RchiOBHm_Chr2g0149631

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014396
Physical Location & Seq
Forward (+)
67464174 .. 67465140
967 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51903

Sequence Viewer

Length: 840 bp
ATGGGTTTTGAGAAAATTAGGGTTAAAAAAAAAAAAAAAATGAAGAAGAGGAAGAAGAAGGGAAAATTATATAAGCAAAATCCCCTTTTATCTATTTTTGGGTCGGCTAAGTCTCATTTATCTCTAAGCAGGTTCCTCTGTTCATCTTCACTTGCTCTCAGAAAACCCAAAATGGCATCAGTCATGGTTTCCCAGGCTCTCTTCTCCCAAACCCCAATCCTAATCAGACCCCCCACCCGCACCCCCAAATTCAAATCCTTCTCCTCTCCCTCTCCCTCCCTCGTCCACATTCGCACTCCCAATCCCAAACTCCCCAACCTCCGCCTCTCTCTCCGCCGACCCCTCTGCATCTCCGCCACCACCCAAACCCTAACCCTAACCCCGCCGCCGCCGCCTTCTCCGCTCTCCCACGCCCCCACTCGCACTCTCACCACCCTCTTCGCCGTAACCCTAGCCGCCTTCCGCACCGTCTTCAAATTCGCCTCCCAGCACGCCCCCGCCGTGGCCTCCTCCGCCGGACCTCTCTTCTTCGCCGCCCTGGGTGACCGCCCCAGCGGCTACCTCAACACTCCCCTCACGGTCGTCGCCGCCGGGCTCTCCAAGTGGCTGGACATCTACAGCGGCGTTCTCATGGTTCGGGTTCTGCTGAGCTGGTTCCCCAATATTCCCTGGGACCGGCAGCCGCTCTCGGCCATCCGGGACCTCTGCGATCCCTACCTCAACCTCTTCCGCAACATCATTCCTCCGATTTTCGACACCTTGGACGTGAGCCCCCTCCTGGCTTTCGCAGTGTTGGGCACGCTTGGCTCGATCCTCAACAACAGTAGGGGAATGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

279

Amino Acids

30.78

Weight (kDa)

