Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007707

Physical Location & Seq

Genomic Coordinates Forward (+)

14290947 .. 14293199

Gene Structure 2253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGGTCGACAGAAAAAGAGCAGACGACGCAACATCACCCGCCTCACATCAGCAGTCTCGTCGTACGTCCCTCCGGAAGCAACGACAGAGAAGACGGCCGCAACGCCGCCGGAGACTATGAGCCCGGAGAAGTCTCTCGTGACCGGCCTTCGTTTAATCGCTCGGATCGGTATAAGGGTGACAATGGTGGACATAGAACTCGGGCAAGTTCTAGCTCACCAGGCCGTCGTGGATATGAAGATCACAAGCATGGCTCTGATCTTAATCATTCAGGCGTTCCACCTCGTGGCCGTGAGTTAAGCAGCAGAAGGGAAGCACCTGGGAGACACAGAGACTATTCCCCACCCTTAGCTAGAGGTGGAGCTGGTGCTCGTCCTTATCGAAGAGGTTTAGATGGGCCTGAACCTCCACATGGAAGGGATGGCATGAGCAGAAATAATATATCAAAGGTGCAACCAAGAGAAGGAGATTGGTACTGTCTTGATCCATTATGCAGAAACTTGAACTTTGCGAGACGCGAGTCCTGCTACAAATGCAAGAGGCATCGTTATGCACCGGCTAATAGTCCTCCACTGCCTCGCCTTCTTCCTCCTCCCATGAATCATTCCCCAAGAAGAGACTTTAATGGCTACAGATCTCCTCCGCGTGGCTGGCCCAGAGACTACCCGCCGCCAAGGCATGACCATCCCACATGGAGAGACAGAGAACGAGACCGTCCGCATTACTCAGACCATGAGTACCCTCCTAGCAGAAGGATAGCATCTGACTGGGCCCATACAGAGCCGCTCCCAAAACCTCATTATGACAGACGACCACCTCTCAGTCCACCTCGTGGTGGCAGATGGGGACGAGTTTTGAGAGAGAGGAGCAGATCCCCGCCATTGAGAGATGTTCCACCACCGCCATTGAGAGATGGTCCACCACCGTCATTGAGAGGAGGCGGTCCACCGCTGCACAGAGATTACCGCCGTGACAGTCACTTTGACAGAGAAAGACGAGACGATGGGCGTGGCGGCAGAGGCAGAATGGGAAACTCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1901796 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

347

Amino Acids

39.78

Weight (kDa)

10.61

Isoelectric Point (pI)

