Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007707

Physical Location & Seq

Genomic Coordinates Forward (+)

3565821 .. 3568732

Gene Structure 2912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG049500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGCTCGAGAAACGAGGAGCAAACCCCACCGCACCATCAGCCTCTTCTCAGCAGCCTCGTCGTCCGTCCCTCCACCAGCGACGGCGGCGGCGCCGGTGGCCGCGGCAGCGATTACGAGCCCGGCGAGGTCCGTCACGAGCCTCCTCCACCTCAGTACACTCGTCCGGATCGTTACGCCGGTAACCCTGGGTATAAAGTGCGTGGTGGTTCTGCTTCTCCTGTACGTCGTAGGGATGCAGATCATCGCTACAGTTCTGAGTACGGTCATTCAGGTGGTCCACAACGCAGTCGTGGGTTTGGCAGTGCACGGGATCCTGGTCGATATCGAGACAACTCACCTTATGGTCGAGGAGGAAGGGGTGCTGGCAGACCATTTGGTAGAGGTCTAGATGGGCCACGGGTTGGTCCTGGGCCGTTCAGAGTTGAAGGGAGTAGAAACAATCCAAATGTGCGCCCAAGGGAAGGAGACTGGTTTTGCCCTGATCCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1901796 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

164

Amino Acids

17.77

Weight (kDa)

