Zinc finger domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G28990 AT4G28990 |
| fragaria_vesca | FvH4_1g04330 |
| malus_domestica | MD02G1042900.v1.1 MD15G1181500.v1.1 MD15G1181700.v1.1 |
| prunus_persica | Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1 |
| pyrus_communis | pycom02g03570 pycom15g16390 |
| rosa_chinensis | RchiOBHm_Chr2g0088791 RchiOBHm_Chr2g0088801 RchiOBHm_Chr2g0089981 |
| rosa_laevigata | RLG00000016065 |
| rosa_multiflora | Rmu_sc0000226.1_g000022 |
| rosa_roxburghii | Rroxscaffold_2G00151490 |
| rosa_rugosa | Rorug02G0004100 |
| rosa_samantha | Rh2AG049300 Rh2AG049400 Rh2BG048200 Rh2CG050400 Rh2DG049500 |
| rosa_wichuraiana | Rw2G004090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1017 |
| Acc36I | ACCTGC | 2 cut(s) | 194, 738 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 401, 683, 840 |
| AccII | CGCG | 4 cut(s) | 285, 307, 858, 1059 |
| AciI | CCGC | 8 cut(s) | 87, 226, 285, 307, 544, 858, 1004, 1059 |
| AclWI | GGATC | 5 cut(s) | 174, 176, 476, 629, 861 |
| AcoI | YGGCCR | 3 cut(s) | 103, 824, 946 |
| AdeI | CACNNNGTG | 1 cut(s) | 683 |
| AfaI | GTAC | 4 cut(s) | 155, 222, 521, 1031 |
| AgsI | TTSAA | 1 cut(s) | 658 |
| AjnI | CCWGG | 6 cut(s) | 184, 394, 400, 406, 553, 619 |
| AluBI | AGCT | 4 cut(s) | 101, 124, 654, 870 |
| AluI | AGCT | 4 cut(s) | 101, 124, 654, 870 |
| Alw21I | GWGCWC | 1 cut(s) | 126 |
| Alw26I | GTCTC | 3 cut(s) | 321, 459, 678 |
| AlwI | GGATC | 5 cut(s) | 174, 176, 476, 629, 861 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 209, 401 |
| ApeKI | GCWGC | 3 cut(s) | 54, 111, 935 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 890 |
| AspLEI | GCGC | 3 cut(s) | 307, 453, 719 |
| AsuC2I | CCSGG | 2 cut(s) | 582, 597 |
| AsuHPI | GGTGA | 3 cut(s) | 327, 434, 912 |
| AsuII | TTCGAA | 1 cut(s) | 894 |
| AvaII | GGWCC | 6 cut(s) | 19, 275, 551, 602, 623, 981 |
| BaeGI | GKGCMC | 1 cut(s) | 958 |
| BanII | GRGCYC | 1 cut(s) | 126 |
| BauI | CACGAG | 1 cut(s) | 681 |
| Bbv12I | GWGCWC | 1 cut(s) | 126 |
| BbvI | GCAGC | 3 cut(s) | 66, 123, 947 |
| BccI | CCATC | 5 cut(s) | 89, 383, 692, 768, 945 |
| BceAI | ACGGC | 3 cut(s) | 90, 100, 123 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 43, 77, 504, 538 |
| BciT130I | CCWGG | 6 cut(s) | 186, 396, 402, 408, 555, 621 |
| BclI | TGATCA | 1 cut(s) | 262 |
| BcnI | CCSGG | 2 cut(s) | 582, 597 |
| BcoDI | GTCTC | 3 cut(s) | 321, 459, 678 |
| BfaI | CTAG | 4 cut(s) | 348, 609, 693, 705 |
| BfmI | CTRYAG | 1 cut(s) | 667 |
| BfoI | RGCGCY | 1 cut(s) | 720 |
| BfuAI | ACCTGC | 2 cut(s) | 194, 738 |
| BisI | GCNGC | 4 cut(s) | 55, 112, 936, 1060 |
| BlsI | GCNGC | 4 cut(s) | 56, 113, 937, 1061 |
| BmcAI | AGTACT | 1 cut(s) | 521 |
| Bme1390I | CCNGG | 8 cut(s) | 186, 396, 402, 408, 555, 582, 597, 621 |
