MD09G1163500.v1.1

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0014396
Physical Location & Seq
Reverse (-)
13352539 .. 13353744
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1163500.v1.1.491

Sequence Viewer

Length: 666 bp
ATGGCATCAGTCATGGCTTCTCAAGTTATCTTCTTCCCCACCTCAACCCCCATCAAACCAAACTCCAAATTCAAACCCTTCTTCTCTCCCACTCCCACTCTCAAATTCAATTCCAAATCCAATCCCAACCCAATCCCCAAACTCTCCCTCAGACCCATCTGCGCCACTCTCACTACAAACCCCCAAACCCTCACTTCCCAAAACCCATCTCAGCCCCCGTCGCCCCTCACCCACCTCCCCACTCGCACCATCACCACCCTCTTCGCCCTAACAGTAGCCGCCGTCCGCAGCCTCTCAATTTCGCTCGTCAAGTTCGGTTCCCAATTCGGACCCTCCATCGGATCCGCCGCCGGACCCCTCTTCTTTGCGGCGCTCAGGGACCGCCCGAGCGGTAATTTGAATACCCCTTTGACGGTTGTCGCTGCCGGTCTCTCCAAATGGCTCGATATCTACAGCGGGGTTTTGATGGTTAGGGTTTTGCTCAGCTGGTTCCCCAATATTCCTTGGGACCGTCAGCCACTTTCGGCGATTCGGGACCTCTGCGATCCTTATTTGAACCTCTTTCGCAATATAATTCCGCCGATTTTTGATACCTTGGATGTTAGCCCCCTCTTGGCTTTCGCAGTTTTGGGCACGCTCGGGTCAATTCTCAACAACAGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

222

Amino Acids

23.96

Weight (kDa)

