBI CGTCTC 2 cut(s) 164, 304
BsmFI GGGAC 2 cut(s) 527, 554
BsmI GAATGC 1 cut(s) 623
BsnI GGCC 1 cut(s) 360
Bsp1286I GDGCHC 3 cut(s) 438, 614, 641
Bsp143I GATC 2 cut(s) 550, 651
Bsp1720I GCTNAGC 1 cut(s) 488
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 1 cut(s) 501
BspLI GGNNCC 4 cut(s) 361, 497, 515, 542
BspPI GGATC 2 cut(s) 545, 646
BsrBI CCGCTC 2 cut(s) 232, 526
BsrFI RCCGGY 2 cut(s) 356, 516
BssAI RCCGGY 2 cut(s) 356, 516
BssECI CCNNGG 5 cut(s) 21, 379, 509, 510, 600
BssMI GATC 2 cut(s) 550, 651
BssT1I CCWWGG 1 cut(s) 600
Bst2UI CCWGG 3 cut(s) 23, 511, 620
Bst4CI ACNGT 3 cut(s) 298, 421, 665
Bst6I CTCTTC 4 cut(s) 35, 272, 371, 572
BstC8I GCNNGC 2 cut(s) 358, 641
BstDEI CTNAG 1 cut(s) 488
BstEII GGTNACC 1 cut(s) 383
BstF5I GGATG 1 cut(s) 534
BstKTI GATC 2 cut(s) 553, 654
BstMAI GTCTC 2 cut(s) 164, 304
BstMBI GATC 2 cut(s) 550, 651
BstMCI CGRYCG 1 cut(s) 423
BstMWI GCNNNNNNNGC 5 cut(s) 23, 229, 353, 396, 645
BstNI CCWGG 3 cut(s) 23, 511, 620
BstPI GGTNACC 1 cut(s) 383
BstSCI CCNGG 5 cut(s) 21, 431, 509, 537, 618
BstSFI CTRYAG 1 cut(s) 457
BstSLI GKGCMC 1 cut(s) 641
BstV1I GCAGC 1 cut(s) 532
BstV2I GAAGAC 1 cut(s) 304
BstXI CCANNNNNNTGG 1 cut(s) 448
BsuRI GGCC 1 cut(s) 360
BtrI CACGTC 1 cut(s) 607
BtsCI GGATG 1 cut(s) 534
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 1 cut(s) 636
Cac8I GCNNGC 2 cut(s) 358, 641
Cfr10I RCCGGY 2 cut(s) 356, 516
Cfr13I GGNCC 3 cut(s) 359, 514, 541
Csp6I GTAC 1 cut(s) 676
CviAII CATG 2 cut(s) 13, 472
CviQI GTAC 1 cut(s) 676
DdeI CTNAG 1 cut(s) 488
DpnI GATC 2 cut(s) 552, 653
DpnII GATC 2 cut(s) 550, 651
Eam1104I CTCTTC 4 cut(s) 35, 272, 371, 572
EarI CTCTTC 4 cut(s) 35, 272, 371, 572
EciI GGCGGA 3 cut(s) 158, 178, 520
Eco130I CCWWGG 1 cut(s) 600
Eco24I GRGCYC 2 cut(s) 438, 614
Eco47I GGWCC 2 cut(s) 514, 541
Eco91I GGTNACC 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 541
EcoO65I GGTNACC 1 cut(s) 383
EcoRII CCWGG 3 cut(s) 21, 509, 618
EcoT14I CCWWGG 1 cut(s) 600
EcoT38I GRGCYC 2 cut(s) 438, 614
ErhI CCWWGG 1 cut(s) 600
Esp3I CGTCTC 2 cut(s) 164, 304
FaeI CATG 2 cut(s) 16, 475
FaiI YATR 2 cut(s) 14, 473
FaqI GGGAC 2 cut(s) 527, 554
FatI CATG 2 cut(s) 12, 471
FauI CCCGC 3 cut(s) 74, 80, 346
FokI GGATG 1 cut(s) 521
FriOI GRGCYC 2 cut(s) 438, 614
FspBI CTAG 1 cut(s) 281
GsaI CCCAGC 1 cut(s) 396
HaeIII GGCC 1 cut(s) 360
HapII CCGG 4 cut(s) 357, 432, 517, 538
Hin1II CATG 2 cut(s) 16, 475
HpaII CCGG 4 cut(s) 357, 432, 517, 538
HphI GGTGA 2 cut(s) 250, 395
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 56, 588
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 2 cut(s) 347, 428
HpyAV CCTTC 4 cut(s) 103, 114, 234, 298
