FvH4_6g37080

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014396
Physical Location & Seq
Forward (+)
29150626 .. 29151881
1256 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37080.t1

Sequence Viewer

Length: 642 bp
ATGGCATCAGTCATGGCTTCCCAGGCCCTCTACTCCCAAACCCTAATCAAACCCCCAACCCCCACCACCAAATCCAGGCCCTTCCGCTCTCCTCCTTCCATCCTCCGCCTCACACCCACCCCCACCCCCTCGCTCCCCCTCTCCCTCCGCCGACCCCTCTCCGTCTCCGCCACCGTCCAATCCCACCGCCCACTCTCCGACTCCCCCACCCGCACTCTCACCACTCTCTTCGCCTTCACCCTCGCCGCCTTCAAGGCCGCCTCCCGCCCCGTCATCGACTTCGCGGCCCAACACGGCCCCGCCGTCGCCTCCTCCGCCGGCACCCTCTTCTTCGCCTCCATCAGCGACCGCCCCAGCGGCTACCTCAACACGCCGCTCACCGTCGTCGCCGCCGGCCTCTCCAAGTGGCTGGACATCTACAGCGGCGTGTTGATGGTTAGGGTTCTGCTGAGCTGGTTCCCCAACATTCCATGGGACCGTCAGCCGCTCTCGGCCATCCGGGACCTCTGTGATCCCTACCTCAACCTGTTCCGCAACATCATCCCGCCCATTTTCGACACCTTGGACGTCAGCCCTCTACTTGCTTTCGCTGTTCTCGGCACGCTCGGGTCGATCCTCAACAACAGCAGGGGGATGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

214

Amino Acids

23.1

Weight (kDa)