| Bme18I | GGWCC | 6 cut(s) | 19, 275, 551, 602, 623, 981 |
| BmiI | GGNNCC | 2 cut(s) | 277, 983 |
| BmrFI | CCNGG | 8 cut(s) | 186, 396, 402, 408, 555, 582, 597, 621 |
| BmsI | GCATC | 5 cut(s) | 43, 223, 714, 756, 1075 |
| BpmI | CTGGAG | 1 cut(s) | 612 |
| Bpu14I | TTCGAA | 1 cut(s) | 894 |
| BpuMI | CCSGG | 2 cut(s) | 582, 597 |
| Bsa29I | ATCGAT | 1 cut(s) | 244 |
| BsaBI | GATNNNNATC | 1 cut(s) | 237 |
| BsaI | GGTCTC | 1 cut(s) | 678 |
| BsaJI | CCNNGG | 9 cut(s) | 106, 395, 406, 407, 554, 619, 734, 834, 943 |
| BsaWI | WCCGGW | 1 cut(s) | 314 |
| Bse118I | RCCGGY | 2 cut(s) | 978, 1020 |
| Bse1I | ACTGG | 2 cut(s) | 473, 629 |
| Bse3DI | GCAATG | 1 cut(s) | 307 |
| Bse8I | GATNNNNATC | 1 cut(s) | 237 |
| BseBI | CCWGG | 6 cut(s) | 186, 396, 402, 408, 555, 621 |
| BseCI | ATCGAT | 1 cut(s) | 244 |
| BseDI | CCNNGG | 9 cut(s) | 106, 395, 406, 407, 554, 619, 734, 834, 943 |
| BseGI | GGATG | 2 cut(s) | 238, 729 |
| BseJI | GATNNNNATC | 1 cut(s) | 237 |
| BseMI | GCAATG | 1 cut(s) | 307 |
| BseMII | CTCAG | 3 cut(s) | 41, 164, 246 |
| BseNI | ACTGG | 2 cut(s) | 473, 629 |
| BseRI | GAGGAG | 2 cut(s) | 138, 903 |
| BseSI | GKGCMC | 1 cut(s) | 958 |
| BseXI | GCAGC | 3 cut(s) | 66, 123, 947 |
| BseYI | CCCAGC | 2 cut(s) | 687, 719 |
| BsgI | GTGCAG | 1 cut(s) | 222 |
| Bsh1236I | CGCG | 4 cut(s) | 285, 307, 858, 1059 |
| Bsh1285I | CGRYCG | 2 cut(s) | 289, 823 |
| BshVI | ATCGAT | 1 cut(s) | 244 |
| BsiEI | CGRYCG | 2 cut(s) | 289, 823 |
| BsiHKAI | GWGCWC | 1 cut(s) | 126 |
| BsiSI | CCGG | 6 cut(s) | 67, 315, 582, 597, 979, 1021 |
| BslFI | GGGAC | 3 cut(s) | 26, 261, 967 |
| BsmAI | GTCTC | 3 cut(s) | 321, 459, 678 |
| BsmFI | GGGAC | 3 cut(s) | 26, 261, 967 |
| BsmI | GAATGC | 2 cut(s) | 201, 890 |
| Bso31I | GGTCTC | 1 cut(s) | 678 |
| Bsp119I | TTCGAA | 1 cut(s) | 894 |
| Bsp1286I | GDGCHC | 2 cut(s) | 126, 958 |
| Bsp1407I | TGTACA | 2 cut(s) | 220, 1029 |
| Bsp19I | CCATGG | 1 cut(s) | 834 |
| BspACI | CCGC | 8 cut(s) | 87, 226, 285, 307, 544, 858, 1004, 1059 |
| BspCNI | CTCAG | 3 cut(s) | 42, 163, 247 |
| BspDI | ATCGAT | 1 cut(s) | 244 |
| BspFNI | CGCG | 4 cut(s) | 285, 307, 858, 1059 |
| BspLI | GGNNCC | 2 cut(s) | 277, 983 |
| BspMI | ACCTGC | 2 cut(s) | 194, 738 |
| BspPI | GGATC | 5 cut(s) | 174, 176, 476, 629, 861 |
| BspT104I | TTCGAA | 1 cut(s) | 894 |
| BspTNI | GGTCTC | 1 cut(s) | 678 |
| BsrDI | GCAATG | 1 cut(s) | 307 |
| BsrFI | RCCGGY | 2 cut(s) | 978, 1020 |
| BsrGI | TGTACA | 2 cut(s) | 220, 1029 |
| BsrI | ACTGG | 2 cut(s) | 473, 629 |
| BssAI | RCCGGY | 2 cut(s) | 978, 1020 |
| BssECI | CCNNGG | 9 cut(s) | 106, 395, 406, 407, 554, 619, 734, 834, 943 |
| BssSI | CACGAG | 1 cut(s) | 681 |
| BssT1I | CCWWGG | 2 cut(s) | 734, 834 |
