Prupe.7G234000_v2.0.a1

Zinc finger domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
20387476 .. 20392038
4563 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G234000.2

Sequence Viewer

Length: 1095 bp
ATGGGGTCAAGGGACAAGGACCAAACGACATCGCATCATCAGCCTCTTCTGAGCAGCCTTGTCGTCCGGCCCTCCACCAGCGACGGCGGTGGCGATGGAGCTGGCCGTGGCAGCGATTACGAGCTCGGCGAGGTTCGCCGTGAGCCTCCTCAGTACACTCGTTCGGATCGTTACAACGATGATCCTGGATATAGAATGCGTGCAGGTTCTGCTTCTCCTGTACACCGCAGGGATGCAGATCATCGATACAGTTCTGAGTATGATCATTCATCTGGTCCCCTACGCGGTCGTGAGTTTGGCAATGCGCGGGATTCCGGTAGATATCGAGACAACTCACCCCATTATGCTAGAGGAAGGGGTGCTGGCAGACCATTCAGTAGAGGTTTAGATGGGCCAGGGCCTGGCCCTGGGCCATTCAGAGGTGAAGGGAGTAGAAATAATCCAAATGTGCGCCAAAGGCTTGGAGACTGGATTTGTCCAGATCCTTTATGTGGCAACCTGAACTTTGCAAGGCGAGAGTACTGCAACAACTGCAACAAGTTCCGCTACGGACCTGGGGGAAGTCCTCGAAGAGGTTATCCCGGCCCACCACCTCCCGGTGGTCCTCCTAGACGCTTCCCTGGTCCTCCAGTTGATCCTCCACTTGGAAGGAGCTTGAATGGTGGCTATAGGTCTCCACCTCGTGGCTGGGCTAGAGATGGCCCTAGAGATTTTGGCGCTGGGATGCCACCTCCAAGGCATGAAGGCAGGTTTCCTGACCATCAGATGCGAAGAGATCGGTTGGATTACTCGGACAACCATAGAGGAAGAACCAAGTTCGATCGGCCAATGCCCATGGATTGGGGTAATAGGGATCGCGGAAGGGATAGCTTCTTTAATGAACGGAAAGCATTCGAAAGGCGACTGCCCTCTCCTCCTTCACCACCACCACCAGCAGCCCACCGTGGCCGATGGGCACATGATGTTAGAGAGAGAAGCCGGTCCCCATTAAGGGGTGGCCCACCGCCAAAAGATTATAACCGGCCTATGTACATTGATCGAGGACGAGATGATCGTCGCGGCATGGGGCGAGGCCGAATTGGAGATGCATATTAA

Protein Analysis

365

Amino Acids

40.95

Weight (kDa)

10.66

Isoelectric Point (pI)