77.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28990 AT4G28990
fragaria_vesca	FvH4_1g04330
malus_domestica	MD02G1042900.v1.1 MD15G1181500.v1.1 MD15G1181700.v1.1
prunus_persica	Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1
pyrus_communis	pycom02g03570 pycom15g16390
rosa_chinensis	RchiOBHm_Chr2g0088791 RchiOBHm_Chr2g0088801 RchiOBHm_Chr2g0089981
rosa_laevigata	RLG00000016065
rosa_multiflora	Rmu_sc0000226.1_g000022
rosa_roxburghii	Rroxscaffold_2G00151490
rosa_rugosa	Rorug02G0004100
rosa_samantha	Rh2AG049300 Rh2AG049400 Rh2BG048200 Rh2CG050400 Rh2DG049500
rosa_wichuraiana	Rw2G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	287, 833
AccBSI	CCGCTC	1 cut(s)	787
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	2 cut(s)	519, 646
AccIII	TCCGGA	1 cut(s)	74
AclWI	GGATC	3 cut(s)	174, 479, 867
AcoI	YGGCCR	2 cut(s)	97, 289
AdeI	CACNNNGTG	2 cut(s)	287, 833
AfaI	GTAC	3 cut(s)	66, 476, 740
AfiI	CCNNNNNNNGG	6 cut(s)	287, 413, 464, 647, 833, 836
AgsI	TTSAA	1 cut(s)	505
AjnI	CCWGG	2 cut(s)	220, 319
AluBI	AGCT	3 cut(s)	216, 353, 365
AluI	AGCT	3 cut(s)	216, 353, 365
Alw21I	GWGCWC	1 cut(s)	373
AlwI	GGATC	3 cut(s)	174, 479, 867
Ama87I	CYCGRG	1 cut(s)	201
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	7 cut(s)	97, 146, 223, 289, 398, 653, 771
ApaI	GGGCCC	1 cut(s)	775
ApeKI	GCWGC	2 cut(s)	303, 952
ArsI	GACNNNNNNTTYG	2 cut(s)	965, 997
AspS9I	GGNCC	6 cut(s)	398, 654, 771, 772, 917, 944
AsuC2I	CCSGG	1 cut(s)	126
AsuHPI	GGTGA	3 cut(s)	29, 191, 210
AvaI	CYCGRG	1 cut(s)	201
AvaII	GGWCC	2 cut(s)	917, 944
BaeGI	GKGCMC	1 cut(s)	775
BanII	GRGCYC	2 cut(s)	126, 775
BauI	CACGAG	3 cut(s)	138, 285, 831
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	2 cut(s)	315, 939
BccI	CCATC	6 cut(s)	389, 416, 693, 837, 908, 998
BceAI	ACGGC	4 cut(s)	112, 210, 276, 954
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	2 cut(s)	222, 321
BcnI	CCSGG	1 cut(s)	126
BfaI	CTAG	3 cut(s)	213, 354, 747
BfmI	CTRYAG	1 cut(s)	631
BglI	GCCNNNNNGGC	1 cut(s)	676
BglII	AGATCT	1 cut(s)	635
BisI	GCNGC	7 cut(s)	100, 108, 304, 671, 785, 953, 1015
BlsI	GCNGC	7 cut(s)	101, 109, 305, 672, 786, 954, 1016
Bme1390I	CCNGG	3 cut(s)	126, 222, 321
Bme18I	GGWCC	2 cut(s)	917, 944
BmeT110I	CYCGRG	1 cut(s)	201
BmgT120I	GGNCC	6 cut(s)	398, 654, 771, 772, 917, 944
BmiI	GGNNCC	1 cut(s)	773
BmrFI	CCNGG	3 cut(s)	126, 222, 321
BmrI	ACTGGG	1 cut(s)	778
BmsI	GCATC	2 cut(s)	553, 770
BmuI	ACTGGG	1 cut(s)	778
BoxI	GACNNNNGTC	1 cut(s)	520
BpiI	GAAGAC	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	349
BpuMI	CCSGG	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	705
BsaJI	CCNNGG	2 cut(s)	320, 674