| Bst2BI | CACGAG | 1 cut(s) | 681 |
| Bst2UI | CCWGG | 6 cut(s) | 186, 396, 402, 408, 555, 621 |
| Bst4CI | ACNGT | 2 cut(s) | 251, 944 |
| Bst6I | CTCTTC | 3 cut(s) | 51, 565, 766 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 209, 531 |
| BstAUI | TGTACA | 2 cut(s) | 220, 1029 |
| BstBI | TTCGAA | 1 cut(s) | 894 |
| BstC8I | GCNNGC | 3 cut(s) | 103, 201, 364 |
| BstDEI | CTNAG | 3 cut(s) | 50, 150, 255 |
| BstDSI | CCRYGG | 3 cut(s) | 106, 834, 943 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 570 |
| BstF5I | GGATG | 2 cut(s) | 238, 729 |
| BstFNI | CGCG | 4 cut(s) | 285, 307, 858, 1059 |
| BstH2I | RGCGCY | 1 cut(s) | 720 |
| BstHHI | GCGC | 3 cut(s) | 307, 453, 719 |
| BstMAI | GTCTC | 3 cut(s) | 321, 459, 678 |
| BstMCI | CGRYCG | 2 cut(s) | 289, 823 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 40, 111, 135, 209, 457, 531 |
| BstNI | CCWGG | 6 cut(s) | 186, 396, 402, 408, 555, 621 |
| BstSCI | CCNGG | 8 cut(s) | 184, 394, 400, 406, 553, 580, 595, 619 |
| BstSFI | CTRYAG | 1 cut(s) | 667 |
| BstSLI | GKGCMC | 1 cut(s) | 958 |
| BstUI | CGCG | 4 cut(s) | 285, 307, 858, 1059 |
| BstV1I | GCAGC | 3 cut(s) | 66, 123, 947 |
| BstX2I | RGATCY | 1 cut(s) | 481 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 461 |
| BstYI | RGATCY | 1 cut(s) | 481 |
| Bsu15I | ATCGAT | 1 cut(s) | 244 |
| BsuTUI | ATCGAT | 1 cut(s) | 244 |
| BtgI | CCRYGG | 3 cut(s) | 106, 834, 943 |
| BtgZI | GCGATG | 2 cut(s) | 15, 108 |
| BtsCI | GGATG | 2 cut(s) | 238, 729 |
| BveI | ACCTGC | 2 cut(s) | 194, 738 |
| Cac8I | GCNNGC | 3 cut(s) | 103, 201, 364 |
| CaiI | CAGNNNCTG | 2 cut(s) | 209, 401 |
| CfoI | GCGC | 3 cut(s) | 307, 453, 719 |
| Cfr10I | RCCGGY | 2 cut(s) | 978, 1020 |
| ClaI | ATCGAT | 1 cut(s) | 244 |
| CseI | GACGC | 1 cut(s) | 621 |
| Csp6I | GTAC | 4 cut(s) | 154, 221, 520, 1030 |
| CviAII | CATG | 4 cut(s) | 740, 835, 959, 1063 |
| CviQI | GTAC | 4 cut(s) | 154, 221, 520, 1030 |
| DdeI | CTNAG | 3 cut(s) | 50, 150, 255 |
| DraIII | CACNNNGTG | 1 cut(s) | 683 |
| EaeI | YGGCCR | 3 cut(s) | 103, 824, 946 |
| Eam1104I | CTCTTC | 3 cut(s) | 51, 565, 766 |
| EarI | CTCTTC | 3 cut(s) | 51, 565, 766 |
| Ecl136II | GAGCTC | 1 cut(s) | 124 |
| Eco130I | CCWWGG | 2 cut(s) | 734, 834 |
| Eco24I | GRGCYC | 1 cut(s) | 126 |
| Eco31I | GGTCTC | 1 cut(s) | 678 |
| Eco32I | GATATC | 1 cut(s) | 323 |
| Eco47I | GGWCC | 6 cut(s) | 19, 275, 551, 602, 623, 981 |
| Eco53kI | GAGCTC | 1 cut(s) | 124 |
| EcoICRI | GAGCTC | 1 cut(s) | 124 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 570 |
| EcoO109I | RGGNCCY | 1 cut(s) | 398 |
| EcoRII | CCWGG | 6 cut(s) | 184, 394, 400, 406, 553, 619 |
| EcoRV | GATATC | 1 cut(s) | 323 |
| EcoT14I | CCWWGG | 2 cut(s) | 734, 834 |
| EcoT22I | ATGCAT | 1 cut(s) | 1090 |