10.45

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 137 - 205 1.2e-17 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27990
fragaria_vesca FvH4_6g37080
malus_domestica MD09G1163500.v1.1 MD17G1164100.v1.1
prunus_persica Prupe.3G021000_v2.0.a1
pyrus_communis pycom09g08100 pycom17g15710
rosa_chinensis RchiOBHm_Chr2g0149631
rosa_laevigata RLG00000020432
rosa_multiflora Rmu_sc0014307.1_g000002
rosa_roxburghii Rroxscaffold_2G00097850
rosa_rugosa Rorug02G0413600
rosa_samantha Rh2AG474000 Rh2BG485800 Rh2CG459900 Rh2DG495100
rosa_wichuraiana Rw2G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 570
AccB1I GGYRCC 1 cut(s) 320
AccBSI CCGCTC 3 cut(s) 87, 376, 487
AccII CGCG 1 cut(s) 284
AclWI GGATC 2 cut(s) 506, 607
AcoI YGGCCR 1 cut(s) 492
AcyI GRCGYC 1 cut(s) 567
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 2 cut(s) 21, 74
AluBI AGCT 1 cut(s) 453
AluI AGCT 1 cut(s) 453
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 2 cut(s) 506, 607
Ama87I CYCGRG 1 cut(s) 605
AoxI GGCC 7 cut(s) 24, 77, 255, 285, 295, 394, 492
AspS9I GGNCC 6 cut(s) 25, 78, 286, 296, 475, 502
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 3 cut(s) 211, 229, 370
AvaI CYCGRG 1 cut(s) 605
AvaII GGWCC 2 cut(s) 475, 502
BanI GGYRCC 1 cut(s) 320
BccI CCATC 4 cut(s) 107, 347, 427, 503
BceAI ACGGC 2 cut(s) 287, 310
BciT130I CCWGG 2 cut(s) 23, 76
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 1 cut(s) 169
BfmI CTRYAG 1 cut(s) 418
BglI GCCNNNNNGGC 2 cut(s) 254, 357
BisI GCNGC 8 cut(s) 246, 258, 285, 358, 374, 390, 424, 485
BlpI GCTNAGC 1 cut(s) 449
BlsI GCNGC 8 cut(s) 247, 259, 286, 359, 375, 391, 425, 486
Bme1390I CCNGG 3 cut(s) 23, 76, 500
Bme18I GGWCC 2 cut(s) 475, 502
BmeT110I CYCGRG 1 cut(s) 605
BmgT120I GGNCC 6 cut(s) 25, 78, 286, 296, 475, 502
BmiI GGNNCC 5 cut(s) 298, 322, 458, 476, 503
BmrFI CCNGG 3 cut(s) 23, 76, 500
BmsI GCATC 1 cut(s) 14
Bpu1102I GCTNAGC 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 500
BsaHI GRCGYC 1 cut(s) 567
BsaJI CCNNGG 3 cut(s) 21, 470, 561
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse118I RCCGGY 2 cut(s) 317, 392
BseBI CCWGG 2 cut(s) 23, 76
BseDI CCNNGG 3 cut(s) 21, 470, 561
BseGI GGATG 4 cut(s) 99, 495, 540, 639
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 440
BseRI GAGGAG 2 cut(s) 81, 301
BseYI CCCAGC 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 284
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 7 cut(s) 26, 79, 257, 287, 297, 396, 494
BshNI GGYRCC 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 349
BsiHKCI CYCGRG 1 cut(s) 605
BsiSI CCGG 3 cut(s) 318, 393, 499
BslFI GGGAC 2 cut(s) 488, 515
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 169
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 2 cut(s) 488, 515
BsnI GGCC 7 cut(s) 26, 79, 257, 287, 297, 396, 494
BsoBI CYCGRG 1 cut(s) 605
Bsp143I GATC 2 cut(s) 511, 612
Bsp1720I GCTNAGC 1 cut(s) 449
Bsp19I CCATGG 1 cut(s) 470
BspANI GGCC 7 cut(s) 26, 79, 257, 287, 297, 396, 494
BspCNI CTCAG 1 cut(s) 441
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 5 cut(s) 298, 322, 458, 476, 503
BspPI GGATC 2 cut(s) 506, 607
BspT107I GGYRCC 1 cut(s) 320
BsrBI CCGCTC 3 cut(s) 87, 376, 487
BsrFI RCCGGY 2 cut(s) 317, 392
BssAI RCCGGY 2 cut(s) 317, 392
BssECI CCNNGG 3 cut(s) 21, 470, 561
BssMI GATC 2 cut(s) 511, 612
BssNI GRCGYC 1 cut(s) 567
BssT1I CCWWGG 2 cut(s) 470, 561
Bst2UI CCWGG 2 cut(s) 23, 76
Bst4CI ACNGT 3 cut(s) 175, 382, 479
Bst6I CTCTTC 2 cut(s) 233, 332
BstACI GRCGYC 1 cut(s) 567
BstC8I GCNNGC 3 cut(s) 319, 394, 602
BstDEI CTNAG 1 cut(s) 449
BstDSI CCRYGG 1 cut(s) 470
BstF5I GGATG 4 cut(s) 99, 495, 540, 639
BstFNI CGCG 1 cut(s) 284
BstKTI GATC 2 cut(s) 514, 615
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 2 cut(s) 511, 612
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 4 cut(s) 23, 254, 314, 357
BstNI CCWGG 2 cut(s) 23, 76
BstSCI CCNGG 3 cut(s) 21, 74, 498
BstSFI CTRYAG 1 cut(s) 418
BstUI CGCG 1 cut(s) 284
