Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007707

Physical Location & Seq

Genomic Coordinates Forward (+)

3938334 .. 3939825

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG049400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGATGGTAACAGTCCTTGCAACTCCCAATCCCTTGGCTACTACAAGATATAAAGTGCGTGGTGGTTCTGCTTCTCCTGTACGTCGTAGGGATGCAGATCATCGCTACAGTTCTGAGTACGGTCATTCAGGTGGTCCACAACGCAGTCGGGGGTTTGGCAGTGCACGGGATCCTGGTCGATATCGAGACAACTCACCTTATGGTCGAGGAGGAAGGGGTGCTGGCAGACCATTTGGTAGAGGTCTAGATGGGCCACGGGTTGGTCCTGGGCCGTTCAGAGTTGAAGGGAGTAGAAACAATCCAAATGTGCGCCCAAGGGAAGGAGACTGGTTTTGCCCTGATCCTTTATGTGGCAACTTGAACTTTGCAAGGCGGGACCACTGTAACAACTGCAACAAGTTCCGTGATGGACCTGGGGGAAGTCCTCGAAGGGGATATCCTGGTGTACCGCCTCCAAATTCTCCTCCTAGACGCTTCCCTGGTCCTCCAATTGATCCTCCCCATGGAAGACCCTTGAATGGCTATAGGTCTCCTCCTCGTGGCTGGGCTAGAGACGGCCCCAGAGAGTTTGGTGCTGGGCTGCCACCTCCAAGGCATGAAGGCAGGTTTCCTGACCACCAAATGCGAAGAGATTGGTTGGATTACTCAGACAACTATAGAGGAAGATCCAAGTTTGATAGGCCAATGCCTATGGATAGGGGTAATAGAGATCGAGGGAGGGATAGTTTCTTTGAAAGGAAAGCATTTGAAAGGCGACCACCGTCTCCCCCTTCACCACCACCACCACTTCCTCCTTACCGTGGCCGATGGGCACATGATGCTAGGCAGAGAAGCCGTTCGCCGTTAAGGGGTGGTCTGCCACCAAAGGACTATAACCGGCCTATGTACATGGATCGGGGACGAGATGATCGCCGTGGCATGGGGCGAGACCGAATTGGAGGTGCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1901796 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

316

Amino Acids

35.72

Weight (kDa)

11.3

Isoelectric Point (pI)