| EcoT38I | GRGCYC | 1 cut(s) | 126 |
| ErhI | CCWWGG | 2 cut(s) | 734, 834 |
| FaeI | CATG | 4 cut(s) | 743, 838, 962, 1066 |
| FaqI | GGGAC | 3 cut(s) | 26, 261, 967 |
| FatI | CATG | 4 cut(s) | 739, 834, 958, 1062 |
| FauI | CCCGC | 1 cut(s) | 300 |
| FbaI | TGATCA | 1 cut(s) | 262 |
| Fnu4HI | GCNGC | 4 cut(s) | 55, 112, 936, 1060 |
| FokI | GGATG | 2 cut(s) | 245, 736 |
| FriOI | GRGCYC | 1 cut(s) | 126 |
| Fsp4HI | GCNGC | 4 cut(s) | 55, 112, 936, 1060 |
| FspBI | CTAG | 4 cut(s) | 348, 609, 693, 705 |
| GlaI | GCGC | 3 cut(s) | 306, 452, 718 |
| GluI | GCNGC | 4 cut(s) | 55, 112, 936, 1060 |
| GsaI | CCCAGC | 2 cut(s) | 691, 723 |
| GsuI | CTGGAG | 1 cut(s) | 612 |
| HaeII | RGCGCY | 1 cut(s) | 720 |
| HapII | CCGG | 6 cut(s) | 67, 315, 582, 597, 979, 1021 |
| HgaI | GACGC | 1 cut(s) | 621 |
| HhaI | GCGC | 3 cut(s) | 307, 453, 719 |
| Hin1II | CATG | 4 cut(s) | 743, 838, 962, 1066 |
| Hin6I | GCGC | 3 cut(s) | 305, 451, 717 |
| HinP1I | GCGC | 3 cut(s) | 305, 451, 717 |
| HinfI | GANTC | 1 cut(s) | 311 |
| HpaII | CCGG | 6 cut(s) | 67, 315, 582, 597, 979, 1021 |
| HphI | GGTGA | 3 cut(s) | 327, 434, 912 |
| Hpy166II | GTNNAC | 2 cut(s) | 156, 223 |
| Hpy188I | TCNGA | 6 cut(s) | 51, 166, 256, 419, 765, 793 |
| Hpy188III | TCNNGA | 4 cut(s) | 290, 326, 479, 755 |
| Hpy8I | GTNNAC | 2 cut(s) | 156, 223 |
| Hpy99I | CGWCG | 2 cut(s) | 86, 1059 |
| HpyAV | CCTTC | 6 cut(s) | 348, 419, 642, 737, 855, 927 |
| HpyCH4III | ACNGT | 2 cut(s) | 251, 944 |
| HpyCH4V | TGCA | 6 cut(s) | 203, 236, 509, 525, 534, 1088 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 40, 111, 135, 209, 457, 531 |
| HpyF3I | CTNAG | 3 cut(s) | 50, 150, 255 |
| Hsp92II | CATG | 4 cut(s) | 743, 838, 962, 1066 |
| HspAI | GCGC | 3 cut(s) | 305, 451, 717 |
| Ksp22I | TGATCA | 1 cut(s) | 262 |
| LmnI | GCTCC | 2 cut(s) | 98, 651 |
| Lsp1109I | GCAGC | 3 cut(s) | 66, 123, 947 |
| LweI | GCATC | 5 cut(s) | 43, 223, 714, 756, 1075 |
| MaeI | CTAG | 4 cut(s) | 348, 609, 693, 705 |
| MaeIII | GTNAC | 1 cut(s) | 170 |
| MboII | GAAGA | 4 cut(s) | 38, 582, 783, 819 |
| MflI | RGATCY | 1 cut(s) | 481 |
| MhlI | GDGCHC | 2 cut(s) | 126, 958 |
| MluCI | AATT | 1 cut(s) | 1077 |
| MmeI | TCCRAC | 1 cut(s) | 762 |
| Mph1103I | ATGCAT | 1 cut(s) | 1090 |
| MroXI | GAANNNNTTC | 1 cut(s) | 890 |
| MseI | TTAA | 3 cut(s) | 876, 989, 1093 |
| MspI | CCGG | 6 cut(s) | 67, 315, 582, 597, 979, 1021 |
| MspR9I | CCNGG | 8 cut(s) | 186, 396, 402, 408, 555, 582, 597, 621 |
| Mva1269I | GAATGC | 2 cut(s) | 201, 890 |
| MvaI | CCWGG | 6 cut(s) | 186, 396, 402, 408, 555, 621 |
| MvnI | CGCG | 4 cut(s) | 285, 307, 858, 1059 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 40, 111, 135, 209, 457, 531 |
| NciI | CCSGG | 2 cut(s) | 582, 597 |
| NcoI | CCATGG | 1 cut(s) | 834 |