57.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1017
Acc36I ACCTGC 2 cut(s) 194, 738
AccB7I CCANNNNNTGG 3 cut(s) 401, 683, 840
AccII CGCG 4 cut(s) 285, 307, 858, 1059
AciI CCGC 8 cut(s) 87, 226, 285, 307, 544, 858, 1004, 1059
AclWI GGATC 5 cut(s) 174, 176, 476, 629, 861
AcoI YGGCCR 3 cut(s) 103, 824, 946
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 4 cut(s) 155, 222, 521, 1031
AgsI TTSAA 1 cut(s) 658
AjnI CCWGG 6 cut(s) 184, 394, 400, 406, 553, 619
AluBI AGCT 4 cut(s) 101, 124, 654, 870
AluI AGCT 4 cut(s) 101, 124, 654, 870
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 3 cut(s) 321, 459, 678
AlwI GGATC 5 cut(s) 174, 176, 476, 629, 861
AlwNI CAGNNNCTG 2 cut(s) 209, 401
ApeKI GCWGC 3 cut(s) 54, 111, 935
Asp700I GAANNNNTTC 1 cut(s) 890
AspLEI GCGC 3 cut(s) 307, 453, 719
AsuC2I CCSGG 2 cut(s) 582, 597
AsuHPI GGTGA 3 cut(s) 327, 434, 912
AsuII TTCGAA 1 cut(s) 894
AvaII GGWCC 6 cut(s) 19, 275, 551, 602, 623, 981
BaeGI GKGCMC 1 cut(s) 958
BanII GRGCYC 1 cut(s) 126
BauI CACGAG 1 cut(s) 681
Bbv12I GWGCWC 1 cut(s) 126
BbvI GCAGC 3 cut(s) 66, 123, 947
BccI CCATC 5 cut(s) 89, 383, 692, 768, 945
BceAI ACGGC 3 cut(s) 90, 100, 123
BcgI CGANNNNNNTGC 4 cut(s) 43, 77, 504, 538
BciT130I CCWGG 6 cut(s) 186, 396, 402, 408, 555, 621
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 2 cut(s) 582, 597
BcoDI GTCTC 3 cut(s) 321, 459, 678
BfaI CTAG 4 cut(s) 348, 609, 693, 705
BfmI CTRYAG 1 cut(s) 667
BfoI RGCGCY 1 cut(s) 720
BfuAI ACCTGC 2 cut(s) 194, 738
BisI GCNGC 4 cut(s) 55, 112, 936, 1060
BlsI GCNGC 4 cut(s) 56, 113, 937, 1061
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 8 cut(s) 186, 396, 402, 408, 555, 582, 597, 621
Bme18I GGWCC 6 cut(s) 19, 275, 551, 602, 623, 981
BmiI GGNNCC 2 cut(s) 277, 983
BmrFI CCNGG 8 cut(s) 186, 396, 402, 408, 555, 582, 597, 621
BmsI GCATC 5 cut(s) 43, 223, 714, 756, 1075
BpmI CTGGAG 1 cut(s) 612
Bpu14I TTCGAA 1 cut(s) 894
BpuMI CCSGG 2 cut(s) 582, 597
Bsa29I ATCGAT 1 cut(s) 244
BsaBI GATNNNNATC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 678
BsaJI CCNNGG 9 cut(s) 106, 395, 406, 407, 554, 619, 734, 834, 943
BsaWI WCCGGW 1 cut(s) 314
Bse118I RCCGGY 2 cut(s) 978, 1020
Bse1I ACTGG 2 cut(s) 473, 629
Bse3DI GCAATG 1 cut(s) 307
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 6 cut(s) 186, 396, 402, 408, 555, 621
BseCI ATCGAT 1 cut(s) 244
BseDI CCNNGG 9 cut(s) 106, 395, 406, 407, 554, 619, 734, 834, 943
BseGI GGATG 2 cut(s) 238, 729
BseJI GATNNNNATC 1 cut(s) 237
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 3 cut(s) 41, 164, 246
BseNI ACTGG 2 cut(s) 473, 629
