Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007707

Physical Location & Seq

Genomic Coordinates Forward (+)

14408981 .. 14410691

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1181700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCGTGCAGGTTCTGCTTCCCCTGTACACCGTAGGGATGCAGAAAATCGCTACAGCTCTGAGTATAATCAATCAGGGGGTCCCCCACGTGGGCGTGATTTTGGCAGTGCACGGGATTCTGGTAGATATCGAGACCGCTCACCCCATTTTGCGCGAGGAAGAGGTGTTGGCAGGCCATTTGGTAGAGGTTTAGATGGGCCGGGGCTCGTTCCTGGGCCATTCAGAGGTGAAGGGAGTAGAAATAATCCGAATGTGCAGCAGAGAATCGGAGACTGGATTTGCCCAGATCCTTTATGTGGCAACCTGAACTTTGCAAGGCGAGAATACTGTAACAACTGCAACAAGTCACGCCATGGACCTGGGGGAAGTCCTCGAAGGGGTTATTCTGGGCCACCACCTCCAAATGCTCCTCATAGACGCTTCCCTGGTCCTCCAATTGATCCTCCTCCCTTTGGAAGGAGCTTAAATGGTGGCTATAGGTCTCCACCTCGTGGCTGGGCCAGAAATGGCCCTAGAGATTTTGGCCCTGGGCTGCCGCCTCCAAGGCACGAAGGAAGGTTTCCTGACCACCAGTTGCGAAGAGATCGGTTGGACTACTCTGATAACTACAGAGGAAGAAGTAAGTTTGATAGGCCACTGCCTATGGATTGGGGTAACAGAGATCGGGGAAGGGATAGCTTCTTTAATGAAAGGAAACCATTTGACAGGCGACTGCCCTCTCCTTCTCCACCACCACCTCATCTACCTCCTCACCGCGGCCGATGGGCACATGATGCTAGAGAGAGAAGCCGGTCCCCATTAAGAGGTGGCCCACCACCAAAAGACTACAACAGGCCTCTGTACACGGGTCGGGGTCGGGGTCGGGGTCGGGGACGAGAGGATCATCGTGGCATGGGGCGAGACCGAGTTGGAGATGCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1901796 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

308

Amino Acids

34.66

Weight (kDa)