11.21

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 203 - 271 2e-17 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27990
fragaria_vesca FvH4_6g37080
malus_domestica MD09G1163500.v1.1 MD17G1164100.v1.1
prunus_persica Prupe.3G021000_v2.0.a1
pyrus_communis pycom09g08100 pycom17g15710
rosa_chinensis RchiOBHm_Chr2g0149631
rosa_laevigata RLG00000020432
rosa_multiflora Rmu_sc0014307.1_g000002
rosa_roxburghii Rroxscaffold_2G00097850
rosa_rugosa Rorug02G0413600
rosa_samantha Rh2AG474000 Rh2BG485800 Rh2CG459900 Rh2DG495100
rosa_wichuraiana Rw2G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 120
AccBSI CCGCTC 2 cut(s) 403, 685
AclWI GGATC 2 cut(s) 704, 805
AcoI YGGCCR 1 cut(s) 690
AcsI RAATTY 2 cut(s) 248, 476
AfaI GTAC 1 cut(s) 836
AfiI CCNNNNNNNGG 3 cut(s) 502, 675, 778
AgsI TTSAA 2 cut(s) 253, 475
AjiI CACGTC 1 cut(s) 766
AjnI CCWGG 4 cut(s) 192, 537, 668, 777
AluBI AGCT 1 cut(s) 651
AluI AGCT 1 cut(s) 651
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 2 cut(s) 704, 805
AoxI GGCC 2 cut(s) 504, 690
ApeKI GCWGC 1 cut(s) 679
ApoI RAATTY 2 cut(s) 248, 476
AspS9I GGNCC 3 cut(s) 518, 673, 700
AsuC2I CCSGG 2 cut(s) 592, 698
AsuHPI GGTGA 2 cut(s) 421, 554
AvaII GGWCC 3 cut(s) 518, 673, 700
BaeGI GKGCMC 1 cut(s) 800
BanII GRGCYC 2 cut(s) 597, 773
BbsI GAAGAC 1 cut(s) 463
BbvI GCAGC 1 cut(s) 691
BccI CCATC 1 cut(s) 701
BceAI ACGGC 2 cut(s) 428, 485
BcgI CGANNNNNNTGC 2 cut(s) 327, 361
BciT130I CCWGG 4 cut(s) 194, 539, 670, 779
BcnI CCSGG 2 cut(s) 592, 698
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 452
BfmI CTRYAG 1 cut(s) 616
BfuAI ACCTGC 1 cut(s) 120
BglI GCCNNNNNGGC 1 cut(s) 555
BlpI GCTNAGC 1 cut(s) 647
Bme1390I CCNGG 6 cut(s) 194, 539, 592, 670, 698, 779
Bme18I GGWCC 3 cut(s) 518, 673, 700
BmgBI CACGTC 1 cut(s) 766
BmgT120I GGNCC 3 cut(s) 518, 673, 700
BmiI GGNNCC 4 cut(s) 134, 656, 674, 701
BmrFI CCNGG 6 cut(s) 194, 539, 592, 670, 698, 779
BmsI GCATC 2 cut(s) 185, 357
BpiI GAAGAC 1 cut(s) 463
Bpu1102I GCTNAGC 1 cut(s) 647
BpuMI CCSGG 2 cut(s) 592, 698
BsaJI CCNNGG 7 cut(s) 192, 501, 537, 538, 668, 669, 759
Bsc4I CCNNNNNNNGG 3 cut(s) 502, 675, 778
Bse118I RCCGGY 1 cut(s) 675
BseBI CCWGG 4 cut(s) 194, 539, 670, 779
BseDI CCNNGG 7 cut(s) 192, 501, 537, 538, 668, 669, 759
BseGI GGATG 1 cut(s) 693
BseLI CCNNNNNNNGG 3 cut(s) 502, 675, 778
BseMII CTCAG 2 cut(s) 172, 638
BseRI GAGGAG 2 cut(s) 253, 499
BseSI GKGCMC 1 cut(s) 800
BseXI GCAGC 1 cut(s) 691
BseYI CCCAGC 2 cut(s) 486, 551
Bsh1285I CGRYCG 1 cut(s) 582
BshFI GGCC 2 cut(s) 506, 692
BsiEI CGRYCG 1 cut(s) 582
BsiSI CCGG 4 cut(s) 516, 591, 676, 697
BslFI GGGAC 2 cut(s) 686, 713
BslI CCNNNNNNNGG 3 cut(s) 502, 675, 778