| NlaIII | CATG | 4 cut(s) | 743, 838, 962, 1066 |
| NlaIV | GGNNCC | 2 cut(s) | 277, 983 |
| NmeAIII | GCCGAG | 1 cut(s) | 105 |
| NsiI | ATGCAT | 1 cut(s) | 1090 |
| NspV | TTCGAA | 1 cut(s) | 894 |
| PasI | CCCWGGG | 1 cut(s) | 407 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 90, 126, 166, 1051 |
| PctI | GAATGC | 2 cut(s) | 201, 890 |
| PdmI | GAANNNNTTC | 1 cut(s) | 890 |
| PfeI | GAWTC | 1 cut(s) | 311 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 401, 683, 840 |
| PfoI | TCCNGGA | 1 cut(s) | 184 |
| PkrI | GCNGC | 4 cut(s) | 56, 113, 937, 1061 |
| Ple19I | CGATCG | 1 cut(s) | 823 |
| PsiI | TTATAA | 1 cut(s) | 1017 |
| Psp124BI | GAGCTC | 1 cut(s) | 126 |
| Psp6I | CCWGG | 6 cut(s) | 184, 394, 400, 406, 553, 619 |
| PspFI | CCCAGC | 2 cut(s) | 687, 719 |
| PspGI | CCWGG | 6 cut(s) | 184, 394, 400, 406, 553, 619 |
| PspN4I | GGNNCC | 2 cut(s) | 277, 983 |
| PstNI | CAGNNNCTG | 2 cut(s) | 209, 401 |
| PsuI | RGATCY | 1 cut(s) | 481 |
| PvuI | CGATCG | 1 cut(s) | 823 |
| RsaI | GTAC | 4 cut(s) | 155, 222, 521, 1031 |
| RsaNI | GTAC | 4 cut(s) | 154, 221, 520, 1030 |
| SacI | GAGCTC | 1 cut(s) | 126 |
| SaqAI | TTAA | 3 cut(s) | 876, 989, 1093 |
| SatI | GCNGC | 4 cut(s) | 55, 112, 936, 1060 |
| ScaI | AGTACT | 1 cut(s) | 521 |
| ScrFI | CCNGG | 8 cut(s) | 186, 396, 402, 408, 555, 582, 597, 621 |
| SduI | GDGCHC | 2 cut(s) | 126, 958 |
| SfaNI | GCATC | 5 cut(s) | 43, 223, 714, 756, 1075 |
| SfcI | CTRYAG | 1 cut(s) | 667 |
| SfuI | TTCGAA | 1 cut(s) | 894 |
| SinI | GGWCC | 6 cut(s) | 19, 275, 551, 602, 623, 981 |
| Sse9I | AATT | 1 cut(s) | 1077 |
| SsiI | CCGC | 8 cut(s) | 87, 226, 285, 307, 544, 858, 1004, 1059 |
| SspMI | CTAG | 4 cut(s) | 348, 609, 693, 705 |
| SstI | GAGCTC | 1 cut(s) | 126 |
| StyD4I | CCNGG | 8 cut(s) | 184, 394, 400, 406, 553, 580, 595, 619 |
| StyI | CCWWGG | 2 cut(s) | 734, 834 |
| TaaI | ACNGT | 2 cut(s) | 251, 944 |
| TaqI | TCGA | 6 cut(s) | 244, 325, 568, 819, 894, 1039 |
| TasI | AATT | 1 cut(s) | 1077 |
| TatI | WGTACW | 4 cut(s) | 153, 220, 519, 1029 |
| TauI | GCSGC | 1 cut(s) | 1062 |
| TfiI | GAWTC | 1 cut(s) | 311 |
| Tru1I | TTAA | 3 cut(s) | 876, 989, 1093 |
| Tru9I | TTAA | 3 cut(s) | 876, 989, 1093 |
| TseI | GCWGC | 3 cut(s) | 54, 111, 935 |
| TspDTI | ATGAA | 3 cut(s) | 258, 756, 894 |
| TspGWI | ACGGA | 2 cut(s) | 564, 898 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 401, 683, 840 |
| VpaK11BI | GGWCC | 6 cut(s) | 19, 275, 551, 602, 623, 981 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 570 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 684 |
| XmnI | GAANNNNTTC | 1 cut(s) | 890 |
| XspI | CTAG | 4 cut(s) | 348, 609, 693, 705 |
| ZrmI | AGTACT | 1 cut(s) | 521 |
| Zsp2I | ATGCAT | 1 cut(s) | 1090 |