Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007707

Physical Location & Seq

Genomic Coordinates Forward (+)

14406732 .. 14407774

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1181500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGGGTCAAGGGACAAAGACCCAAAGGCACCGCATCATCAGCCTCTTCTCAGCAGCCTCGTCGTGCGGCCCTCCACCAGCGACGGCGCCAGTGGTGGAGGTGGACGTGGCAGCGATTACGAGCCCGGTGAGGTTCGCCACGAGCCTCTTCCCTACACTCGTTCGGATCGTTACTCTAAAGACCCTGCTCTGAATGTGCCTGCAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1901796 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

71

Amino Acids

7.51

Weight (kDa)

8.16

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28990 AT4G28990
fragaria_vesca	FvH4_1g04330
malus_domestica	MD02G1042900.v1.1 MD15G1181500.v1.1 MD15G1181700.v1.1
prunus_persica	Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1
pyrus_communis	pycom02g03570 pycom15g16390
rosa_chinensis	RchiOBHm_Chr2g0088791 RchiOBHm_Chr2g0088801 RchiOBHm_Chr2g0089981
rosa_laevigata	RLG00000016065
rosa_multiflora	Rmu_sc0000226.1_g000022
rosa_roxburghii	Rroxscaffold_2G00151490
rosa_rugosa	Rorug02G0004100
rosa_samantha	Rh2AG049300 Rh2AG049400 Rh2BG048200 Rh2CG050400 Rh2DG049500
rosa_wichuraiana	Rw2G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	28, 86
AciI	CCGC	2 cut(s)	32, 67
AclWI	GGATC	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	87
AjiI	CACGTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	54, 111
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	140
BanI	GGYRCC	2 cut(s)	28, 86
BanII	GRGCYC	1 cut(s)	126
BauI	CACGAG	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	66, 123
BceAI	ACGGC	1 cut(s)	100
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcnI	CCSGG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	90
BisI	GCNGC	3 cut(s)	55, 68, 112
BlsI	GCNGC	3 cut(s)	56, 69, 113
Bme1390I	CCNGG	1 cut(s)	126
BmgBI	CACGTC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	2 cut(s)	30, 88
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	66, 123
BshFI	GGCC	1 cut(s)	70
BshNI	GGYRCC	2 cut(s)	28, 86
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	2 cut(s)	32, 67
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	30, 88
BspPI	GGATC	1 cut(s)	174
BspT107I	GGYRCC	2 cut(s)	28, 86
BsrI	ACTGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	166
BssNI	GRCGYC	1 cut(s)	87
BssSI	CACGAG	1 cut(s)	140
Bst2BI	CACGAG	1 cut(s)	140
Bst6I	CTCTTC	2 cut(s)	51, 153
BstACI	GRCGYC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	50
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	66, 123
BsuRI	GGCC	1 cut(s)	70
BtrI	CACGTC	1 cut(s)	107
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	69
CviAII	CATG	1 cut(s)	210
CviJI	RGCY	5 cut(s)	43, 57, 70, 124, 145
CviKI_1	RGCY	5 cut(s)	43, 57, 70, 124, 145
DdeI	CTNAG	1 cut(s)	50
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eam1104I	CTCTTC	2 cut(s)	51, 153
EarI	CTCTTC	2 cut(s)	51, 153
Eco24I	GRGCYC	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	126
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
FaeI	CATG	1 cut(s)	213
FaiI	YATR	1 cut(s)	211
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	1 cut(s)	209
Fnu4HI	GCNGC	3 cut(s)	55, 68, 112
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	3 cut(s)	55, 68, 112
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	3 cut(s)	55, 68, 112
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	1 cut(s)	126
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	213
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	166, 192
Hpy8I	GTNNAC	1 cut(s)	104
Hpy99I	CGWCG	2 cut(s)	65, 86
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	106
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	213
HspAI	GCGC	1 cut(s)	87
KasI	GGCGCC	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	4 cut(s)	91, 103, 139, 198
Lsp1109I	GCAGC	2 cut(s)	66, 123
LweI	GCATC	1 cut(s)	43
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	38, 140
MhlI	GDGCHC	1 cut(s)	126
Mly113I	GGCGCC	1 cut(s)	87
MnlI	CCTC	6 cut(s)	54, 68, 82, 92, 124, 156
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	40
NarI	GGCGCC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	126
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	213
NlaIV	GGNNCC	2 cut(s)	30, 88
PcsI	WCGNNNNNNNCGW	1 cut(s)	166
PkrI	GCNGC	3 cut(s)	56, 69, 113
PluTI	GGCGCC	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	30, 88
PspPI	GGNCC	1 cut(s)	69
SatI	GCNGC	3 cut(s)	55, 68, 112
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	3 cut(s)	103, 109, 135
SfaNI	GCATC	1 cut(s)	43
SfoI	GGCGCC	1 cut(s)	88
SsiI	CCGC	2 cut(s)	32, 67
SspDI	GGCGCC	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	124
TaiI	ACGT	1 cut(s)	109
TauI	GCSGC	1 cut(s)	70
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	2 cut(s)	54, 111
TspRI	CASTG	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.