BseRI GAGGAG 2 cut(s) 138, 903
BseSI GKGCMC 1 cut(s) 958
BseXI GCAGC 3 cut(s) 66, 123, 947
BseYI CCCAGC 2 cut(s) 687, 719
BsgI GTGCAG 1 cut(s) 222
Bsh1236I CGCG 4 cut(s) 285, 307, 858, 1059
Bsh1285I CGRYCG 2 cut(s) 289, 823
BshVI ATCGAT 1 cut(s) 244
BsiEI CGRYCG 2 cut(s) 289, 823
BsiHKAI GWGCWC 1 cut(s) 126
BsiSI CCGG 6 cut(s) 67, 315, 582, 597, 979, 1021
BslFI GGGAC 3 cut(s) 26, 261, 967
BsmAI GTCTC 3 cut(s) 321, 459, 678
BsmFI GGGAC 3 cut(s) 26, 261, 967
BsmI GAATGC 2 cut(s) 201, 890
Bso31I GGTCTC 1 cut(s) 678
Bsp119I TTCGAA 1 cut(s) 894
Bsp1286I GDGCHC 2 cut(s) 126, 958
Bsp1407I TGTACA 2 cut(s) 220, 1029
Bsp19I CCATGG 1 cut(s) 834
BspACI CCGC 8 cut(s) 87, 226, 285, 307, 544, 858, 1004, 1059
BspCNI CTCAG 3 cut(s) 42, 163, 247
BspDI ATCGAT 1 cut(s) 244
BspFNI CGCG 4 cut(s) 285, 307, 858, 1059
BspLI GGNNCC 2 cut(s) 277, 983
BspMI ACCTGC 2 cut(s) 194, 738
BspPI GGATC 5 cut(s) 174, 176, 476, 629, 861
BspT104I TTCGAA 1 cut(s) 894
BspTNI GGTCTC 1 cut(s) 678
BsrDI GCAATG 1 cut(s) 307
BsrFI RCCGGY 2 cut(s) 978, 1020
BsrGI TGTACA 2 cut(s) 220, 1029
BsrI ACTGG 2 cut(s) 473, 629
BssAI RCCGGY 2 cut(s) 978, 1020
BssECI CCNNGG 9 cut(s) 106, 395, 406, 407, 554, 619, 734, 834, 943
BssSI CACGAG 1 cut(s) 681
BssT1I CCWWGG 2 cut(s) 734, 834
Bst2BI CACGAG 1 cut(s) 681
Bst2UI CCWGG 6 cut(s) 186, 396, 402, 408, 555, 621
Bst4CI ACNGT 2 cut(s) 251, 944
Bst6I CTCTTC 3 cut(s) 51, 565, 766
BstAPI GCANNNNNTGC 2 cut(s) 209, 531
BstAUI TGTACA 2 cut(s) 220, 1029
BstBI TTCGAA 1 cut(s) 894
BstC8I GCNNGC 3 cut(s) 103, 201, 364
BstDEI CTNAG 3 cut(s) 50, 150, 255
BstDSI CCRYGG 3 cut(s) 106, 834, 943
BstENI CCTNNNNNAGG 1 cut(s) 570
BstF5I GGATG 2 cut(s) 238, 729
BstFNI CGCG 4 cut(s) 285, 307, 858, 1059
BstH2I RGCGCY 1 cut(s) 720
BstHHI GCGC 3 cut(s) 307, 453, 719
BstMAI GTCTC 3 cut(s) 321, 459, 678
BstMCI CGRYCG 2 cut(s) 289, 823
BstMWI GCNNNNNNNGC 6 cut(s) 40, 111, 135, 209, 457, 531
BstNI CCWGG 6 cut(s) 186, 396, 402, 408, 555, 621
BstSCI CCNGG 8 cut(s) 184, 394, 400, 406, 553, 580, 595, 619
BstSFI CTRYAG 1 cut(s) 667
BstSLI GKGCMC 1 cut(s) 958
BstUI CGCG 4 cut(s) 285, 307, 858, 1059
BstV1I GCAGC 3 cut(s) 66, 123, 947
BstX2I RGATCY 1 cut(s) 481
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 1 cut(s) 481
Bsu15I ATCGAT 1 cut(s) 244
BsuTUI ATCGAT 1 cut(s) 244
BtgI CCRYGG 3 cut(s) 106, 834, 943
BtgZI GCGATG 2 cut(s) 15, 108
BtsCI GGATG 2 cut(s) 238, 729
BveI ACCTGC 2 cut(s) 194, 738
Cac8I GCNNGC 3 cut(s) 103, 201, 364
CaiI CAGNNNCTG 2 cut(s) 209, 401
CfoI GCGC 3 cut(s) 307, 453, 719
Cfr10I RCCGGY 2 cut(s) 978, 1020
ClaI ATCGAT 1 cut(s) 244