61.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28990 AT4G28990
fragaria_vesca	FvH4_1g04330
malus_domestica	MD02G1042900.v1.1 MD15G1181500.v1.1 MD15G1181700.v1.1
prunus_persica	Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1
pyrus_communis	pycom02g03570 pycom15g16390
rosa_chinensis	RchiOBHm_Chr2g0088791 RchiOBHm_Chr2g0088801 RchiOBHm_Chr2g0089981
rosa_laevigata	RLG00000016065
rosa_multiflora	Rmu_sc0000226.1_g000022
rosa_roxburghii	Rroxscaffold_2G00151490
rosa_rugosa	Rorug02G0004100
rosa_samantha	Rh2AG049300 Rh2AG049400 Rh2BG048200 Rh2CG050400 Rh2DG049500
rosa_wichuraiana	Rw2G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	594
AccB7I	CCANNNNNTGG	1 cut(s)	260
AciI	CCGC	2 cut(s)	373, 449
AclWI	GGATC	6 cut(s)	164, 177, 335, 488, 660, 900
AcoI	YGGCCR	1 cut(s)	802
AcsI	RAATTY	1 cut(s)	457
AfaI	GTAC	4 cut(s)	81, 119, 447, 887
AgsI	TTSAA	5 cut(s)	284, 361, 517, 734, 749
AjnI	CCWGG	5 cut(s)	172, 265, 412, 439, 478
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	6 cut(s)	180, 318, 534, 546, 768, 921
Alw44I	GTGCAC	1 cut(s)	162
AlwI	GGATC	6 cut(s)	164, 177, 335, 488, 660, 900
AoxI	GGCC	6 cut(s)	251, 269, 556, 680, 802, 878
ApaLI	GTGCAC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	580
ApoI	RAATTY	1 cut(s)	457
Asp700I	GAANNNNTTC	1 cut(s)	835
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	8 cut(s)	134, 251, 263, 269, 376, 410, 482, 557
AsuHPI	GGTGA	2 cut(s)	186, 765
AvaII	GGWCC	5 cut(s)	134, 263, 376, 410, 482
BaeGI	GKGCMC	2 cut(s)	166, 814
BamHI	GGATCC	1 cut(s)	169
BauI	CACGAG	1 cut(s)	537
BbsI	GAAGAC	1 cut(s)	514
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	567
BccI	CCATC	3 cut(s)	242, 401, 801
BceAI	ACGGC	5 cut(s)	256, 571, 819, 826, 897
BciT130I	CCWGG	5 cut(s)	174, 267, 414, 441, 480
BcoDI	GTCTC	6 cut(s)	180, 318, 534, 546, 768, 921
BfaI	CTAG	4 cut(s)	245, 468, 549, 822
BfmI	CTRYAG	3 cut(s)	106, 523, 655
BfuAI	ACCTGC	1 cut(s)	594
BisI	GCNGC	1 cut(s)	581
BlsI	GCNGC	1 cut(s)	582
Bme1390I	CCNGG	5 cut(s)	174, 267, 414, 441, 480
Bme18I	GGWCC	5 cut(s)	134, 263, 376, 410, 482
BmgT120I	GGNCC	8 cut(s)	134, 251, 263, 269, 376, 410, 482, 557
BmiI	GGNNCC	3 cut(s)	171, 377, 559
BmrFI	CCNGG	5 cut(s)	174, 267, 414, 441, 480
BmsI	GCATC	2 cut(s)	82, 808
BoxI	GACNNNNGTC	1 cut(s)	760
BpiI	GAAGAC	1 cut(s)	514
BsaBI	GATNNNNATC	1 cut(s)	96
BsaI	GGTCTC	2 cut(s)	534, 921
BsaXI	ACNNNNNCTCC	2 cut(s)	709, 739
Bse118I	RCCGGY	1 cut(s)	876
Bse1I	ACTGG	1 cut(s)	332
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	5 cut(s)	174, 267, 414, 441, 480
BseGI	GGATG	1 cut(s)	97
BseJI	GATNNNNATC	1 cut(s)	96
BseMII	CTCAG	2 cut(s)	105, 660
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	4 cut(s)	222, 453, 522, 525
BseSI	GKGCMC	2 cut(s)	166, 814
BseXI	GCAGC	1 cut(s)	567
BseYI	CCCAGC	2 cut(s)	543, 575
BshFI	GGCC	6 cut(s)	253, 271, 558, 682, 804, 880
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	877
BslFI	GGGAC	2 cut(s)	389, 912
BsmAI	GTCTC	6 cut(s)	180, 318, 534, 546, 768, 921
BsmBI	CGTCTC	2 cut(s)	546, 768
BsmFI	GGGAC	2 cut(s)	389, 912
BsnI	GGCC	6 cut(s)	253, 271, 558, 682, 804, 880
Bso31I	GGTCTC	2 cut(s)	534, 921
Bsp1286I	GDGCHC	2 cut(s)	166, 814
Bsp1407I	TGTACA	1 cut(s)	885
Bsp143I	GATC	8 cut(s)	97, 169, 340, 493, 665, 709, 892, 907
Bsp19I	CCATGG	1 cut(s)	502