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 2 cut(s) 686, 713
BsnI GGCC 2 cut(s) 506, 692
Bsp1286I GDGCHC 3 cut(s) 597, 773, 800
Bsp143I GATC 2 cut(s) 709, 810
Bsp1720I GCTNAGC 1 cut(s) 647
BspANI GGCC 2 cut(s) 506, 692
BspCNI CTCAG 2 cut(s) 171, 639
BspLI GGNNCC 4 cut(s) 134, 656, 674, 701
BspMI ACCTGC 1 cut(s) 120
BspPI GGATC 2 cut(s) 704, 805
BsrBI CCGCTC 2 cut(s) 403, 685
BsrFI RCCGGY 1 cut(s) 675
BssAI RCCGGY 1 cut(s) 675
BssECI CCNNGG 7 cut(s) 192, 501, 537, 538, 668, 669, 759
BssMI GATC 2 cut(s) 709, 810
BssT1I CCWWGG 1 cut(s) 759
Bst2UI CCWGG 4 cut(s) 194, 539, 670, 779
Bst4CI ACNGT 3 cut(s) 469, 580, 824
Bst6I CTCTTC 5 cut(s) 41, 206, 443, 530, 731
BstC8I GCNNGC 2 cut(s) 492, 800
BstDEI CTNAG 4 cut(s) 108, 125, 158, 647
BstDSI CCRYGG 1 cut(s) 501
BstEII GGTNACC 1 cut(s) 542
BstF5I GGATG 1 cut(s) 693
BstKTI GATC 2 cut(s) 712, 813
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 2 cut(s) 709, 810
BstMCI CGRYCG 1 cut(s) 582
BstMWI GCNNNNNNNGC 5 cut(s) 391, 400, 512, 555, 804
BstNI CCWGG 4 cut(s) 194, 539, 670, 779
BstPI GGTNACC 1 cut(s) 542
BstSCI CCNGG 6 cut(s) 192, 537, 590, 668, 696, 777
BstSFI CTRYAG 1 cut(s) 616
BstSLI GKGCMC 1 cut(s) 800
BstV1I GCAGC 1 cut(s) 691
BstV2I GAAGAC 1 cut(s) 463
BstXI CCANNNNNNTGG 1 cut(s) 607
BsuRI GGCC 2 cut(s) 506, 692
BtgI CCRYGG 1 cut(s) 501
BtrI CACGTC 1 cut(s) 766
BtsCI GGATG 1 cut(s) 693
BtsI GCAGTG 1 cut(s) 795
BtsIMutI CAGTG 1 cut(s) 795
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 492, 800
Cfr10I RCCGGY 1 cut(s) 675
Cfr13I GGNCC 3 cut(s) 518, 673, 700
Csp6I GTAC 1 cut(s) 835
CviAII CATG 2 cut(s) 184, 631
CviQI GTAC 1 cut(s) 835
DdeI CTNAG 4 cut(s) 108, 125, 158, 647
DpnI GATC 2 cut(s) 711, 812
DpnII GATC 2 cut(s) 709, 810
EaeI YGGCCR 1 cut(s) 690
Eam1104I CTCTTC 5 cut(s) 41, 206, 443, 530, 731
EarI CTCTTC 5 cut(s) 41, 206, 443, 530, 731
EciI GGCGGA 4 cut(s) 311, 323, 343, 502
Eco130I CCWWGG 1 cut(s) 759
Eco24I GRGCYC 2 cut(s) 597, 773
Eco47I GGWCC 3 cut(s) 518, 673, 700
Eco91I GGTNACC 1 cut(s) 542
EcoO109I RGGNCCY 1 cut(s) 700
EcoO65I GGTNACC 1 cut(s) 542
EcoRII CCWGG 4 cut(s) 192, 537, 668, 777
EcoT14I CCWWGG 1 cut(s) 759
EcoT38I GRGCYC 2 cut(s) 597, 773
ErhI CCWWGG 1 cut(s) 759
FaeI CATG 2 cut(s) 187, 634
FaiI YATR 4 cut(s) 70, 72, 185, 632
FaqI GGGAC 2 cut(s) 686, 713
FatI CATG 2 cut(s) 183, 630
FauI CCCGC 3 cut(s) 245, 390, 505
FokI GGATG 1 cut(s) 680
FriOI GRGCYC 2 cut(s) 597, 773
FspBI CTAG 1 cut(s) 452
GsaI CCCAGC 2 cut(s) 490, 555
HaeIII GGCC 2 cut(s) 506, 692
HapII CCGG 4 cut(s) 516, 591, 676, 697
Hin1II CATG 2 cut(s) 187, 634
HpaII CCGG 4 cut(s) 516, 591, 676, 697