CseI GACGC 1 cut(s) 621
Csp6I GTAC 4 cut(s) 154, 221, 520, 1030
CviAII CATG 4 cut(s) 740, 835, 959, 1063
CviQI GTAC 4 cut(s) 154, 221, 520, 1030
DdeI CTNAG 3 cut(s) 50, 150, 255
DraIII CACNNNGTG 1 cut(s) 683
EaeI YGGCCR 3 cut(s) 103, 824, 946
Eam1104I CTCTTC 3 cut(s) 51, 565, 766
EarI CTCTTC 3 cut(s) 51, 565, 766
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 734, 834
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 678
Eco32I GATATC 1 cut(s) 323
Eco47I GGWCC 6 cut(s) 19, 275, 551, 602, 623, 981
Eco53kI GAGCTC 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 570
EcoO109I RGGNCCY 1 cut(s) 398
EcoRII CCWGG 6 cut(s) 184, 394, 400, 406, 553, 619
EcoRV GATATC 1 cut(s) 323
EcoT14I CCWWGG 2 cut(s) 734, 834
EcoT22I ATGCAT 1 cut(s) 1090
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 2 cut(s) 734, 834
FaeI CATG 4 cut(s) 743, 838, 962, 1066
FaqI GGGAC 3 cut(s) 26, 261, 967
FatI CATG 4 cut(s) 739, 834, 958, 1062
FauI CCCGC 1 cut(s) 300
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 4 cut(s) 55, 112, 936, 1060
FokI GGATG 2 cut(s) 245, 736
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 4 cut(s) 55, 112, 936, 1060
FspBI CTAG 4 cut(s) 348, 609, 693, 705
GlaI GCGC 3 cut(s) 306, 452, 718
GluI GCNGC 4 cut(s) 55, 112, 936, 1060
GsaI CCCAGC 2 cut(s) 691, 723
GsuI CTGGAG 1 cut(s) 612
HaeII RGCGCY 1 cut(s) 720
HapII CCGG 6 cut(s) 67, 315, 582, 597, 979, 1021
HgaI GACGC 1 cut(s) 621
HhaI GCGC 3 cut(s) 307, 453, 719
Hin1II CATG 4 cut(s) 743, 838, 962, 1066
Hin6I GCGC 3 cut(s) 305, 451, 717
HinP1I GCGC 3 cut(s) 305, 451, 717
HinfI GANTC 1 cut(s) 311
HpaII CCGG 6 cut(s) 67, 315, 582, 597, 979, 1021
HphI GGTGA 3 cut(s) 327, 434, 912
Hpy166II GTNNAC 2 cut(s) 156, 223
Hpy188I TCNGA 6 cut(s) 51, 166, 256, 419, 765, 793
Hpy188III TCNNGA 4 cut(s) 290, 326, 479, 755
Hpy8I GTNNAC 2 cut(s) 156, 223
Hpy99I CGWCG 2 cut(s) 86, 1059
HpyAV CCTTC 6 cut(s) 348, 419, 642, 737, 855, 927
HpyCH4III ACNGT 2 cut(s) 251, 944
HpyCH4V TGCA 6 cut(s) 203, 236, 509, 525, 534, 1088
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 111, 135, 209, 457, 531
HpyF3I CTNAG 3 cut(s) 50, 150, 255
Hsp92II CATG 4 cut(s) 743, 838, 962, 1066
HspAI GCGC 3 cut(s) 305, 451, 717
Ksp22I TGATCA 1 cut(s) 262
LmnI GCTCC 2 cut(s) 98, 651
Lsp1109I GCAGC 3 cut(s) 66, 123, 947
LweI GCATC 5 cut(s) 43, 223, 714, 756, 1075
MaeI CTAG 4 cut(s) 348, 609, 693, 705
MaeIII GTNAC 1 cut(s) 170
MboII GAAGA 4 cut(s) 38, 582, 783, 819
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 2 cut(s) 126, 958
MluCI AATT 1 cut(s) 1077
MmeI TCCRAC 1 cut(s) 762
