Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007707

Physical Location & Seq

Genomic Coordinates Forward (+)

2396389 .. 2399075

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGGTCAAGGGACAAGGACCAAACCACACCGCATCATCAGCCTCTTCTCAGCAGCCTCGTCGTGCGGCCCTCCACCAGCGACGGCGCCGGCGGTGGAGGCGGTGGCCGTGGCAGCGATTACGAGCCCGGCGAGGTTCGCCGCGAGCCTCCTCCCTACACTCGCTCGGATCGTTACTCCGATGACCCTGGTTCAGAGTGCGTGCAGGTTCTGCTTCACCTGTACACCGCAGGGATGCGGATCATCGCTACAGCTCTGAGTATAATCAATCAGGGGCCCCCCTACGTGGGCGTGATTTTGGCAGTGCACGGGATTCTGGTAGATATCGAGACCGTTCACCCCATGATGCTCGAGGAAGGGGTGCTGGCAGGCCATTTGGTAGAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1901796 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

130

Amino Acids

13.72

Weight (kDa)

5.18

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28990 AT4G28990
fragaria_vesca	FvH4_1g04330
malus_domestica	MD02G1042900.v1.1 MD15G1181500.v1.1 MD15G1181700.v1.1
prunus_persica	Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1
pyrus_communis	pycom02g03570 pycom15g16390
rosa_chinensis	RchiOBHm_Chr2g0088791 RchiOBHm_Chr2g0088801 RchiOBHm_Chr2g0089981
rosa_laevigata	RLG00000016065
rosa_multiflora	Rmu_sc0000226.1_g000022
rosa_roxburghii	Rroxscaffold_2G00151490
rosa_rugosa	Rorug02G0004100
rosa_samantha	Rh2AG049300 Rh2AG049400 Rh2BG048200 Rh2CG050400 Rh2DG049500
rosa_wichuraiana	Rw2G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	86
AccII	CGCG	1 cut(s)	144
AciI	CCGC	7 cut(s)	32, 67, 93, 102, 142, 228, 238
AclWI	GGATC	2 cut(s)	177, 248
AcoI	YGGCCR	1 cut(s)	106
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	286, 287
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	1 cut(s)	323
Alw44I	GTGCAC	1 cut(s)	305
AlwI	GGATC	2 cut(s)	177, 248
AlwNI	CAGNNNCTG	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	4 cut(s)	68, 106, 275, 370
ApaI	GGGCCC	1 cut(s)	279
ApaLI	GTGCAC	1 cut(s)	305
ApeKI	GCWGC	2 cut(s)	54, 114
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	4 cut(s)	19, 69, 275, 276
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	209, 329
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	19
BaeGI	GKGCMC	2 cut(s)	279, 309
BanI	GGYRCC	1 cut(s)	86
BanII	GRGCYC	2 cut(s)	129, 279
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	66, 126
BceAI	ACGGC	2 cut(s)	93, 100
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	4 cut(s)	55, 68, 115, 142
BlsI	GCNGC	4 cut(s)	56, 69, 116, 143
Bme1390I	CCNGG	2 cut(s)	129, 189
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	4 cut(s)	19, 69, 275, 276
BmiI	GGNNCC	4 cut(s)	88, 276, 277, 278
BmrFI	CCNGG	2 cut(s)	129, 189
BmsI	GCATC	3 cut(s)	43, 225, 336
BpuMI	CCSGG	1 cut(s)	129
BsaAI	YACGTR	1 cut(s)	286
BsaBI	GATNNNNATC	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	109, 187
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 287
Bse118I	RCCGGY	1 cut(s)	89
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	109, 187
BseGI	GGATG	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	2 cut(s)	286, 287
BseMII	CTCAG	2 cut(s)	64, 248
BseRI	GAGGAG	1 cut(s)	141
BseSI	GKGCMC	2 cut(s)	279, 309
BseXI	GCAGC	2 cut(s)	66, 126
BsgI	GTGCAG	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	4 cut(s)	70, 108, 277, 372
BshNI	GGYRCC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	90, 129
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	286, 287
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	4 cut(s)	70, 108, 277, 372
Bso31I	GGTCTC	1 cut(s)	323
BsoBI	CYCGRG	1 cut(s)	350
Bsp120I	GGGCCC	1 cut(s)	275
Bsp1286I	GDGCHC	3 cut(s)	129, 279, 309
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	169, 240
BspACI	CCGC	7 cut(s)	32, 67, 93, 102, 142, 228, 238
BspANI	GGCC	4 cut(s)	70, 108, 277, 372
BspCNI	CTCAG	2 cut(s)	63, 249
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	4 cut(s)	88, 276, 277, 278
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	2 cut(s)	177, 248
BspT107I	GGYRCC	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	109, 187
BssMI	GATC	2 cut(s)	169, 240
BssNI	GRCGYC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	211
BstAUI	TGTACA	1 cut(s)	222
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	5 cut(s)	91, 146, 203, 366, 370
BstDEI	CTNAG	2 cut(s)	50, 257
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	172, 243
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	169, 240
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 99, 114, 138, 211