HpyCH4III ACNGT 3 cut(s) 298, 421, 665
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 229, 353, 396, 645
HpyF3I CTNAG 1 cut(s) 488
HpySE526I ACGT 1 cut(s) 606
Hsp92II CATG 2 cut(s) 16, 475
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Kzo9I GATC 2 cut(s) 550, 651
Lsp1109I GCAGC 1 cut(s) 532
LweI GCATC 2 cut(s) 14, 192
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 1 cut(s) 383
MalI GATC 2 cut(s) 552, 653
MbiI CCGCTC 2 cut(s) 232, 526
MboI GATC 2 cut(s) 550, 651
MboII GAAGA 6 cut(s) 22, 259, 304, 358, 361, 559
MhlI GDGCHC 3 cut(s) 438, 614, 641
MluCI AATT 2 cut(s) 83, 317
MroNI GCCGGC 1 cut(s) 356
MseI TTAA 1 cut(s) 275
MspA1I CMGCKG 3 cut(s) 396, 462, 492
MspI CCGG 4 cut(s) 357, 432, 517, 538
MspR9I CCNGG 5 cut(s) 23, 433, 511, 539, 620
Mva1269I GAATGC 1 cut(s) 623
MvaI CCWGG 3 cut(s) 23, 511, 620
MwoI GCNNNNNNNGC 5 cut(s) 23, 229, 353, 396, 645
NaeI GCCGGC 1 cut(s) 358
NciI CCSGG 2 cut(s) 433, 539
NdeII GATC 2 cut(s) 550, 651
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 2 cut(s) 16, 475
NlaIV GGNNCC 4 cut(s) 361, 497, 515, 542
NmuCI GTSAC 1 cut(s) 383
PasI CCCWGGG 1 cut(s) 510
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 647
PctI GAATGC 1 cut(s) 623
PdiI GCCGGC 1 cut(s) 358
PfoI TCCNGGA 1 cut(s) 537
PpuMI RGGWCCY 1 cut(s) 541
Psp5II RGGWCCY 1 cut(s) 541
Psp6I CCWGG 3 cut(s) 21, 509, 618
PspEI GGTNACC 1 cut(s) 383
PspFI CCCAGC 1 cut(s) 392
PspGI CCWGG 3 cut(s) 21, 509, 618
PspN4I GGNNCC 4 cut(s) 361, 497, 515, 542
PspPI GGNCC 3 cut(s) 359, 514, 541
PspPPI RGGWCCY 1 cut(s) 541
PvuII CAGCTG 1 cut(s) 492
RsaI GTAC 1 cut(s) 677
RsaNI GTAC 1 cut(s) 676
SaqAI TTAA 1 cut(s) 275
Sau3AI GATC 2 cut(s) 550, 651
Sau96I GGNCC 3 cut(s) 359, 514, 541
ScrFI CCNGG 5 cut(s) 23, 433, 511, 539, 620
SduI GDGCHC 3 cut(s) 438, 614, 641
SetI ASST 9 cut(s) 147, 156, 405, 494, 546, 561, 567, 602, 609
SfaNI GCATC 2 cut(s) 14, 192
SfcI CTRYAG 1 cut(s) 457
SinI GGWCC 2 cut(s) 514, 541
Sse9I AATT 2 cut(s) 83, 317
SspI AATATT 1 cut(s) 505
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 5 cut(s) 21, 431, 509, 537, 618
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 3 cut(s) 298, 421, 665
TaiI ACGT 1 cut(s) 609
TaqI TCGA 2 cut(s) 594, 650
TasI AATT 2 cut(s) 83, 317
TatI WGTACW 1 cut(s) 675
TauI GCSGC 9 cut(s) 194, 220, 223, 287, 377, 399, 431, 465, 526
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 1 cut(s) 636
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 1 cut(s) 520
Tsp45I GTSAC 1 cut(s) 383
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 1 cut(s) 636
VpaK11BI GGWCC 2 cut(s) 514, 541
XapI RAATTY 2 cut(s) 83, 317
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.