Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007707

Physical Location & Seq

Genomic Coordinates Forward (+)

3216639 .. 3218445

Gene Structure 1807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46410

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAAAATAGGTGTCTGGGCCTCATCTTGTGTATTGCCTATGGTTGCGGTGTTTTGGGGGTATTTTTATCAATTTTCATCAGTTCATGGGATTGATGATTATAGTGTCCGGCTCATATCCAGTAAGAGATTTATTTGCTGCCTATCAAGATTGGAAGTTAGAGAGGGATATGTGCTTAAGATGTTTGGAACATGCATGGTTCGAGCATTCTGGGAACTTACCATCACTAAACATTATAATGTTGGTTCATTGAAATTGGAACCAACAGTAACAGTAAGGCTGGTCTACTTGGGGATGTTGCTGGAAGATGAAAATTTAGGTCAACTGCAAATGATGGGAAATTCAGCGAGTTGGATGTATATAGTAACTTGTAAGAGTTTATGCTTCTCTGCAGTGCTAAATTGGGGAGCTTGTAGAGAAAAAGGCTGCAGAACCTTGGAACTTTTGGATTCCAACTCATTTAGAATTCACTTTGTAAGTTCTACAAAGTATAGTGACAGTGGCGATATAGTGATGGGGAGTTACTTATTCGGTTCTTTTCCTTGCAAGGATGGCTGCAAACTCAGAGTTTACGATGAAGCAACTGATTCTTGGAGCAAGCATATCGACAGTAAGATACATTTGGGTAACTCTAGGGCCTTGGAGGCAGCTTCCCTGGTTCCCCTTAACGGTAAACTTTGCATCATCCGAAATAATATGAGTATTTCACTTGTTGATGTTTCGAAATCAAATGATGCTGGTGGAGCAAGTGCTGAACATCTATGGGAAACTCTAGCAGGCAAAGGGCAGTTCAGGACAATGGTCACAAATCTGTGGTCAAGCCTTGCCGGCAGAAACCGCCTGAAAAGTCACATAGTTCACTGCCAGGTTCTTCAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

293

Amino Acids

32.8

Weight (kDa)

8.78

Isoelectric Point (pI)