HphI GGTGA 2 cut(s) 421, 554
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 3 cut(s) 161, 227, 747
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 1 cut(s) 587
HpyAV CCTTC 4 cut(s) 52, 268, 405, 469
HpyCH4III ACNGT 3 cut(s) 469, 580, 824
HpyCH4IV ACGT 1 cut(s) 765
HpyCH4V TGCA 1 cut(s) 348
HpyF10VI GCNNNNNNNGC 5 cut(s) 391, 400, 512, 555, 804
HpyF3I CTNAG 4 cut(s) 108, 125, 158, 647
HpySE526I ACGT 1 cut(s) 765
Hsp92II CATG 2 cut(s) 187, 634
Kzo9I GATC 2 cut(s) 709, 810
Lsp1109I GCAGC 1 cut(s) 691
LweI GCATC 2 cut(s) 185, 357
MaeI CTAG 1 cut(s) 452
MaeII ACGT 1 cut(s) 765
MaeIII GTNAC 2 cut(s) 445, 542
MalI GATC 2 cut(s) 711, 812
MbiI CCGCTC 2 cut(s) 403, 685
MboI GATC 2 cut(s) 709, 810
MhlI GDGCHC 3 cut(s) 597, 773, 800
MluCI AATT 4 cut(s) 15, 65, 248, 476
MseI TTAA 1 cut(s) 24
MspA1I CMGCKG 2 cut(s) 555, 621
MspI CCGG 4 cut(s) 516, 591, 676, 697
MspR9I CCNGG 6 cut(s) 194, 539, 592, 670, 698, 779
MvaI CCWGG 4 cut(s) 194, 539, 670, 779
MwoI GCNNNNNNNGC 5 cut(s) 391, 400, 512, 555, 804
NciI CCSGG 2 cut(s) 592, 698
NdeII GATC 2 cut(s) 709, 810
NlaIII CATG 2 cut(s) 187, 634
NlaIV GGNNCC 4 cut(s) 134, 656, 674, 701
NmeAIII GCCGAG 1 cut(s) 668
NmuCI GTSAC 1 cut(s) 542
PasI CCCWGGG 2 cut(s) 538, 669
PcsI WCGNNNNNNNCGW 2 cut(s) 498, 806
PfoI TCCNGGA 1 cut(s) 696
PpuMI RGGWCCY 1 cut(s) 700
Psp5II RGGWCCY 1 cut(s) 700
Psp6I CCWGG 4 cut(s) 192, 537, 668, 777
PspEI GGTNACC 1 cut(s) 542
PspFI CCCAGC 2 cut(s) 486, 551
PspGI CCWGG 4 cut(s) 192, 537, 668, 777
PspN4I GGNNCC 4 cut(s) 134, 656, 674, 701
PspPI GGNCC 3 cut(s) 518, 673, 700
PspPPI RGGWCCY 1 cut(s) 700
RsaI GTAC 1 cut(s) 836
RsaNI GTAC 1 cut(s) 835
SaqAI TTAA 1 cut(s) 24
Sau3AI GATC 2 cut(s) 709, 810
Sau96I GGNCC 3 cut(s) 518, 673, 700
ScrFI CCNGG 6 cut(s) 194, 539, 592, 670, 698, 779
SduI GDGCHC 3 cut(s) 597, 773, 800
SfaNI GCATC 2 cut(s) 185, 357
SfcI CTRYAG 1 cut(s) 616
SinI GGWCC 3 cut(s) 518, 673, 700
Sse9I AATT 4 cut(s) 15, 65, 248, 476
SspI AATATT 1 cut(s) 664
SspMI CTAG 1 cut(s) 452
StyD4I CCNGG 6 cut(s) 192, 537, 590, 668, 696, 777
StyI CCWWGG 1 cut(s) 759
TaaI ACNGT 3 cut(s) 469, 580, 824
TaiI ACGT 1 cut(s) 768
TaqI TCGA 2 cut(s) 753, 809
TasI AATT 4 cut(s) 15, 65, 248, 476
TatI WGTACW 1 cut(s) 834
TauI GCSGC 9 cut(s) 388, 391, 394, 458, 536, 558, 590, 624, 685
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 1 cut(s) 795
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 1 cut(s) 679
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 2 cut(s) 56, 132
TspRI CASTG 1 cut(s) 795
VpaK11BI GGWCC 3 cut(s) 518, 673, 700
XapI RAATTY 2 cut(s) 248, 476
XspI CTAG 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.