Mph1103I ATGCAT 1 cut(s) 1090
MroXI GAANNNNTTC 1 cut(s) 890
MseI TTAA 3 cut(s) 876, 989, 1093
MspI CCGG 6 cut(s) 67, 315, 582, 597, 979, 1021
MspR9I CCNGG 8 cut(s) 186, 396, 402, 408, 555, 582, 597, 621
Mva1269I GAATGC 2 cut(s) 201, 890
MvaI CCWGG 6 cut(s) 186, 396, 402, 408, 555, 621
MvnI CGCG 4 cut(s) 285, 307, 858, 1059
MwoI GCNNNNNNNGC 6 cut(s) 40, 111, 135, 209, 457, 531
NciI CCSGG 2 cut(s) 582, 597
NcoI CCATGG 1 cut(s) 834
NlaIII CATG 4 cut(s) 743, 838, 962, 1066
NlaIV GGNNCC 2 cut(s) 277, 983
NmeAIII GCCGAG 1 cut(s) 105
NsiI ATGCAT 1 cut(s) 1090
NspV TTCGAA 1 cut(s) 894
PasI CCCWGGG 1 cut(s) 407
PcsI WCGNNNNNNNCGW 4 cut(s) 90, 126, 166, 1051
PctI GAATGC 2 cut(s) 201, 890
PdmI GAANNNNTTC 1 cut(s) 890
PfeI GAWTC 1 cut(s) 311
PflMI CCANNNNNTGG 3 cut(s) 401, 683, 840
PfoI TCCNGGA 1 cut(s) 184
PkrI GCNGC 4 cut(s) 56, 113, 937, 1061
Ple19I CGATCG 1 cut(s) 823
PsiI TTATAA 1 cut(s) 1017
Psp124BI GAGCTC 1 cut(s) 126
Psp6I CCWGG 6 cut(s) 184, 394, 400, 406, 553, 619
PspFI CCCAGC 2 cut(s) 687, 719
PspGI CCWGG 6 cut(s) 184, 394, 400, 406, 553, 619
PspN4I GGNNCC 2 cut(s) 277, 983
PstNI CAGNNNCTG 2 cut(s) 209, 401
PsuI RGATCY 1 cut(s) 481
PvuI CGATCG 1 cut(s) 823
RsaI GTAC 4 cut(s) 155, 222, 521, 1031
RsaNI GTAC 4 cut(s) 154, 221, 520, 1030
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 3 cut(s) 876, 989, 1093
SatI GCNGC 4 cut(s) 55, 112, 936, 1060
ScaI AGTACT 1 cut(s) 521
ScrFI CCNGG 8 cut(s) 186, 396, 402, 408, 555, 582, 597, 621
SduI GDGCHC 2 cut(s) 126, 958
SfaNI GCATC 5 cut(s) 43, 223, 714, 756, 1075
SfcI CTRYAG 1 cut(s) 667
SfuI TTCGAA 1 cut(s) 894
SinI GGWCC 6 cut(s) 19, 275, 551, 602, 623, 981
Sse9I AATT 1 cut(s) 1077
SsiI CCGC 8 cut(s) 87, 226, 285, 307, 544, 858, 1004, 1059
SspMI CTAG 4 cut(s) 348, 609, 693, 705
SstI GAGCTC 1 cut(s) 126
StyD4I CCNGG 8 cut(s) 184, 394, 400, 406, 553, 580, 595, 619
StyI CCWWGG 2 cut(s) 734, 834
TaaI ACNGT 2 cut(s) 251, 944
TaqI TCGA 6 cut(s) 244, 325, 568, 819, 894, 1039
TasI AATT 1 cut(s) 1077
TatI WGTACW 4 cut(s) 153, 220, 519, 1029
TauI GCSGC 1 cut(s) 1062
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 3 cut(s) 876, 989, 1093
Tru9I TTAA 3 cut(s) 876, 989, 1093
TseI GCWGC 3 cut(s) 54, 111, 935
TspDTI ATGAA 3 cut(s) 258, 756, 894
TspGWI ACGGA 2 cut(s) 564, 898
Van91I CCANNNNNTGG 3 cut(s) 401, 683, 840
VpaK11BI GGWCC 6 cut(s) 19, 275, 551, 602, 623, 981
XagI CCTNNNNNAGG 1 cut(s) 570
XcmI CCANNNNNNNNNTGG 1 cut(s) 684
XmnI GAANNNNTTC 1 cut(s) 890
XspI CTAG 4 cut(s) 348, 609, 693, 705
ZrmI AGTACT 1 cut(s) 521
Zsp2I ATGCAT 1 cut(s) 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.