10.53

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 148 - 216 1.3e-17 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27990
fragaria_vesca FvH4_6g37080
malus_domestica MD09G1163500.v1.1 MD17G1164100.v1.1
prunus_persica Prupe.3G021000_v2.0.a1
pyrus_communis pycom09g08100 pycom17g15710
rosa_chinensis RchiOBHm_Chr2g0149631
rosa_laevigata RLG00000020432
rosa_multiflora Rmu_sc0014307.1_g000002
rosa_roxburghii Rroxscaffold_2G00097850
rosa_rugosa Rorug02G0413600
rosa_samantha Rh2AG474000 Rh2BG485800 Rh2CG459900 Rh2DG495100
rosa_wichuraiana Rw2G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 390
AciI CCGC 9 cut(s) 279, 286, 345, 348, 368, 382, 390, 456, 578
AclWI GGATC 3 cut(s) 336, 349, 539
AcsI RAATTY 2 cut(s) 68, 104
AfiI CCNNNNNNNGG 3 cut(s) 338, 412, 613
AgsI TTSAA 4 cut(s) 73, 109, 400, 556
AluBI AGCT 1 cut(s) 486
AluI AGCT 1 cut(s) 486
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 3 cut(s) 336, 349, 539
Ama87I CYCGRG 2 cut(s) 385, 638
ApeKI GCWGC 2 cut(s) 288, 422
ApoI RAATTY 2 cut(s) 68, 104
AspLEI GCGC 2 cut(s) 164, 373
AspS9I GGNCC 5 cut(s) 329, 353, 379, 508, 535
AsuHPI GGTGA 2 cut(s) 220, 244
AvaI CYCGRG 2 cut(s) 385, 638
AvaII GGWCC 5 cut(s) 329, 353, 379, 508, 535
BaeGI GKGCMC 1 cut(s) 635
BamHI GGATCC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 300, 409
BccI CCATC 6 cut(s) 59, 164, 214, 257, 344, 460
BceAI ACGGC 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 451
BfoI RGCGCY 1 cut(s) 374
BisI GCNGC 5 cut(s) 279, 289, 348, 369, 423
BlpI GCTNAGC 1 cut(s) 482
BlsI GCNGC 5 cut(s) 280, 290, 349, 370, 424
Bme18I GGWCC 5 cut(s) 329, 353, 379, 508, 535
BmeT110I CYCGRG 2 cut(s) 385, 638
BmgT120I GGNCC 5 cut(s) 329, 353, 379, 508, 535
BmiI GGNNCC 8 cut(s) 319, 331, 343, 355, 380, 491, 509, 536
BmsI GCATC 1 cut(s) 14
BoxI GACNNNNGTC 1 cut(s) 416
Bpu10I CCTNAGC 1 cut(s) 374
Bpu1102I GCTNAGC 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 2 cut(s) 503, 594
Bsc4I CCNNNNNNNGG 3 cut(s) 338, 412, 613
Bse118I RCCGGY 1 cut(s) 425
BseDI CCNNGG 2 cut(s) 503, 594
BseGI GGATG 1 cut(s) 604
BseLI CCNNNNNNNGG 3 cut(s) 338, 412, 613
BseMII CTCAG 4 cut(s) 163, 224, 388, 496
BseSI GKGCMC 1 cut(s) 635
BseXI GCAGC 2 cut(s) 300, 409
BsiHKCI CYCGRG 2 cut(s) 385, 638
BsiSI CCGG 2 cut(s) 351, 426
BslFI GGGAC 3 cut(s) 392, 521, 548
BslI CCNNNNNNNGG 3 cut(s) 338, 412, 613
BsmAI GTCTC 1 cut(s) 434
BsmFI GGGAC 3 cut(s) 392, 521, 548
Bso31I GGTCTC 1 cut(s) 434
BsoBI CYCGRG 2 cut(s) 385, 638
Bsp1286I GDGCHC 1 cut(s) 635
Bsp143I GATC 2 cut(s) 341, 544
Bsp1720I GCTNAGC 1 cut(s) 482
BspACI CCGC 9 cut(s) 279, 286, 345, 348, 368, 382, 390, 456, 578
BspCNI CTCAG 4 cut(s) 162, 223, 387, 495
BspLI GGNNCC 8 cut(s) 319, 331, 343, 355, 380, 491, 509, 536
BspPI GGATC 3 cut(s) 336, 349, 539
BspTNI GGTCTC 1 cut(s) 434
BsrBI CCGCTC 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 425
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 2 cut(s) 503, 594
BssMI GATC 2 cut(s) 341, 544
BssT1I CCWWGG 2 cut(s) 503, 594
Bst4CI ACNGT 4 cut(s) 274, 415, 512, 659
Bst6I CTCTTC 2 cut(s) 266, 365
BstC8I GCNNGC 1 cut(s) 635
BstDEI CTNAG 4 cut(s) 149, 210, 374, 482
BstF5I GGATG 1 cut(s) 604
BstH2I RGCGCY 1 cut(s) 374
BstHHI GCGC 2 cut(s) 164, 373
BstKTI GATC 2 cut(s) 344, 547
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 2 cut(s) 341, 544
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstPAI GACNNNNGTC 1 cut(s) 416
BstSFI CTRYAG 1 cut(s) 451
BstSLI GKGCMC 1 cut(s) 635
BstV1I GCAGC 2 cut(s) 300, 409
BstX2I RGATCY 1 cut(s) 341
BstYI RGATCY 1 cut(s) 341