11.4

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28990 AT4G28990
fragaria_vesca	FvH4_1g04330
malus_domestica	MD02G1042900.v1.1 MD15G1181500.v1.1 MD15G1181700.v1.1
prunus_persica	Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1
pyrus_communis	pycom02g03570 pycom15g16390
rosa_chinensis	RchiOBHm_Chr2g0088791 RchiOBHm_Chr2g0088801 RchiOBHm_Chr2g0089981
rosa_laevigata	RLG00000016065
rosa_multiflora	Rmu_sc0000226.1_g000022
rosa_roxburghii	Rroxscaffold_2G00151490
rosa_rugosa	Rorug02G0004100
rosa_samantha	Rh2AG049300 Rh2AG049400 Rh2BG048200 Rh2CG050400 Rh2DG049500
rosa_wichuraiana	Rw2G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	491
AccBSI	CCGCTC	1 cut(s)	138
AccII	CGCG	2 cut(s)	154, 756
AciI	CCGC	4 cut(s)	136, 536, 754, 756
AclWI	GGATC	3 cut(s)	281, 434, 888
AcoI	YGGCCR	1 cut(s)	757
AcvI	CACGTG	1 cut(s)	89
AdeI	CACNNNGTG	1 cut(s)	491
AfaI	GTAC	2 cut(s)	27, 842
AjnI	CCWGG	4 cut(s)	211, 358, 424, 526
AluBI	AGCT	3 cut(s)	57, 462, 678
AluI	AGCT	3 cut(s)	57, 462, 678
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	4 cut(s)	126, 264, 486, 894
Alw44I	GTGCAC	1 cut(s)	108
AlwI	GGATC	3 cut(s)	281, 434, 888
AlwNI	CAGNNNCTG	1 cut(s)	14
ApaLI	GTGCAC	1 cut(s)	108
ApeKI	GCWGC	2 cut(s)	256, 532
AspLEI	GCGC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	3 cut(s)	132, 239, 743
AvaII	GGWCC	4 cut(s)	80, 356, 428, 792
BaeGI	GKGCMC	2 cut(s)	112, 769
BanII	GRGCYC	1 cut(s)	207
BauI	CACGAG	1 cut(s)	489
BbrPI	CACGTG	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	268, 519
BccI	CCATC	2 cut(s)	188, 756
BciT130I	CCWGG	4 cut(s)	213, 360, 426, 528
BcnI	CCSGG	1 cut(s)	201
BcoDI	GTCTC	4 cut(s)	126, 264, 486, 894
BfaI	CTAG	2 cut(s)	513, 777
BfmI	CTRYAG	3 cut(s)	52, 475, 607
BglI	GCCNNNNNGGC	1 cut(s)	544
BisI	GCNGC	4 cut(s)	257, 533, 536, 757
BlsI	GCNGC	4 cut(s)	258, 534, 537, 758
Bme1390I	CCNGG	5 cut(s)	201, 213, 360, 426, 528
Bme18I	GGWCC	4 cut(s)	80, 356, 428, 792
BmiI	GGNNCC	3 cut(s)	81, 82, 794
BmrFI	CCNGG	5 cut(s)	201, 213, 360, 426, 528
BmsI	GCATC	3 cut(s)	28, 763, 904
BpuMI	CCSGG	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	89
BsaI	GGTCTC	3 cut(s)	126, 486, 894
BsaJI	CCNNGG	9 cut(s)	200, 212, 352, 359, 424, 526, 527, 542, 754
Bse118I	RCCGGY	1 cut(s)	789
Bse1I	ACTGG	2 cut(s)	278, 571
BseBI	CCWGG	4 cut(s)	213, 360, 426, 528
BseDI	CCNNGG	9 cut(s)	200, 212, 352, 359, 424, 526, 527, 542, 754
BseGI	GGATG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	278, 571
BseRI	GAGGAG	3 cut(s)	399, 435, 738
BseSI	GKGCMC	2 cut(s)	112, 769
BseX3I	CGGCCG	1 cut(s)	757
BseXI	GCAGC	2 cut(s)	268, 519
BseYI	CCCAGC	1 cut(s)	495
BsgI	GTGCAG	2 cut(s)	27, 275
Bsh1236I	CGCG	2 cut(s)	154, 756
Bsh1285I	CGRYCG	1 cut(s)	760
BsiEI	CGRYCG	1 cut(s)	760
BsiHKAI	GWGCWC	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	200, 790
BslFI	GGGAC	3 cut(s)	66, 778, 885
BsmAI	GTCTC	4 cut(s)	126, 264, 486, 894
BsmFI	GGGAC	3 cut(s)	66, 778, 885
Bso31I	GGTCTC	3 cut(s)	126, 486, 894
Bsp1286I	GDGCHC	3 cut(s)	112, 207, 769
Bsp1407I	TGTACA	2 cut(s)	25, 840
Bsp143I	GATC	5 cut(s)	286, 439, 583, 661, 880
Bsp19I	CCATGG	1 cut(s)	352
BspACI	CCGC	4 cut(s)	136, 536, 754, 756
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	2 cut(s)	154, 756
BspLI	GGNNCC	3 cut(s)	81, 82, 794
BspPI	GGATC	3 cut(s)	281, 434, 888
BspTNI	GGTCTC	3 cut(s)	126, 486, 894
BsrBI	CCGCTC	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	789
BsrGI	TGTACA	2 cut(s)	25, 840