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	6 cut(s)	287, 413, 464, 647, 833, 836
Bse118I	RCCGGY	2 cut(s)	144, 556
Bse1I	ACTGG	1 cut(s)	773
Bse8I	GATNNNNATC	1 cut(s)	264
BseAI	TCCGGA	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	222, 321
BseDI	CCNNGG	2 cut(s)	320, 674
BseGI	GGATG	2 cut(s)	427, 685
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	6 cut(s)	287, 413, 464, 647, 833, 836
BseMII	CTCAG	2 cut(s)	741, 835
BseNI	ACTGG	1 cut(s)	773
BseRI	GAGGAG	4 cut(s)	582, 630, 880, 951
BseSI	GKGCMC	1 cut(s)	775
BseX3I	CGGCCG	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	315, 939
BsgI	GTGCAG	1 cut(s)	938
Bsh1236I	CGCG	2 cut(s)	519, 646
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	7 cut(s)	99, 148, 225, 291, 400, 655, 773
BsiEI	CGRYCG	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	5 cut(s)	75, 111, 126, 145, 557
BsiWI	CGTACG	1 cut(s)	64
BslFI	GGGAC	2 cut(s)	54, 861
BslI	CCNNNNNNNGG	6 cut(s)	287, 413, 464, 647, 833, 836
BsmBI	CGTCTC	2 cut(s)	508, 993
BsmFI	GGGAC	2 cut(s)	54, 861
BsnI	GGCC	7 cut(s)	99, 148, 225, 291, 400, 655, 773
Bso31I	GGTCTC	1 cut(s)	705
BsoBI	CYCGRG	1 cut(s)	201
Bsp120I	GGGCCC	1 cut(s)	771
Bsp1286I	GDGCHC	3 cut(s)	126, 373, 775
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	6 cut(s)	166, 241, 259, 484, 635, 872
BspANI	GGCC	7 cut(s)	99, 148, 225, 291, 400, 655, 773
BspCNI	CTCAG	2 cut(s)	740, 834
BspEI	TCCGGA	1 cut(s)	74
BspFNI	CGCG	2 cut(s)	519, 646
BspLI	GGNNCC	1 cut(s)	773
BspPI	GGATC	3 cut(s)	174, 479, 867
BspTNI	GGTCTC	1 cut(s)	705
BsrBI	CCGCTC	1 cut(s)	787
BsrFI	RCCGGY	2 cut(s)	144, 556
BsrI	ACTGG	1 cut(s)	773
BssAI	RCCGGY	2 cut(s)	144, 556
BssECI	CCNNGG	2 cut(s)	320, 674
BssMI	GATC	6 cut(s)	166, 241, 259, 484, 635, 872
BssSI	CACGAG	3 cut(s)	138, 285, 831
BssT1I	CCWWGG	1 cut(s)	674
Bst2BI	CACGAG	3 cut(s)	138, 285, 831
Bst2UI	CCWGG	2 cut(s)	222, 321
Bst4CI	ACNGT	4 cut(s)	479, 716, 927, 977
Bst6I	CTCTTC	2 cut(s)	379, 610
BstC8I	GCNNGC	1 cut(s)	653
BstDEI	CTNAG	3 cut(s)	349, 727, 821
BstF5I	GGATG	2 cut(s)	427, 685
BstFNI	CGCG	2 cut(s)	519, 646
BstKTI	GATC	6 cut(s)	169, 244, 262, 487, 638, 875
BstMBI	GATC	6 cut(s)	166, 241, 259, 484, 635, 872
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	7 cut(s)	28, 222, 525, 534, 652, 676, 1020
BstNI	CCWGG	2 cut(s)	222, 321
BstPAI	GACNNNNGTC	1 cut(s)	520
BstSCI	CCNGG	3 cut(s)	124, 220, 319
BstSFI	CTRYAG	1 cut(s)	631
BstSLI	GKGCMC	1 cut(s)	775
BstUI	CGCG	2 cut(s)	519, 646
BstV1I	GCAGC	2 cut(s)	315, 939
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	2 cut(s)	635, 872
BstYI	RGATCY	2 cut(s)	635, 872
BstZI	CGGCCG	1 cut(s)	97
BsuRI	GGCC	7 cut(s)	99, 148, 225, 291, 400, 655, 773
BtsCI	GGATG	2 cut(s)	427, 685