28.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28990 AT4G28990
fragaria_vesca	FvH4_1g04330
malus_domestica	MD02G1042900.v1.1 MD15G1181500.v1.1 MD15G1181700.v1.1
prunus_persica	Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1
pyrus_communis	pycom02g03570 pycom15g16390
rosa_chinensis	RchiOBHm_Chr2g0088791 RchiOBHm_Chr2g0088801 RchiOBHm_Chr2g0089981
rosa_laevigata	RLG00000016065
rosa_multiflora	Rmu_sc0000226.1_g000022
rosa_roxburghii	Rroxscaffold_2G00151490
rosa_rugosa	Rorug02G0004100
rosa_samantha	Rh2AG049300 Rh2AG049400 Rh2BG048200 Rh2CG050400 Rh2DG049500
rosa_wichuraiana	Rw2G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	2 cut(s)	47, 838
AcsI	RAATTY	3 cut(s)	313, 340, 465
AfiI	CCNNNNNNNGG	1 cut(s)	668
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	253, 875
AjnI	CCWGG	2 cut(s)	654, 864
AluBI	AGCT	3 cut(s)	410, 650, 878
AluI	AGCT	3 cut(s)	410, 650, 878
AoxI	GGCC	2 cut(s)	18, 636
ApeKI	GCWGC	4 cut(s)	138, 426, 555, 647
ApoI	RAATTY	3 cut(s)	313, 340, 465
ArsI	GACNNNNNNTTYG	2 cut(s)	800, 832
AspS9I	GGNCC	2 cut(s)	18, 636
AsuII	TTCGAA	1 cut(s)	722
BbvI	GCAGC	4 cut(s)	125, 413, 542, 659
BccI	CCATC	4 cut(s)	230, 328, 508, 545
BcgI	CGANNNNNNTGC	2 cut(s)	586, 620
BciT130I	CCWGG	2 cut(s)	656, 866
BfaI	CTAG	2 cut(s)	633, 773
BfmI	CTRYAG	2 cut(s)	390, 427
BfrI	CTTAAG	1 cut(s)	176
BglI	GCCNNNNNGGC	2 cut(s)	644, 828
BisI	GCNGC	4 cut(s)	139, 427, 556, 648
BlsI	GCNGC	4 cut(s)	140, 428, 557, 649
Bme1390I	CCNGG	2 cut(s)	656, 866
BmgT120I	GGNCC	2 cut(s)	18, 636
BmiI	GGNNCC	2 cut(s)	261, 660
BmrFI	CCNGG	2 cut(s)	656, 866
BmsI	GCATC	2 cut(s)	690, 724
BoxI	GACNNNNGTC	1 cut(s)	800
Bpu14I	TTCGAA	1 cut(s)	722
BsaJI	CCNNGG	3 cut(s)	435, 639, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	668
Bse118I	RCCGGY	1 cut(s)	827
Bse1I	ACTGG	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	656, 866
BseDI	CCNNGG	3 cut(s)	435, 639, 654
BseGI	GGATG	4 cut(s)	300, 360, 556, 684
BseLI	CCNNNNNNNGG	1 cut(s)	668
BseMII	CTCAG	1 cut(s)	577
BseNI	ACTGG	1 cut(s)	120
BseXI	GCAGC	4 cut(s)	125, 413, 542, 659
BshFI	GGCC	2 cut(s)	20, 638
BsiSI	CCGG	2 cut(s)	109, 828
BslI	CCNNNNNNNGG	1 cut(s)	668
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	2 cut(s)	20, 638
Bsp119I	TTCGAA	1 cut(s)	722
BspACI	CCGC	2 cut(s)	47, 838
BspANI	GGCC	2 cut(s)	20, 638
BspCNI	CTCAG	1 cut(s)	576
BspLI	GGNNCC	2 cut(s)	261, 660
BspMAI	CTGCAG	2 cut(s)	394, 431
BspT104I	TTCGAA	1 cut(s)	722
BspTI	CTTAAG	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	827
BsrI	ACTGG	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	827
BssECI	CCNNGG	3 cut(s)	435, 639, 654
BssT1I	CCWWGG	2 cut(s)	435, 639
Bst2UI	CCWGG	2 cut(s)	656, 866
Bst4CI	ACNGT	5 cut(s)	268, 274, 500, 611, 671
BstAFI	CTTAAG	1 cut(s)	176
BstBI	TTCGAA	1 cut(s)	722
BstC8I	GCNNGC	3 cut(s)	599, 778, 829
BstDEI	CTNAG	2 cut(s)	563, 879
BstF5I	GGATG	4 cut(s)	300, 360, 556, 684
BstMWI	GCNNNNNNNGC	5 cut(s)	552, 644, 743, 828, 837
BstNI	CCWGG	2 cut(s)	656, 866
BstNSI	RCATGY	1 cut(s)	195
BstPAI	GACNNNNGTC	1 cut(s)	800
BstSCI	CCNGG	2 cut(s)	654, 864
BstSFI	CTRYAG	2 cut(s)	390, 427
BstV1I	GCAGC	4 cut(s)	125, 413, 542, 659
BsuRI	GGCC	2 cut(s)	20, 638
BtsCI	GGATG	4 cut(s)	300, 360, 556, 684
BtsI	GCAGTG	2 cut(s)	399, 859
BtsIMutI	CAGTG	3 cut(s)	399, 505, 859
Cac8I	GCNNGC	3 cut(s)	599, 778, 829
Cfr10I	RCCGGY	1 cut(s)	827
Cfr13I	GGNCC	2 cut(s)	18, 636
CviAII	CATG	3 cut(s)	86, 192, 196
DdeI	CTNAG	2 cut(s)	563, 879
Eco130I	CCWWGG	2 cut(s)	435, 639
EcoO109I	RGGNCCY	1 cut(s)	636
EcoRI	GAATTC	1 cut(s)	465