BsrI	ACTGG	2 cut(s)	278, 571
BssAI	RCCGGY	1 cut(s)	789
BssECI	CCNNGG	9 cut(s)	200, 212, 352, 359, 424, 526, 527, 542, 754
BssMI	GATC	5 cut(s)	286, 439, 583, 661, 880
BssSI	CACGAG	1 cut(s)	489
BssT1I	CCWWGG	2 cut(s)	352, 542
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	4 cut(s)	213, 360, 426, 528
Bst4CI	ACNGT	2 cut(s)	32, 329
Bst6I	CTCTTC	2 cut(s)	154, 574
BstAPI	GCANNNNNTGC	2 cut(s)	14, 773
BstAUI	TGTACA	2 cut(s)	25, 840
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	6, 173
BstDEI	CTNAG	1 cut(s)	60
BstDSI	CCRYGG	2 cut(s)	352, 754
BstENI	CCTNNNNNAGG	1 cut(s)	454
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	2 cut(s)	154, 756
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	5 cut(s)	289, 442, 586, 664, 883
BstMAI	GTCTC	4 cut(s)	126, 264, 486, 894
BstMBI	GATC	5 cut(s)	286, 439, 583, 661, 880
BstMCI	CGRYCG	1 cut(s)	760
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 544, 773
BstNI	CCWGG	4 cut(s)	213, 360, 426, 528
BstSCI	CCNGG	5 cut(s)	199, 211, 358, 424, 526
BstSFI	CTRYAG	3 cut(s)	52, 475, 607
BstSLI	GKGCMC	2 cut(s)	112, 769
BstUI	CGCG	2 cut(s)	154, 756
BstV1I	GCAGC	2 cut(s)	268, 519
BstX2I	RGATCY	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	286
BstZI	CGGCCG	1 cut(s)	757
BtgI	CCRYGG	2 cut(s)	352, 754
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	2 cut(s)	112, 635
BtsIMutI	CAGTG	2 cut(s)	112, 635
Cac8I	GCNNGC	2 cut(s)	6, 173
CaiI	CAGNNNCTG	1 cut(s)	14
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	789
Cfr42I	CCGCGG	1 cut(s)	757
CseI	GACGC	1 cut(s)	426
Csp6I	GTAC	2 cut(s)	26, 841
CviAII	CATG	3 cut(s)	353, 770, 892
CviQI	GTAC	2 cut(s)	26, 841
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	5 cut(s)	288, 441, 585, 663, 882
DpnII	GATC	5 cut(s)	286, 439, 583, 661, 880
DraIII	CACNNNGTG	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	757
EagI	CGGCCG	1 cut(s)	757
Eam1104I	CTCTTC	2 cut(s)	154, 574
EarI	CTCTTC	2 cut(s)	154, 574
EclXI	CGGCCG	1 cut(s)	757
Eco130I	CCWWGG	2 cut(s)	352, 542
Eco147I	AGGCCT	1 cut(s)	835
Eco24I	GRGCYC	1 cut(s)	207
Eco31I	GGTCTC	3 cut(s)	126, 486, 894
Eco32I	GATATC	1 cut(s)	128
Eco47I	GGWCC	4 cut(s)	80, 356, 428, 792
Eco52I	CGGCCG	1 cut(s)	757
Eco72I	CACGTG	1 cut(s)	89
EcoNI	CCTNNNNNAGG	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	80
EcoRII	CCWGG	4 cut(s)	211, 358, 424, 526
EcoRV	GATATC	1 cut(s)	128
EcoT14I	CCWWGG	2 cut(s)	352, 542
EcoT22I	ATGCAT	1 cut(s)	919
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	2 cut(s)	352, 542
FaeI	CATG	3 cut(s)	356, 773, 895
FaiI	YATR	9 cut(s)	66, 295, 354, 414, 477, 644, 771, 893, 919
FaqI	GGGAC	3 cut(s)	66, 778, 885
FatI	CATG	3 cut(s)	352, 769, 891
Fnu4HI	GCNGC	4 cut(s)	257, 533, 536, 757
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	4 cut(s)	257, 533, 536, 757
FspBI	CTAG	2 cut(s)	513, 777
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	4 cut(s)	257, 533, 536, 757
GsaI	CCCAGC	1 cut(s)	499
HapII	CCGG	2 cut(s)	200, 790
HgaI	GACGC	1 cut(s)	426
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	3 cut(s)	356, 773, 895
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	2 cut(s)	116, 264
HpaII	CCGG	2 cut(s)	200, 790
HphI	GGTGA	3 cut(s)	132, 239, 743
Hpy166II	GTNNAC	3 cut(s)	28, 110, 843
Hpy188I	TCNGA	5 cut(s)	61, 224, 249, 269, 601
Hpy188III	TCNNGA	2 cut(s)	131, 563
Hpy8I	GTNNAC	3 cut(s)	28, 110, 843
HpyAV	CCTTC	7 cut(s)	224, 369, 450, 545, 549, 663, 732