10.23

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28990 AT4G28990
fragaria_vesca	FvH4_1g04330
malus_domestica	MD02G1042900.v1.1 MD15G1181500.v1.1 MD15G1181700.v1.1
prunus_persica	Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1
pyrus_communis	pycom02g03570 pycom15g16390
rosa_chinensis	RchiOBHm_Chr2g0088791 RchiOBHm_Chr2g0088801 RchiOBHm_Chr2g0089981
rosa_laevigata	RLG00000016065
rosa_multiflora	Rmu_sc0000226.1_g000022
rosa_roxburghii	Rroxscaffold_2G00151490
rosa_rugosa	Rorug02G0004100
rosa_samantha	Rh2AG049300 Rh2AG049400 Rh2BG048200 Rh2CG050400 Rh2DG049500
rosa_wichuraiana	Rw2G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	404
AccII	CGCG	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	5 cut(s)	32, 87, 90, 103, 105
AclWI	GGATC	4 cut(s)	177, 308, 321, 479
AcoI	YGGCCR	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	3 cut(s)	158, 225, 263
AfiI	CCNNNNNNNGG	2 cut(s)	404, 464
AgsI	TTSAA	1 cut(s)	428
AjnI	CCWGG	3 cut(s)	187, 316, 409
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	2 cut(s)	324, 462
Alw44I	GTGCAC	1 cut(s)	306
AlwI	GGATC	4 cut(s)	177, 308, 321, 479
Ama87I	CYCGRG	1 cut(s)	7
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	3 cut(s)	100, 395, 413
ApaLI	GTGCAC	1 cut(s)	306
ApeKI	GCWGC	2 cut(s)	54, 108
AspLEI	GCGC	2 cut(s)	95, 456
AspS9I	GGNCC	5 cut(s)	130, 278, 395, 407, 413
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	330
AvaI	CYCGRG	1 cut(s)	7
AvaII	GGWCC	3 cut(s)	130, 278, 407
BaeGI	GKGCMC	1 cut(s)	310
BamHI	GGATCC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	2 cut(s)	8, 123
BauI	CACGAG	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	66, 120
BccI	CCATC	2 cut(s)	45, 386
BceAI	ACGGC	2 cut(s)	100, 400
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	3 cut(s)	189, 318, 411
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	324, 462
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	250
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	6 cut(s)	55, 88, 91, 103, 106, 109
BlsI	GCNGC	6 cut(s)	56, 89, 92, 104, 107, 110
Bme1390I	CCNGG	4 cut(s)	123, 189, 318, 411
Bme18I	GGWCC	3 cut(s)	130, 278, 407
BmeT110I	CYCGRG	1 cut(s)	7
BmgT120I	GGNCC	5 cut(s)	130, 278, 395, 407, 413
BmiI	GGNNCC	2 cut(s)	94, 315
BmrFI	CCNGG	4 cut(s)	123, 189, 318, 411
BmsI	GCATC	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	6 cut(s)	103, 187, 188, 398, 410, 458
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 464
Bse118I	RCCGGY	2 cut(s)	95, 179
Bse1I	ACTGG	1 cut(s)	476
Bse8I	GATNNNNATC	1 cut(s)	240
BseAI	TCCGGA	1 cut(s)	166
BseBI	CCWGG	3 cut(s)	189, 318, 411
BseDI	CCNNGG	6 cut(s)	103, 187, 188, 398, 410, 458
BseGI	GGATG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	404, 464
BseMII	CTCAG	3 cut(s)	64, 167, 249
BseNI	ACTGG	1 cut(s)	476
BseRI	GAGGAG	3 cut(s)	32, 135, 366
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	66, 120
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	102, 397, 415
BshNI	GGYRCC	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	7
BsiSI	CCGG	4 cut(s)	96, 123, 167, 180
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	404, 464
BsmAI	GTCTC	2 cut(s)	324, 462
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	3 cut(s)	102, 397, 415
BsoBI	CYCGRG	1 cut(s)	7
Bsp1286I	GDGCHC	3 cut(s)	8, 123, 310
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	4 cut(s)	169, 241, 313, 484
BspACI	CCGC	5 cut(s)	32, 87, 90, 103, 105
BspANI	GGCC	3 cut(s)	102, 397, 415
BspCNI	CTCAG	3 cut(s)	63, 166, 250
BspEI	TCCGGA	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	94, 315
BspPI	GGATC	4 cut(s)	177, 308, 321, 479
BspT107I	GGYRCC	1 cut(s)	92
BsrFI	RCCGGY	2 cut(s)	95, 179
BsrI	ACTGG	1 cut(s)	476
BssAI	RCCGGY	2 cut(s)	95, 179
BssECI	CCNNGG	6 cut(s)	103, 187, 188, 398, 410, 458
BssMI	GATC	4 cut(s)	169, 241, 313, 484
BssNI	GRCGYC	1 cut(s)	93
BssSI	CACGAG	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	458
Bst2BI	CACGAG	1 cut(s)	137
Bst2UI	CCWGG	3 cut(s)	189, 318, 411
Bst4CI	ACNGT	2 cut(s)	254, 266
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	3 cut(s)	50, 153, 258
BstDSI	CCRYGG	2 cut(s)	103, 398
BstEII	GGTNACC	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	241
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	95, 456
BstKTI	GATC	4 cut(s)	172, 244, 316, 487
BstMAI	GTCTC	2 cut(s)	324, 462
BstMBI	GATC	4 cut(s)	169, 241, 313, 484
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 87, 99, 108
BstNI	CCWGG	3 cut(s)	189, 318, 411
BstPI	GGTNACC	1 cut(s)	182
BstSCI	CCNGG	4 cut(s)	121, 187, 316, 409
BstSFI	CTRYAG	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	310
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	66, 120
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	102, 397, 415
BtgI	CCRYGG	2 cut(s)	103, 398
BtgZI	GCGATG	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	367