BtsCI GGATG 1 cut(s) 604
Cac8I GCNNGC 1 cut(s) 635
CfoI GCGC 2 cut(s) 164, 373
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 5 cut(s) 329, 353, 379, 508, 535
CviAII CATG 1 cut(s) 13
CviJI RGCY 9 cut(s) 17, 214, 278, 291, 442, 486, 517, 606, 617
CviKI_1 RGCY 9 cut(s) 17, 214, 278, 291, 442, 486, 517, 606, 617
DdeI CTNAG 4 cut(s) 149, 210, 374, 482
DpnI GATC 2 cut(s) 343, 546
DpnII GATC 2 cut(s) 341, 544
Eam1104I CTCTTC 2 cut(s) 266, 365
EarI CTCTTC 2 cut(s) 266, 365
EciI GGCGGA 2 cut(s) 334, 567
Eco130I CCWWGG 2 cut(s) 503, 594
Eco31I GGTCTC 1 cut(s) 434
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 5 cut(s) 329, 353, 379, 508, 535
Eco88I CYCGRG 2 cut(s) 385, 638
EcoO109I RGGNCCY 1 cut(s) 535
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 2 cut(s) 503, 594
ErhI CCWWGG 2 cut(s) 503, 594
FaeI CATG 1 cut(s) 16
FaiI YATR 2 cut(s) 14, 572
FaqI GGGAC 3 cut(s) 392, 521, 548
FatI CATG 1 cut(s) 12
FauI CCCGC 1 cut(s) 449
Fnu4HI GCNGC 5 cut(s) 279, 289, 348, 369, 423
FokI GGATG 1 cut(s) 611
Fsp4HI GCNGC 5 cut(s) 279, 289, 348, 369, 423
GlaI GCGC 2 cut(s) 163, 372
GluI GCNGC 5 cut(s) 279, 289, 348, 369, 423
HaeII RGCGCY 1 cut(s) 374
HapII CCGG 2 cut(s) 351, 426
HhaI GCGC 2 cut(s) 164, 373
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 2 cut(s) 162, 371
HinP1I GCGC 2 cut(s) 162, 371
HinfI GANTC 1 cut(s) 529
HpaII CCGG 2 cut(s) 351, 426
HphI GGTGA 2 cut(s) 220, 244
Hpy188I TCNGA 3 cut(s) 152, 329, 341
Hpy188III TCNNGA 1 cut(s) 533
Hpy99I CGWCG 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 4 cut(s) 274, 415, 512, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 4 cut(s) 149, 210, 374, 482
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 2 cut(s) 162, 371
Kzo9I GATC 2 cut(s) 341, 544
LpnPI CCDG 4 cut(s) 361, 364, 439, 472
Lsp1109I GCAGC 2 cut(s) 300, 409
LweI GCATC 1 cut(s) 14
MalI GATC 2 cut(s) 343, 546
MbiI CCGCTC 1 cut(s) 390
MboI GATC 2 cut(s) 341, 544
MboII GAAGA 5 cut(s) 22, 25, 73, 253, 352
MflI RGATCY 1 cut(s) 341
MhlI GDGCHC 1 cut(s) 635
MluCI AATT 8 cut(s) 68, 104, 109, 297, 323, 394, 573, 645
MspA1I CMGCKG 2 cut(s) 456, 486
MspI CCGG 2 cut(s) 351, 426
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 2 cut(s) 341, 544
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 8 cut(s) 319, 331, 343, 355, 380, 491, 509, 536
PfeI GAWTC 1 cut(s) 529
PkrI GCNGC 5 cut(s) 280, 290, 349, 370, 424
PpuMI RGGWCCY 1 cut(s) 535
PshAI GACNNNNGTC 1 cut(s) 416
Psp5II RGGWCCY 1 cut(s) 535
PspN4I GGNNCC 8 cut(s) 319, 331, 343, 355, 380, 491, 509, 536
PspPI GGNCC 5 cut(s) 329, 353, 379, 508, 535
PspPPI RGGWCCY 1 cut(s) 535
PsuI RGATCY 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 486
SatI GCNGC 5 cut(s) 279, 289, 348, 369, 423
Sau3AI GATC 2 cut(s) 341, 544
Sau96I GGNCC 5 cut(s) 329, 353, 379, 508, 535
SduI GDGCHC 1 cut(s) 635
SetI ASST 6 cut(s) 44, 237, 488, 540, 561, 596
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 451
SinI GGWCC 5 cut(s) 329, 353, 379, 508, 535
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 8 cut(s) 68, 104, 109, 297, 323, 394, 573, 645
SsiI CCGC 9 cut(s) 279, 286, 345, 348, 368, 382, 390, 456, 578
SspI AATATT 1 cut(s) 499
StyI CCWWGG 2 cut(s) 503, 594
TaaI ACNGT 4 cut(s) 274, 415, 512, 659
TaqI TCGA 1 cut(s) 444
TasI AATT 8 cut(s) 68, 104, 109, 297, 323, 394, 573, 645
TauI GCSGC 3 cut(s) 281, 350, 371
TfiI GAWTC 1 cut(s) 529
TseI GCWGC 2 cut(s) 288, 422
VpaK11BI GGWCC 5 cut(s) 329, 353, 379, 508, 535
XapI RAATTY 2 cut(s) 68, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.