BspACI	CCGC	2 cut(s)	373, 449
BspANI	GGCC	6 cut(s)	253, 271, 558, 682, 804, 880
BspCNI	CTCAG	2 cut(s)	106, 659
BspLI	GGNNCC	3 cut(s)	171, 377, 559
BspMI	ACCTGC	1 cut(s)	594
BspPI	GGATC	6 cut(s)	164, 177, 335, 488, 660, 900
BspTNI	GGTCTC	2 cut(s)	534, 921
BsrFI	RCCGGY	1 cut(s)	876
BsrGI	TGTACA	1 cut(s)	885
BsrI	ACTGG	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	876
BssMI	GATC	8 cut(s)	97, 169, 340, 493, 665, 709, 892, 907
BssSI	CACGAG	1 cut(s)	537
BssT1I	CCWWGG	4 cut(s)	33, 314, 502, 590
Bst2BI	CACGAG	1 cut(s)	537
Bst2UI	CCWGG	5 cut(s)	174, 267, 414, 441, 480
Bst4CI	ACNGT	6 cut(s)	13, 110, 122, 383, 762, 800
Bst6I	CTCTTC	1 cut(s)	622
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstAUI	TGTACA	1 cut(s)	885
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	114, 646
BstDSI	CCRYGG	4 cut(s)	254, 502, 799, 913
BstF5I	GGATG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	8 cut(s)	100, 172, 343, 496, 668, 712, 895, 910
BstMAI	GTCTC	6 cut(s)	180, 318, 534, 546, 768, 921
BstMBI	GATC	8 cut(s)	97, 169, 340, 493, 665, 709, 892, 907
BstMWI	GCNNNNNNNGC	1 cut(s)	818
BstNI	CCWGG	5 cut(s)	174, 267, 414, 441, 480
BstPAI	GACNNNNGTC	1 cut(s)	760
BstSCI	CCNGG	5 cut(s)	172, 265, 412, 439, 478
BstSFI	CTRYAG	3 cut(s)	106, 523, 655
BstSLI	GKGCMC	2 cut(s)	166, 814
BstV1I	GCAGC	1 cut(s)	567
BstV2I	GAAGAC	1 cut(s)	514
BstX2I	RGATCY	2 cut(s)	169, 665
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	2 cut(s)	169, 665
BsuRI	GGCC	6 cut(s)	253, 271, 558, 682, 804, 880
BtgI	CCRYGG	4 cut(s)	254, 502, 799, 913
BtgZI	GCGATG	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	2 cut(s)	166, 379
BveI	ACCTGC	1 cut(s)	594
Cac8I	GCNNGC	1 cut(s)	223
CfoI	GCGC	1 cut(s)	312
Cfr10I	RCCGGY	1 cut(s)	876
Cfr13I	GGNCC	8 cut(s)	134, 251, 263, 269, 376, 410, 482, 557
CseI	GACGC	1 cut(s)	480
Csp6I	GTAC	4 cut(s)	80, 118, 446, 886
CviAII	CATG	5 cut(s)	503, 596, 815, 889, 919
CviQI	GTAC	4 cut(s)	80, 118, 446, 886
DdeI	CTNAG	2 cut(s)	114, 646
DpnI	GATC	8 cut(s)	99, 171, 342, 495, 667, 711, 894, 909
DpnII	GATC	8 cut(s)	97, 169, 340, 493, 665, 709, 892, 907
EaeI	YGGCCR	1 cut(s)	802
Eam1104I	CTCTTC	1 cut(s)	622
EarI	CTCTTC	1 cut(s)	622
Eco130I	CCWWGG	4 cut(s)	33, 314, 502, 590
Eco31I	GGTCTC	2 cut(s)	534, 921
Eco32I	GATATC	2 cut(s)	182, 437
Eco47I	GGWCC	5 cut(s)	134, 263, 376, 410, 482
EcoRII	CCWGG	5 cut(s)	172, 265, 412, 439, 478
EcoRV	GATATC	2 cut(s)	182, 437
EcoT14I	CCWWGG	4 cut(s)	33, 314, 502, 590
ErhI	CCWWGG	4 cut(s)	33, 314, 502, 590
Esp3I	CGTCTC	2 cut(s)	546, 768
FaeI	CATG	5 cut(s)	506, 599, 818, 892, 922
FaqI	GGGAC	2 cut(s)	389, 912
FatI	CATG	5 cut(s)	502, 595, 814, 888, 918
FauI	CCCGC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	581
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	581
FspBI	CTAG	4 cut(s)	245, 468, 549, 822
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	1 cut(s)	581
GsaI	CCCAGC	2 cut(s)	547, 579
HaeIII	GGCC	6 cut(s)	253, 271, 558, 682, 804, 880
HapII	CCGG	1 cut(s)	877
HgaI	GACGC	1 cut(s)	480
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	5 cut(s)	506, 599, 818, 892, 922
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	877
HphI	GGTGA	2 cut(s)	186, 765
Hpy166II	GTNNAC	3 cut(s)	137, 164, 446
Hpy188I	TCNGA	3 cut(s)	115, 278, 649
Hpy188III	TCNNGA	3 cut(s)	185, 245, 611
