Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007707

Physical Location & Seq

Genomic Coordinates Forward (+)

3215822 .. 3216637

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46409

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGGCTCGAGAAACGAGGAGCAAACCCCACCGCACCATCAGCCTCTTCTCAGCAGCCTCGTCGTCCGTCCCTCCACCAGCGACGGCGGCGGCGCCGGTGGCCGCGGCAGCGATTACGAGCCCGGCGAGGTCCGTCACGAGCCTCCTCCACCTCAGTACACTCGTCCGGATCGTTACGCCGGTAACCCTGCTCTGAATGTTGCCTGCAAGAACTTGAATCTTGGGGAAGGCATGTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1901796 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

80

Amino Acids

8.52

Weight (kDa)

5.82

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28990 AT4G28990
fragaria_vesca	FvH4_1g04330
malus_domestica	MD02G1042900.v1.1 MD15G1181500.v1.1 MD15G1181700.v1.1
prunus_persica	Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1
pyrus_communis	pycom02g03570 pycom15g16390
rosa_chinensis	RchiOBHm_Chr2g0088791 RchiOBHm_Chr2g0088801 RchiOBHm_Chr2g0089981
rosa_laevigata	RLG00000016065
rosa_multiflora	Rmu_sc0000226.1_g000022
rosa_roxburghii	Rroxscaffold_2G00151490
rosa_rugosa	Rorug02G0004100
rosa_samantha	Rh2AG049300 Rh2AG049400 Rh2BG048200 Rh2CG050400 Rh2DG049500
rosa_wichuraiana	Rw2G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccII	CGCG	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	5 cut(s)	32, 87, 90, 103, 105
AclWI	GGATC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	158
AgsI	TTSAA	1 cut(s)	217
AlwI	GGATC	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	7
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	54, 108
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	130
AsuC2I	CCSGG	1 cut(s)	123
AvaI	CYCGRG	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	2 cut(s)	8, 123
BauI	CACGAG	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	66, 120
BccI	CCATC	1 cut(s)	45
BceAI	ACGGC	1 cut(s)	100
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcnI	CCSGG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	6 cut(s)	55, 88, 91, 103, 106, 109
BlsI	GCNGC	6 cut(s)	56, 89, 92, 104, 107, 110
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	166
Bse118I	RCCGGY	2 cut(s)	95, 179
BseAI	TCCGGA	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	64, 167
BseRI	GAGGAG	2 cut(s)	32, 135
BseXI	GCAGC	2 cut(s)	66, 120
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	7
BsiSI	CCGG	4 cut(s)	96, 123, 167, 180
BslFI	GGGAC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	7
Bsp1286I	GDGCHC	2 cut(s)	8, 123
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	5 cut(s)	32, 87, 90, 103, 105
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	2 cut(s)	63, 166
BspEI	TCCGGA	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	92
BsrFI	RCCGGY	2 cut(s)	95, 179
BssAI	RCCGGY	2 cut(s)	95, 179
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	1 cut(s)	169
BssNI	GRCGYC	1 cut(s)	93
BssSI	CACGAG	1 cut(s)	137
Bst2BI	CACGAG	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	2 cut(s)	50, 153
BstDSI	CCRYGG	1 cut(s)	103
BstEII	GGTNACC	1 cut(s)	182
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 87, 99, 108
BstNSI	RCATGY	1 cut(s)	235
BstPI	GGTNACC	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	121
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	66, 120
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	205
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	2 cut(s)	95, 179
Cfr13I	GGNCC	1 cut(s)	130
Cfr42I	CCGCGG	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	6 cut(s)	6, 43, 57, 102, 121, 142
CviKI_1	RGCY	6 cut(s)	6, 43, 57, 102, 121, 142
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	50, 153
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco24I	GRGCYC	2 cut(s)	8, 123
Eco47I	GGWCC	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	7
Eco91I	GGTNACC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	182
EcoT38I	GRGCYC	2 cut(s)	8, 123
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
FaeI	CATG	1 cut(s)	235
FaiI	YATR	1 cut(s)	233
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	1 cut(s)	231
Fnu4HI	GCNGC	6 cut(s)	55, 88, 91, 103, 106, 109
FriOI	GRGCYC	2 cut(s)	8, 123
Fsp4HI	GCNGC	6 cut(s)	55, 88, 91, 103, 106, 109
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	6 cut(s)	55, 88, 91, 103, 106, 109
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	4 cut(s)	96, 123, 167, 180
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	235
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	4 cut(s)	96, 123, 167, 180
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	3 cut(s)	9, 137, 167
Hpy8I	GTNNAC	1 cut(s)	159
Hpy99I	CGWCG	2 cut(s)	65, 86
HpyAV	CCTTC	1 cut(s)	221
HpyCH4V	TGCA	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 87, 99, 108
HpyF3I	CTNAG	2 cut(s)	50, 153
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	235
HspAI	GCGC	1 cut(s)	93
KasI	GGCGCC	1 cut(s)	92
Kpn2I	TCCGGA	1 cut(s)	166
KspI	CCGCGG	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	7 cut(s)	91, 109, 136, 180, 193, 201, 217
Lsp1109I	GCAGC	2 cut(s)	66, 120
MaeIII	GTNAC	3 cut(s)	134, 173, 182
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	38
MhlI	GDGCHC	2 cut(s)	8, 123
Mly113I	GGCGCC	1 cut(s)	93
MnlI	CCTC	8 cut(s)	10, 54, 68, 82, 121, 153, 156, 162
MroI	TCCGGA	1 cut(s)	166
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	105
MspI	CCGG	4 cut(s)	96, 123, 167, 180
MspR9I	CCNGG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	4 cut(s)	40, 87, 99, 108
NarI	GGCGCC	1 cut(s)	93
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	134
NspI	RCATGY	1 cut(s)	235
PaeR7I	CTCGAG	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 169
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	6 cut(s)	56, 89, 92, 104, 107, 110
PluTI	GGCGCC	1 cut(s)	96
PspEI	GGTNACC	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	130
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	236
SacII	CCGCGG	1 cut(s)	106
SatI	GCNGC	6 cut(s)	55, 88, 91, 103, 106, 109
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	2 cut(s)	8, 123
SetI	ASST	2 cut(s)	132, 154
SfoI	GGCGCC	1 cut(s)	94
Sfr274I	CTCGAG	1 cut(s)	7
Sfr303I	CCGCGG	1 cut(s)	106
SgrAI	CRCCGGYG	1 cut(s)	95
SgrBI	CCGCGG	1 cut(s)	106
SinI	GGWCC	1 cut(s)	130
SlaI	CTCGAG	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
SsiI	CCGC	5 cut(s)	32, 87, 90, 103, 105
SspDI	GGCGCC	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	121
TaqI	TCGA	1 cut(s)	8
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	4 cut(s)	90, 93, 105, 108
TfiI	GAWTC	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	2 cut(s)	54, 108
Tsp45I	GTSAC	1 cut(s)	134
TspGWI	ACGGA	2 cut(s)	56, 122
VpaK11BI	GGWCC	1 cut(s)	130
XceI	RCATGY	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.