CfoI	GCGC	2 cut(s)	95, 456
Cfr10I	RCCGGY	2 cut(s)	95, 179
Cfr13I	GGNCC	5 cut(s)	130, 278, 395, 407, 413
Cfr42I	CCGCGG	1 cut(s)	106
Csp6I	GTAC	3 cut(s)	157, 224, 262
CviJI	RGCY	8 cut(s)	6, 43, 57, 102, 121, 142, 397, 415
CviKI_1	RGCY	8 cut(s)	6, 43, 57, 102, 121, 142, 397, 415
CviQI	GTAC	3 cut(s)	157, 224, 262
DdeI	CTNAG	3 cut(s)	50, 153, 258
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	4 cut(s)	171, 243, 315, 486
DpnII	GATC	4 cut(s)	169, 241, 313, 484
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	458
Eco24I	GRGCYC	2 cut(s)	8, 123
Eco32I	GATATC	1 cut(s)	326
Eco47I	GGWCC	3 cut(s)	130, 278, 407
Eco88I	CYCGRG	1 cut(s)	7
Eco91I	GGTNACC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	182
EcoRII	CCWGG	3 cut(s)	187, 316, 409
EcoRV	GATATC	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	458
EcoT38I	GRGCYC	2 cut(s)	8, 123
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	458
FaiI	YATR	2 cut(s)	195, 345
FaqI	GGGAC	1 cut(s)	54
Fnu4HI	GCNGC	6 cut(s)	55, 88, 91, 103, 106, 109
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	2 cut(s)	8, 123
Fsp4HI	GCNGC	6 cut(s)	55, 88, 91, 103, 106, 109
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	2 cut(s)	94, 455
GluI	GCNGC	6 cut(s)	55, 88, 91, 103, 106, 109
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	3 cut(s)	102, 397, 415
HapII	CCGG	4 cut(s)	96, 123, 167, 180
HhaI	GCGC	2 cut(s)	95, 456
Hin1I	GRCGYC	1 cut(s)	93
Hin6I	GCGC	2 cut(s)	93, 454
HinP1I	GCGC	2 cut(s)	93, 454
HpaII	CCGG	4 cut(s)	96, 123, 167, 180
HphI	GGTGA	1 cut(s)	330
Hpy166II	GTNNAC	3 cut(s)	159, 281, 308
Hpy188I	TCNGA	2 cut(s)	259, 422
Hpy188III	TCNNGA	5 cut(s)	9, 137, 167, 329, 389
Hpy8I	GTNNAC	3 cut(s)	159, 281, 308
Hpy99I	CGWCG	3 cut(s)	65, 86, 231
HpyAV	CCTTC	3 cut(s)	351, 422, 458
HpyCH4III	ACNGT	2 cut(s)	254, 266
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	239, 308
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 87, 99, 108
HpyF3I	CTNAG	3 cut(s)	50, 153, 258
HpySE526I	ACGT	1 cut(s)	226
Hsp92I	GRCGYC	1 cut(s)	93
HspAI	GCGC	2 cut(s)	93, 454
KasI	GGCGCC	1 cut(s)	92
Kpn2I	TCCGGA	1 cut(s)	166
KspI	CCGCGG	1 cut(s)	106
Kzo9I	GATC	4 cut(s)	169, 241, 313, 484
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	2 cut(s)	66, 120
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	3 cut(s)	134, 173, 182
MalI	GATC	4 cut(s)	171, 243, 315, 486
MboI	GATC	4 cut(s)	169, 241, 313, 484
MboII	GAAGA	1 cut(s)	38
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	3 cut(s)	8, 123, 310
Mly113I	GGCGCC	1 cut(s)	93
MroI	TCCGGA	1 cut(s)	166
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	105
MspI	CCGG	4 cut(s)	96, 123, 167, 180
MspR9I	CCNGG	4 cut(s)	123, 189, 318, 411
MvaI	CCWGG	3 cut(s)	189, 318, 411
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	4 cut(s)	40, 87, 99, 108
NarI	GGCGCC	1 cut(s)	93
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	4 cut(s)	169, 241, 313, 484
NlaIV	GGNNCC	2 cut(s)	94, 315
NmuCI	GTSAC	1 cut(s)	134
PaeR7I	CTCGAG	1 cut(s)	7
PasI	CCCWGGG	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 169
PflMI	CCANNNNNTGG	1 cut(s)	404
PkrI	GCNGC	6 cut(s)	56, 89, 92, 104, 107, 110
PluTI	GGCGCC	1 cut(s)	96
Psp6I	CCWGG	3 cut(s)	187, 316, 409
PspEI	GGTNACC	1 cut(s)	182
PspGI	CCWGG	3 cut(s)	187, 316, 409
PspN4I	GGNNCC	2 cut(s)	94, 315
PspPI	GGNCC	5 cut(s)	130, 278, 395, 407, 413
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	3 cut(s)	158, 225, 263
RsaNI	GTAC	3 cut(s)	157, 224, 262
RseI	CAYNNNNRTG	1 cut(s)	273
SacII	CCGCGG	1 cut(s)	106
SatI	GCNGC	6 cut(s)	55, 88, 91, 103, 106, 109
Sau3AI	GATC	4 cut(s)	169, 241, 313, 484
Sau96I	GGNCC	5 cut(s)	130, 278, 395, 407, 413
ScrFI	CCNGG	4 cut(s)	123, 189, 318, 411
SduI	GDGCHC	3 cut(s)	8, 123, 310
SetI	ASST	6 cut(s)	132, 154, 229, 277, 343, 388
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	250
SfoI	GGCGCC	1 cut(s)	94
Sfr274I	CTCGAG	1 cut(s)	7
Sfr303I	CCGCGG	1 cut(s)	106
SgrAI	CRCCGGYG	1 cut(s)	95
SgrBI	CCGCGG	1 cut(s)	106
SinI	GGWCC	3 cut(s)	130, 278, 407
SlaI	CTCGAG	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
SsiI	CCGC	5 cut(s)	32, 87, 90, 103, 105
SspDI	GGCGCC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	4 cut(s)	121, 187, 316, 409
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	2 cut(s)	254, 266
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	4 cut(s)	8, 322, 328, 349
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	4 cut(s)	90, 93, 105, 108
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	2 cut(s)	54, 108
Tsp45I	GTSAC	1 cut(s)	134
TspGWI	ACGGA	2 cut(s)	56, 122
TspRI	CASTG	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	404
VneI	GTGCAC	1 cut(s)	306
VpaK11BI	GGWCC	3 cut(s)	130, 278, 407
XbaI	TCTAGA	1 cut(s)	388
XhoI	CTCGAG	1 cut(s)	7
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.