BtsI	GCAGTG	1 cut(s)	572
BtsIMutI	CAGTG	1 cut(s)	572
Cac8I	GCNNGC	1 cut(s)	653
Cfr10I	RCCGGY	2 cut(s)	144, 556
Cfr13I	GGNCC	6 cut(s)	398, 654, 771, 772, 917, 944
CseI	GACGC	2 cut(s)	37, 525
Csp6I	GTAC	3 cut(s)	65, 475, 739
CspCI	CAANNNNNGTGG	4 cut(s)	888, 912, 923, 947
CviAII	CATG	7 cut(s)	251, 413, 427, 598, 680, 693, 734
CviQI	GTAC	3 cut(s)	65, 475, 739
DdeI	CTNAG	3 cut(s)	349, 727, 821
DpnI	GATC	6 cut(s)	168, 243, 261, 486, 637, 874
DpnII	GATC	6 cut(s)	166, 241, 259, 484, 635, 872
DraIII	CACNNNGTG	2 cut(s)	287, 833
EaeI	YGGCCR	2 cut(s)	97, 289
EagI	CGGCCG	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	379, 610
EarI	CTCTTC	2 cut(s)	379, 610
EclXI	CGGCCG	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	674
Eco24I	GRGCYC	2 cut(s)	126, 775
Eco31I	GGTCTC	1 cut(s)	705
Eco47I	GGWCC	2 cut(s)	917, 944
Eco52I	CGGCCG	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	220, 319
EcoT14I	CCWWGG	1 cut(s)	674
EcoT38I	GRGCYC	2 cut(s)	126, 775
ErhI	CCWWGG	1 cut(s)	674
Esp3I	CGTCTC	2 cut(s)	508, 993
FaeI	CATG	7 cut(s)	254, 416, 430, 601, 683, 696, 737
FaqI	GGGAC	2 cut(s)	54, 861
FatI	CATG	7 cut(s)	250, 412, 426, 597, 679, 692, 733
FauI	CCCGC	3 cut(s)	48, 675, 885
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	7 cut(s)	100, 108, 304, 671, 785, 953, 1015
FokI	GGATG	2 cut(s)	434, 672
FriOI	GRGCYC	2 cut(s)	126, 775
Fsp4HI	GCNGC	7 cut(s)	100, 108, 304, 671, 785, 953, 1015
FspBI	CTAG	3 cut(s)	213, 354, 747
GluI	GCNGC	7 cut(s)	100, 108, 304, 671, 785, 953, 1015
HaeIII	GGCC	7 cut(s)	99, 148, 225, 291, 400, 655, 773
HapII	CCGG	5 cut(s)	75, 111, 126, 145, 557
HgaI	GACGC	2 cut(s)	37, 525
Hin1II	CATG	7 cut(s)	254, 416, 430, 601, 683, 696, 737
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	2 cut(s)	521, 601
HpaII	CCGG	5 cut(s)	75, 111, 126, 145, 557
HphI	GGTGA	3 cut(s)	29, 191, 210
Hpy166II	GTNNAC	5 cut(s)	9, 191, 827, 920, 947
Hpy188I	TCNGA	4 cut(s)	166, 259, 730, 766
Hpy188III	TCNNGA	3 cut(s)	75, 140, 482
Hpy8I	GTNNAC	5 cut(s)	9, 191, 827, 920, 947
Hpy99I	CGWCG	3 cut(s)	31, 65, 231
HpyAV	CCTTC	6 cut(s)	159, 303, 411, 458, 593, 747
HpyCH4III	ACNGT	4 cut(s)	479, 716, 927, 977
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	5 cut(s)	454, 495, 537, 554, 955
HpyF10VI	GCNNNNNNNGC	7 cut(s)	28, 222, 525, 534, 652, 676, 1020
HpyF3I	CTNAG	3 cut(s)	349, 727, 821
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	7 cut(s)	254, 416, 430, 601, 683, 696, 737
Kpn2I	TCCGGA	1 cut(s)	74
Kzo9I	GATC	6 cut(s)	166, 241, 259, 484, 635, 872
LmnI	GCTCC	3 cut(s)	362, 792, 867
Lsp1109I	GCAGC	2 cut(s)	315, 939
LweI	GCATC	2 cut(s)	553, 770
MaeI	CTAG	3 cut(s)	213, 354, 747