HpyCH4III	ACNGT	2 cut(s)	32, 329
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	7 cut(s)	8, 41, 110, 256, 314, 339, 917
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 544, 773
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	3 cut(s)	356, 773, 895
HspAI	GCGC	1 cut(s)	152
KflI	GGGWCCC	1 cut(s)	80
KspI	CCGCGG	1 cut(s)	757
Kzo9I	GATC	5 cut(s)	286, 439, 583, 661, 880
LmnI	GCTCC	2 cut(s)	412, 459
Lsp1109I	GCAGC	2 cut(s)	268, 519
LweI	GCATC	3 cut(s)	28, 763, 904
MaeI	CTAG	2 cut(s)	513, 777
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	3 cut(s)	329, 345, 653
MalI	GATC	5 cut(s)	288, 441, 585, 663, 882
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	5 cut(s)	286, 439, 583, 661, 880
MboII	GAAGA	3 cut(s)	171, 591, 627
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	3 cut(s)	112, 207, 769
MluCI	AATT	1 cut(s)	435
MmeI	TCCRAC	2 cut(s)	570, 889
Mph1103I	ATGCAT	1 cut(s)	919
MseI	TTAA	3 cut(s)	464, 684, 800
MspA1I	CMGCKG	1 cut(s)	756
MspI	CCGG	2 cut(s)	200, 790
MspR9I	CCNGG	5 cut(s)	201, 213, 360, 426, 528
MunI	CAATTG	1 cut(s)	435
MvaI	CCWGG	4 cut(s)	213, 360, 426, 528
MvnI	CGCG	2 cut(s)	154, 756
MwoI	GCNNNNNNNGC	3 cut(s)	14, 544, 773
NciI	CCSGG	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	352
NdeII	GATC	5 cut(s)	286, 439, 583, 661, 880
NlaIII	CATG	3 cut(s)	356, 773, 895
NlaIV	GGNNCC	3 cut(s)	81, 82, 794
NmuCI	GTSAC	1 cut(s)	345
NsiI	ATGCAT	1 cut(s)	919
PasI	CCCWGGG	1 cut(s)	527
PceI	AGGCCT	1 cut(s)	835
PfeI	GAWTC	2 cut(s)	116, 264
PflMI	CCANNNNNTGG	1 cut(s)	491
PkrI	GCNGC	4 cut(s)	258, 534, 537, 758
PmaCI	CACGTG	1 cut(s)	89
PmlI	CACGTG	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	80
Psp5II	RGGWCCY	1 cut(s)	80
Psp6I	CCWGG	4 cut(s)	211, 358, 424, 526
PspCI	CACGTG	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	495
PspGI	CCWGG	4 cut(s)	211, 358, 424, 526
PspN4I	GGNNCC	3 cut(s)	81, 82, 794
PspPPI	RGGWCCY	1 cut(s)	80
PstNI	CAGNNNCTG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	2 cut(s)	27, 842
RsaNI	GTAC	2 cut(s)	26, 841
SacII	CCGCGG	1 cut(s)	757
SaqAI	TTAA	3 cut(s)	464, 684, 800
SatI	GCNGC	4 cut(s)	257, 533, 536, 757
Sau3AI	GATC	5 cut(s)	286, 439, 583, 661, 880
ScrFI	CCNGG	5 cut(s)	201, 213, 360, 426, 528
SduI	GDGCHC	3 cut(s)	112, 207, 769
SfaNI	GCATC	3 cut(s)	28, 763, 904
SfcI	CTRYAG	3 cut(s)	52, 475, 607
Sfr303I	CCGCGG	1 cut(s)	757
SgrBI	CCGCGG	1 cut(s)	757
SinI	GGWCC	4 cut(s)	80, 356, 428, 792
Sse9I	AATT	1 cut(s)	435
SseBI	AGGCCT	1 cut(s)	835
SsiI	CCGC	4 cut(s)	136, 536, 754, 756
SspMI	CTAG	2 cut(s)	513, 777
StuI	AGGCCT	1 cut(s)	835
StyD4I	CCNGG	5 cut(s)	199, 211, 358, 424, 526
StyI	CCWWGG	2 cut(s)	352, 542
TaaI	ACNGT	2 cut(s)	32, 329
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	130, 373
TaqII	GACCGA	1 cut(s)	918
TasI	AATT	1 cut(s)	435
TatI	WGTACW	2 cut(s)	25, 840
TauI	GCSGC	2 cut(s)	538, 759
TfiI	GAWTC	2 cut(s)	116, 264
Tru1I	TTAA	3 cut(s)	464, 684, 800
Tru9I	TTAA	3 cut(s)	464, 684, 800
TscAI	CASTG	2 cut(s)	112, 642
TseFI	GTSAC	1 cut(s)	345
TseI	GCWGC	2 cut(s)	256, 532
Tsp45I	GTSAC	1 cut(s)	345
TspDTI	ATGAA	1 cut(s)	702
TspRI	CASTG	2 cut(s)	112, 642
Van91I	CCANNNNNTGG	1 cut(s)	491
VneI	GTGCAC	1 cut(s)	108
VpaK11BI	GGWCC	4 cut(s)	80, 356, 428, 792
XagI	CCTNNNNNAGG	1 cut(s)	454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	492
XspI	CTAG	2 cut(s)	513, 777
Zsp2I	ATGCAT	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.