EcoRII	CCWGG	2 cut(s)	654, 864
EcoT14I	CCWWGG	2 cut(s)	435, 639
EcoT22I	ATGCAT	1 cut(s)	197
ErhI	CCWWGG	2 cut(s)	435, 639
FaeI	CATG	3 cut(s)	89, 195, 199
FatI	CATG	3 cut(s)	85, 191, 195
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	4 cut(s)	139, 427, 556, 648
FokI	GGATG	4 cut(s)	307, 367, 563, 671
Fsp4HI	GCNGC	4 cut(s)	139, 427, 556, 648
FspBI	CTAG	2 cut(s)	633, 773
GluI	GCNGC	4 cut(s)	139, 427, 556, 648
HaeIII	GGCC	2 cut(s)	20, 638
HapII	CCGG	2 cut(s)	109, 828
Hin1II	CATG	3 cut(s)	89, 195, 199
HincII	GTYRAC	1 cut(s)	323
HindII	GTYRAC	1 cut(s)	323
HindIII	AAGCTT	1 cut(s)	876
HinfI	GANTC	2 cut(s)	449, 587
HpaII	CCGG	2 cut(s)	109, 828
Hpy166II	GTNNAC	5 cut(s)	286, 323, 571, 674, 859
Hpy188I	TCNGA	2 cut(s)	566, 689
Hpy188III	TCNNGA	2 cut(s)	147, 793
Hpy8I	GTNNAC	5 cut(s)	286, 323, 571, 674, 859
HpyCH4III	ACNGT	5 cut(s)	268, 274, 500, 611, 671
HpyCH4V	TGCA	7 cut(s)	195, 328, 392, 429, 546, 558, 681
HpyF10VI	GCNNNNNNNGC	5 cut(s)	552, 644, 743, 828, 837
HpyF3I	CTNAG	2 cut(s)	563, 879
Hsp92II	CATG	3 cut(s)	89, 195, 199
KroI	GCCGGC	1 cut(s)	827
KroNI	GCCGGC	1 cut(s)	829
LmnI	GCTCC	3 cut(s)	407, 594, 743
Lsp1109I	GCAGC	4 cut(s)	125, 413, 542, 659
LweI	GCATC	2 cut(s)	690, 724
MaeI	CTAG	2 cut(s)	633, 773
MaeIII	GTNAC	7 cut(s)	268, 364, 494, 521, 626, 802, 848
MboII	GAAGA	2 cut(s)	317, 863
MluCI	AATT	6 cut(s)	71, 254, 313, 340, 400, 465
MmeI	TCCRAC	2 cut(s)	332, 477
MnlI	CCTC	3 cut(s)	31, 157, 637
Mph1103I	ATGCAT	1 cut(s)	197
MroNI	GCCGGC	1 cut(s)	827
MseI	TTAA	2 cut(s)	177, 666
MslI	CAYNNNNRTG	1 cut(s)	237
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	2 cut(s)	109, 828
MspR9I	CCNGG	2 cut(s)	656, 866
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	2 cut(s)	656, 866
MwoI	GCNNNNNNNGC	5 cut(s)	552, 644, 743, 828, 837
NaeI	GCCGGC	1 cut(s)	829
NgoMIV	GCCGGC	1 cut(s)	827
NlaIII	CATG	3 cut(s)	89, 195, 199
NlaIV	GGNNCC	2 cut(s)	261, 660
NmuCI	GTSAC	3 cut(s)	494, 802, 848
NsiI	ATGCAT	1 cut(s)	197
NspI	RCATGY	1 cut(s)	195
NspV	TTCGAA	1 cut(s)	722
PctI	GAATGC	1 cut(s)	206
PdiI	GCCGGC	1 cut(s)	829
PfeI	GAWTC	2 cut(s)	449, 587
PkrI	GCNGC	4 cut(s)	140, 428, 557, 649
PshAI	GACNNNNGTC	1 cut(s)	800
PsiI	TTATAA	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	654, 864
PspGI	CCWGG	2 cut(s)	654, 864
PspN4I	GGNNCC	2 cut(s)	261, 660
PspPI	GGNCC	2 cut(s)	18, 636
PstI	CTGCAG	2 cut(s)	394, 431
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	177, 666
SatI	GCNGC	4 cut(s)	139, 427, 556, 648
Sau96I	GGNCC	2 cut(s)	18, 636
ScrFI	CCNGG	2 cut(s)	656, 866
SetI	ASST	7 cut(s)	13, 322, 412, 437, 652, 870, 880
SfaNI	GCATC	2 cut(s)	690, 724
SfcI	CTRYAG	2 cut(s)	390, 427
SfuI	TTCGAA	1 cut(s)	722
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	6 cut(s)	71, 254, 313, 340, 400, 465
SsiI	CCGC	2 cut(s)	47, 838
SspMI	CTAG	2 cut(s)	633, 773
StyD4I	CCNGG	2 cut(s)	654, 864
StyI	CCWWGG	2 cut(s)	435, 639
TaaI	ACNGT	5 cut(s)	268, 274, 500, 611, 671
TaqI	TCGA	3 cut(s)	202, 606, 722
TasI	AATT	6 cut(s)	71, 254, 313, 340, 400, 465
TfiI	GAWTC	2 cut(s)	449, 587
Tru1I	TTAA	2 cut(s)	177, 666
Tru9I	TTAA	2 cut(s)	177, 666
TscAI	CASTG	3 cut(s)	399, 505, 866
TseFI	GTSAC	3 cut(s)	494, 802, 848
TseI	GCWGC	4 cut(s)	138, 426, 555, 647
Tsp45I	GTSAC	3 cut(s)	494, 802, 848
TspDTI	ATGAA	6 cut(s)	17, 66, 74, 237, 324, 591
TspRI	CASTG	3 cut(s)	399, 505, 866
Vha464I	CTTAAG	1 cut(s)	176
XapI	RAATTY	3 cut(s)	313, 340, 465
XceI	RCATGY	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	2 cut(s)	633, 773
Zsp2I	ATGCAT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.