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	4 cut(s)	140, 179, 971, 977
MalI	GATC	6 cut(s)	168, 243, 261, 486, 637, 874
MbiI	CCGCTC	1 cut(s)	787
MboI	GATC	6 cut(s)	166, 241, 259, 484, 635, 872
MboII	GAAGA	5 cut(s)	104, 251, 396, 578, 627
MflI	RGATCY	2 cut(s)	635, 872
MhlI	GDGCHC	3 cut(s)	126, 373, 775
MlyI	GAGTC	1 cut(s)	530
MroI	TCCGGA	1 cut(s)	74
MseI	TTAA	4 cut(s)	156, 264, 299, 624
MslI	CAYNNNNRTG	2 cut(s)	249, 549
MspA1I	CMGCKG	1 cut(s)	952
MspI	CCGG	5 cut(s)	75, 111, 126, 145, 557
MspR9I	CCNGG	3 cut(s)	126, 222, 321
MvaI	CCWGG	2 cut(s)	222, 321
MvnI	CGCG	2 cut(s)	519, 646
MwoI	GCNNNNNNNGC	7 cut(s)	28, 222, 525, 534, 652, 676, 1020
NciI	CCSGG	1 cut(s)	126
NdeII	GATC	6 cut(s)	166, 241, 259, 484, 635, 872
NlaIII	CATG	7 cut(s)	254, 416, 430, 601, 683, 696, 737
NlaIV	GGNNCC	1 cut(s)	773
NmuCI	GTSAC	4 cut(s)	140, 179, 971, 977
PcsI	WCGNNNNNNNCGW	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	601
Pfl23II	CGTACG	1 cut(s)	64
PflMI	CCANNNNNTGG	2 cut(s)	287, 833
PkrI	GCNGC	7 cut(s)	101, 109, 305, 672, 786, 954, 1016
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
PshAI	GACNNNNGTC	1 cut(s)	520
Psp6I	CCWGG	2 cut(s)	220, 319
PspGI	CCWGG	2 cut(s)	220, 319
PspLI	CGTACG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	773
PspOMI	GGGCCC	1 cut(s)	771
PspPI	GGNCC	6 cut(s)	398, 654, 771, 772, 917, 944
PsuI	RGATCY	2 cut(s)	635, 872
RsaI	GTAC	3 cut(s)	66, 476, 740
RsaNI	GTAC	3 cut(s)	65, 475, 739
RseI	CAYNNNNRTG	2 cut(s)	249, 549
SalI	GTCGAC	1 cut(s)	7
SaqAI	TTAA	4 cut(s)	156, 264, 299, 624
SatI	GCNGC	7 cut(s)	100, 108, 304, 671, 785, 953, 1015
Sau3AI	GATC	6 cut(s)	166, 241, 259, 484, 635, 872
Sau96I	GGNCC	6 cut(s)	398, 654, 771, 772, 917, 944
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	3 cut(s)	126, 222, 321
SduI	GDGCHC	3 cut(s)	126, 373, 775
SfaNI	GCATC	2 cut(s)	553, 770
SfcI	CTRYAG	1 cut(s)	631
SinI	GGWCC	2 cut(s)	917, 944
SmiMI	CAYNNNNRTG	2 cut(s)	249, 549
SspMI	CTAG	3 cut(s)	213, 354, 747
StyD4I	CCNGG	3 cut(s)	124, 220, 319
StyI	CCWWGG	1 cut(s)	674
TaaI	ACNGT	4 cut(s)	479, 716, 927, 977
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	2 cut(s)	8, 382
TauI	GCSGC	5 cut(s)	102, 110, 673, 787, 1017
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	4 cut(s)	156, 264, 299, 624
Tru9I	TTAA	4 cut(s)	156, 264, 299, 624
TscAI	CASTG	1 cut(s)	579
TseFI	GTSAC	4 cut(s)	140, 179, 971, 977
TseI	GCWGC	2 cut(s)	303, 952
Tsp45I	GTSAC	4 cut(s)	140, 179, 971, 977
TspDTI	ATGAA	2 cut(s)	252, 614
TspRI	CASTG	1 cut(s)	579
Van91I	CCANNNNNTGG	2 cut(s)	287, 833
VpaK11BI	GGWCC	2 cut(s)	917, 944
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	3 cut(s)	213, 354, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.