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	2 cut(s)	127, 187
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	2 cut(s)	279, 309
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	66, 126
BsuRI	GGCC	4 cut(s)	70, 108, 277, 372
BtgI	CCRYGG	1 cut(s)	109
BtgZI	GCGATG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	240
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	5 cut(s)	91, 146, 203, 366, 370
CaiI	CAGNNNCTG	1 cut(s)	211
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	4 cut(s)	19, 69, 275, 276
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	9 cut(s)	43, 57, 70, 108, 127, 148, 254, 277, 372
CviKI_1	RGCY	9 cut(s)	43, 57, 70, 108, 127, 148, 254, 277, 372
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	2 cut(s)	50, 257
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	2 cut(s)	171, 242
DpnII	GATC	2 cut(s)	169, 240
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco24I	GRGCYC	2 cut(s)	129, 279
Eco31I	GGTCTC	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	350
EcoO109I	RGGNCCY	2 cut(s)	275, 276
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	325
EcoT38I	GRGCYC	2 cut(s)	129, 279
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
FaeI	CATG	1 cut(s)	346
FaiI	YATR	2 cut(s)	263, 344
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	1 cut(s)	342
Fnu4HI	GCNGC	4 cut(s)	55, 68, 115, 142
FokI	GGATG	1 cut(s)	247
FriOI	GRGCYC	2 cut(s)	129, 279
Fsp4HI	GCNGC	4 cut(s)	55, 68, 115, 142
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	4 cut(s)	55, 68, 115, 142
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	4 cut(s)	70, 108, 277, 372
HapII	CCGG	2 cut(s)	90, 129
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	1 cut(s)	313
HpaII	CCGG	2 cut(s)	90, 129
HphI	GGTGA	2 cut(s)	209, 329
Hpy166II	GTNNAC	3 cut(s)	225, 307, 337
Hpy188I	TCNGA	4 cut(s)	169, 181, 196, 258
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	3 cut(s)	225, 307, 337
Hpy99I	CGWCG	2 cut(s)	65, 86
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	205, 307
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 99, 114, 138, 211
HpyF3I	CTNAG	2 cut(s)	50, 257
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	1 cut(s)	87
KasI	GGCGCC	1 cut(s)	86
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	169, 240
Lsp1109I	GCAGC	2 cut(s)	66, 126
LweI	GCATC	3 cut(s)	43, 225, 336
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	2 cut(s)	171, 242
MboI	GATC	2 cut(s)	169, 240
MboII	GAAGA	1 cut(s)	38
MhlI	GDGCHC	3 cut(s)	129, 279, 309
Mly113I	GGCGCC	1 cut(s)	87
MnlI	CCTC	9 cut(s)	54, 68, 82, 92, 127, 159, 162, 346, 376
MreI	CGCCGGCG	1 cut(s)	89
MroNI	GCCGGC	1 cut(s)	89
MspI	CCGG	2 cut(s)	90, 129
MspR9I	CCNGG	2 cut(s)	129, 189
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	5 cut(s)	40, 99, 114, 138, 211
NaeI	GCCGGC	1 cut(s)	91
NarI	GGCGCC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	2 cut(s)	169, 240
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	4 cut(s)	88, 276, 277, 278
PaeR7I	CTCGAG	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 169
PdiI	GCCGGC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	313
PkrI	GCNGC	4 cut(s)	56, 69, 116, 143
PluTI	GGCGCC	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	4 cut(s)	88, 276, 277, 278
PspOMI	GGGCCC	1 cut(s)	275
PspPI	GGNCC	4 cut(s)	19, 69, 275, 276
PspXI	VCTCGAGB	1 cut(s)	350
PstNI	CAGNNNCTG	1 cut(s)	211
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SatI	GCNGC	4 cut(s)	55, 68, 115, 142
Sau3AI	GATC	2 cut(s)	169, 240
Sau96I	GGNCC	4 cut(s)	19, 69, 275, 276
ScrFI	CCNGG	2 cut(s)	129, 189
SduI	GDGCHC	3 cut(s)	129, 279, 309
SetI	ASST	6 cut(s)	138, 210, 222, 256, 288, 387
SfaNI	GCATC	3 cut(s)	43, 225, 336
SfcI	CTRYAG	1 cut(s)	249
SfoI	GGCGCC	1 cut(s)	88
Sfr274I	CTCGAG	1 cut(s)	350
SgrAI	CRCCGGYG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	19
SlaI	CTCGAG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SsiI	CCGC	7 cut(s)	32, 67, 93, 102, 142, 228, 238
SspDI	GGCGCC	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	127, 187
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	327, 351
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	2 cut(s)	70, 144
TfiI	GAWTC	1 cut(s)	313
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	2 cut(s)	54, 114
TspRI	CASTG	1 cut(s)	309
VneI	GTGCAC	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	19
XhoI	CTCGAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.