Hpy8I	GTNNAC	3 cut(s)	137, 164, 446
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	6 cut(s)	207, 278, 314, 423, 593, 780
HpyCH4III	ACNGT	6 cut(s)	13, 110, 122, 383, 762, 800
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	6 cut(s)	20, 95, 164, 368, 393, 944
HpyF10VI	GCNNNNNNNGC	1 cut(s)	818
HpyF3I	CTNAG	2 cut(s)	114, 646
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	5 cut(s)	506, 599, 818, 892, 922
HspAI	GCGC	1 cut(s)	310
Kzo9I	GATC	8 cut(s)	97, 169, 340, 493, 665, 709, 892, 907
Lsp1109I	GCAGC	1 cut(s)	567
LweI	GCATC	2 cut(s)	82, 808
MaeI	CTAG	4 cut(s)	245, 468, 549, 822
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	2 cut(s)	7, 383
MalI	GATC	8 cut(s)	99, 171, 342, 495, 667, 711, 894, 909
MboI	GATC	8 cut(s)	97, 169, 340, 493, 665, 709, 892, 907
MboII	GAAGA	3 cut(s)	519, 639, 675
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	2 cut(s)	169, 665
MhlI	GDGCHC	2 cut(s)	166, 814
MluCI	AATT	3 cut(s)	457, 489, 933
MmeI	TCCRAC	1 cut(s)	618
MroXI	GAANNNNTTC	1 cut(s)	835
MseI	TTAA	2 cut(s)	845, 949
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	1 cut(s)	877
MspR9I	CCNGG	5 cut(s)	174, 267, 414, 441, 480
MunI	CAATTG	1 cut(s)	489
MvaI	CCWGG	5 cut(s)	174, 267, 414, 441, 480
MwoI	GCNNNNNNNGC	1 cut(s)	818
NcoI	CCATGG	1 cut(s)	502
NdeII	GATC	8 cut(s)	97, 169, 340, 493, 665, 709, 892, 907
NlaIII	CATG	5 cut(s)	506, 599, 818, 892, 922
NlaIV	GGNNCC	3 cut(s)	171, 377, 559
PdmI	GAANNNNTTC	1 cut(s)	835
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	582
PshAI	GACNNNNGTC	1 cut(s)	760
Psp6I	CCWGG	5 cut(s)	172, 265, 412, 439, 478
PspFI	CCCAGC	2 cut(s)	543, 575
PspGI	CCWGG	5 cut(s)	172, 265, 412, 439, 478
PspN4I	GGNNCC	3 cut(s)	171, 377, 559
PspPI	GGNCC	8 cut(s)	134, 251, 263, 269, 376, 410, 482, 557
PsuI	RGATCY	2 cut(s)	169, 665
RsaI	GTAC	4 cut(s)	81, 119, 447, 887
RsaNI	GTAC	4 cut(s)	80, 118, 446, 886
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	845, 949
SatI	GCNGC	1 cut(s)	581
Sau3AI	GATC	8 cut(s)	97, 169, 340, 493, 665, 709, 892, 907
Sau96I	GGNCC	8 cut(s)	134, 251, 263, 269, 376, 410, 482, 557
ScrFI	CCNGG	5 cut(s)	174, 267, 414, 441, 480
SduI	GDGCHC	2 cut(s)	166, 814
SetI	ASST	9 cut(s)	85, 133, 199, 244, 415, 530, 589, 608, 943
SfaNI	GCATC	2 cut(s)	82, 808
SfcI	CTRYAG	3 cut(s)	106, 523, 655
SinI	GGWCC	5 cut(s)	134, 263, 376, 410, 482
SmiMI	CAYNNNNRTG	1 cut(s)	129
Sse9I	AATT	3 cut(s)	457, 489, 933
SsiI	CCGC	2 cut(s)	373, 449
SspMI	CTAG	4 cut(s)	245, 468, 549, 822
StyD4I	CCNGG	5 cut(s)	172, 265, 412, 439, 478
StyI	CCWWGG	4 cut(s)	33, 314, 502, 590
TaaI	ACNGT	6 cut(s)	13, 110, 122, 383, 762, 800
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	5 cut(s)	178, 184, 205, 427, 712
TaqII	GACCGA	1 cut(s)	945
TasI	AATT	3 cut(s)	457, 489, 933
TatI	WGTACW	1 cut(s)	885
Tru1I	TTAA	2 cut(s)	845, 949
Tru9I	TTAA	2 cut(s)	845, 949
TscAI	CASTG	2 cut(s)	166, 386
TseI	GCWGC	1 cut(s)	580
TspDTI	ATGAA	1 cut(s)	612
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	2 cut(s)	166, 386
Van91I	CCANNNNNTGG	1 cut(s)	260
VneI	GTGCAC	1 cut(s)	162
VpaK11BI	GGWCC	5 cut(s)	134, 263, 376, 410, 482
XapI	RAATTY	1 cut(s)	457
XbaI	TCTAGA	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	835
XspI	CTAG	4 cut(s)	245, 468, 549, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.