BstXI CCANNNNNNTGG 1 cut(s) 409
BsuRI GGCC 7 cut(s) 26, 79, 257, 287, 297, 396, 494
BtgI CCRYGG 1 cut(s) 470
BtsCI GGATG 4 cut(s) 99, 495, 540, 639
Cac8I GCNNGC 3 cut(s) 319, 394, 602
Cfr10I RCCGGY 2 cut(s) 317, 392
Cfr13I GGNCC 6 cut(s) 25, 78, 286, 296, 475, 502
Csp6I GTAC 1 cut(s) 637
CviAII CATG 2 cut(s) 13, 471
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 1 cut(s) 449
DpnI GATC 2 cut(s) 513, 614
DpnII GATC 2 cut(s) 511, 612
EaeI YGGCCR 1 cut(s) 492
Eam1104I CTCTTC 2 cut(s) 233, 332
EarI CTCTTC 2 cut(s) 233, 332
EciI GGCGGA 4 cut(s) 95, 137, 157, 304
Eco130I CCWWGG 2 cut(s) 470, 561
Eco47I GGWCC 2 cut(s) 475, 502
Eco88I CYCGRG 1 cut(s) 605
EcoO109I RGGNCCY 3 cut(s) 25, 78, 502
EcoRII CCWGG 2 cut(s) 21, 74
EcoT14I CCWWGG 2 cut(s) 470, 561
ErhI CCWWGG 2 cut(s) 470, 561
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 2 cut(s) 16, 474
FaiI YATR 2 cut(s) 14, 472
FaqI GGGAC 2 cut(s) 488, 515
FatI CATG 2 cut(s) 12, 470
FauI CCCGC 4 cut(s) 218, 272, 307, 552
Fnu4HI GCNGC 8 cut(s) 246, 258, 285, 358, 374, 390, 424, 485
FokI GGATG 3 cut(s) 86, 482, 527
Fsp4HI GCNGC 8 cut(s) 246, 258, 285, 358, 374, 390, 424, 485
GluI GCNGC 8 cut(s) 246, 258, 285, 358, 374, 390, 424, 485
GsaI CCCAGC 1 cut(s) 357
HaeIII GGCC 7 cut(s) 26, 79, 257, 287, 297, 396, 494
HapII CCGG 3 cut(s) 318, 393, 499
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 2 cut(s) 16, 474
HinfI GANTC 1 cut(s) 200
HpaII CCGG 3 cut(s) 318, 393, 499
HphI GGTGA 3 cut(s) 211, 229, 370
Hpy188I TCNGA 1 cut(s) 199
Hpy99I CGWCG 3 cut(s) 308, 386, 389
HpyAV CCTTC 4 cut(s) 91, 105, 244, 259
HpyCH4III ACNGT 3 cut(s) 175, 382, 479
HpyCH4IV ACGT 1 cut(s) 567
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 254, 314, 357
HpyF3I CTNAG 1 cut(s) 449
HpySE526I ACGT 1 cut(s) 567
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 2 cut(s) 16, 474
KroI GCCGGC 2 cut(s) 317, 392
KroNI GCCGGC 2 cut(s) 319, 394
Kzo9I GATC 2 cut(s) 511, 612
LmnI GCTCC 1 cut(s) 138
LweI GCATC 1 cut(s) 14
MaeII ACGT 1 cut(s) 567
MalI GATC 2 cut(s) 513, 614
MbiI CCGCTC 3 cut(s) 87, 376, 487
MboI GATC 2 cut(s) 511, 612
MboII GAAGA 3 cut(s) 220, 319, 322
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 222
MroNI GCCGGC 2 cut(s) 317, 392
MspA1I CMGCKG 2 cut(s) 357, 423
MspI CCGG 3 cut(s) 318, 393, 499
MspR9I CCNGG 3 cut(s) 23, 76, 500
MvaI CCWGG 2 cut(s) 23, 76
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 4 cut(s) 23, 254, 314, 357
NaeI GCCGGC 2 cut(s) 319, 394
NciI CCSGG 1 cut(s) 500
NcoI CCATGG 1 cut(s) 470
NdeII GATC 2 cut(s) 511, 612
NgoMIV GCCGGC 2 cut(s) 317, 392
NlaIII CATG 2 cut(s) 16, 474
NlaIV GGNNCC 5 cut(s) 298, 322, 458, 476, 503
NmeAIII GCCGAG 2 cut(s) 470, 576
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 608
PdiI GCCGGC 2 cut(s) 319, 394
PfoI TCCNGGA 1 cut(s) 498
PkrI GCNGC 8 cut(s) 247, 259, 286, 359, 375, 391, 425, 486
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PpuMI RGGWCCY 1 cut(s) 502
Psp5II RGGWCCY 1 cut(s) 502
Psp6I CCWGG 2 cut(s) 21, 74
PspFI CCCAGC 1 cut(s) 353
PspGI CCWGG 2 cut(s) 21, 74
PspN4I GGNNCC 5 cut(s) 298, 322, 458, 476, 503
PspPI GGNCC 6 cut(s) 25, 78, 286, 296, 475, 502
PspPPI RGGWCCY 1 cut(s) 502
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SatI GCNGC 8 cut(s) 246, 258, 285, 358, 374, 390, 424, 485
Sau3AI GATC 2 cut(s) 511, 612
Sau96I GGNCC 6 cut(s) 25, 78, 286, 296, 475, 502
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 3 cut(s) 23, 76, 500
SetI ASST 7 cut(s) 366, 455, 507, 522, 528, 563, 570
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 418
SinI GGWCC 2 cut(s) 475, 502
StyD4I CCNGG 3 cut(s) 21, 74, 498
StyI CCWWGG 2 cut(s) 470, 561
TaaI ACNGT 3 cut(s) 175, 382, 479
TaiI ACGT 1 cut(s) 570
TaqI TCGA 3 cut(s) 276, 555, 611
TatI WGTACW 1 cut(s) 636
TauI GCSGC 8 cut(s) 248, 260, 287, 360, 376, 392, 426, 487
TspGWI ACGGA 1 cut(s) 151
VpaK11BI GGWCC 2 cut(s) 475, 502
ZraI GACGTC 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.