Zinc finger domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G28990 AT4G28990 |
| fragaria_vesca | FvH4_1g04330 |
| malus_domestica | MD02G1042900.v1.1 MD15G1181500.v1.1 MD15G1181700.v1.1 |
| prunus_persica | Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1 |
| pyrus_communis | pycom02g03570 pycom15g16390 |
| rosa_chinensis | RchiOBHm_Chr2g0088791 RchiOBHm_Chr2g0088801 RchiOBHm_Chr2g0089981 |
| rosa_laevigata | RLG00000016065 |
| rosa_multiflora | Rmu_sc0000226.1_g000022 |
| rosa_roxburghii | Rroxscaffold_2G00151490 |
| rosa_rugosa | Rorug02G0004100 |
| rosa_samantha | Rh2AG049300 Rh2AG049400 Rh2BG048200 Rh2CG050400 Rh2DG049500 |
| rosa_wichuraiana | Rw2G004090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 197, 744 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 689 |
| AccBSI | CCGCTC | 1 cut(s) | 336 |
| AccII | CGCG | 1 cut(s) | 144 |
| AclWI | GGATC | 3 cut(s) | 177, 479, 632 |
| AcoI | YGGCCR | 2 cut(s) | 106, 964 |
| AdeI | CACNNNGTG | 1 cut(s) | 689 |
| AfaI | GTAC | 3 cut(s) | 225, 951, 1049 |
| AjnI | CCWGG | 5 cut(s) | 187, 409, 583, 622, 724 |
| AluBI | AGCT | 1 cut(s) | 255 |
| AluI | AGCT | 1 cut(s) | 255 |
| Alw21I | GWGCWC | 1 cut(s) | 310 |
| Alw26I | GTCTC | 4 cut(s) | 324, 462, 684, 774 |
| Alw44I | GTGCAC | 1 cut(s) | 306 |
| AlwI | GGATC | 3 cut(s) | 177, 479, 632 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 212 |
| Ama87I | CYCGRG | 1 cut(s) | 351 |
| ApaI | GGGCCC | 1 cut(s) | 279 |
| ApaLI | GTGCAC | 1 cut(s) | 306 |
| ApeKI | GCWGC | 2 cut(s) | 54, 114 |
| AspLEI | GCGC | 1 cut(s) | 456 |
| AsuC2I | CCSGG | 3 cut(s) | 129, 399, 1058 |
| AsuHPI | GGTGA | 5 cut(s) | 210, 330, 437, 915, 950 |
| AvaI | CYCGRG | 1 cut(s) | 351 |
| AvaII | GGWCC | 7 cut(s) | 395, 407, 626, 657, 722, 999, 1054 |
| BaeGI | GKGCMC | 3 cut(s) | 279, 310, 976 |
| BanII | GRGCYC | 4 cut(s) | 129, 279, 405, 732 |
| BauI | CACGAG | 1 cut(s) | 687 |
| Bbv12I | GWGCWC | 1 cut(s) | 310 |
| BbvI | GCAGC | 2 cut(s) | 66, 126 |
| BccI | CCATC | 4 cut(s) | 386, 698, 866, 963 |
| BceAI | ACGGC | 2 cut(s) | 93, 534 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 43, 77 |
| BciT130I | CCWGG | 5 cut(s) | 189, 411, 585, 624, 726 |
| BcnI | CCSGG | 3 cut(s) | 129, 399, 1058 |
| BcoDI | GTCTC | 4 cut(s) | 324, 462, 684, 774 |
| BfaI | CTAG | 1 cut(s) | 984 |
| BfmI | CTRYAG | 3 cut(s) | 250, 673, 805 |
| BfuAI | ACCTGC | 2 cut(s) | 197, 744 |
| BisI | GCNGC | 6 cut(s) | 55, 68, 94, 115, 142, 1015 |
| BlsI | GCNGC | 6 cut(s) | 56, 69, 95, 116, 143, 1016 |
| Bme1390I | CCNGG | 8 cut(s) | 129, 189, 399, 411, 585, 624, 726, 1058 |
| Bme18I | GGWCC | 7 cut(s) | 395, 407, 626, 657, 722, 999, 1054 |
| BmeT110I | CYCGRG | 1 cut(s) | 351 |
| BmiI | GGNNCC | 6 cut(s) | 88, 277, 278, 709, 731, 1001 |
| BmrFI | CCNGG | 8 cut(s) | 129, 189, 399, 411, 585, 624, 726, 1058 |
| BmrI | ACTGGG | 1 cut(s) | 567 |
| BmsI | GCATC | 4 cut(s) | 43, 226, 970, 1093 |
| BmuI | ACTGGG | 1 cut(s) | 567 |
| BpuMI | CCSGG | 3 cut(s) | 129, 399, 1058 |
| BsaAI | YACGTR | 1 cut(s) | 287 |
| BsaBI | GATNNNNATC | 1 cut(s) | 240 |
| BsaI | GGTCTC | 3 cut(s) | 324, 684, 774 |
| Bse118I | RCCGGY | 3 cut(s) | 89, 783, 996 |
| Bse1I | ACTGG | 2 cut(s) | 476, 562 |
| Bse8I | GATNNNNATC | 1 cut(s) | 240 |
| BseBI | CCWGG | 5 cut(s) | 189, 411, 585, 624, 726 |
| BseGI | GGATG | 2 cut(s) | 241, 877 |
| BseJI | GATNNNNATC | 1 cut(s) | 240 |
| BseMII | CTCAG | 2 cut(s) | 64, 249 |
| BseNI | ACTGG | 2 cut(s) | 476, 562 |
| BseRI | GAGGAG | 3 cut(s) | 141, 633, 945 |
| BseSI | GKGCMC | 3 cut(s) | 279, 310, 976 |
| BseXI | GCAGC | 2 cut(s) | 66, 126 |
| BseYI | CCCAGC | 1 cut(s) | 693 |
| BsgI | GTGCAG | 1 cut(s) | 225 |
| Bsh1236I | CGCG | 1 cut(s) | 144 |
| Bsh1285I | CGRYCG | 1 cut(s) | 911 |
| BsiEI | CGRYCG | 1 cut(s) | 911 |
| BsiHKAI | GWGCWC | 1 cut(s) | 310 |
| BsiHKCI | CYCGRG | 1 cut(s) | 351 |
| BsiSI | CCGG | 6 cut(s) | 90, 129, 398, 784, 997, 1057 |
| BslFI | GGGAC | 3 cut(s) | 26, 985, 1074 |
| BsmAI | GTCTC | 4 cut(s) | 324, 462, 684, 774 |
| BsmFI | GGGAC | 3 cut(s) | 26, 985, 1074 |
| Bso31I | GGTCTC | 3 cut(s) | 324, 684, 774 |
| BsoBI | CYCGRG | 1 cut(s) | 351 |
| Bsp120I | GGGCCC | 1 cut(s) | 275 |
| Bsp1286I | GDGCHC | 6 cut(s) | 129, 279, 310, 405, 732, 976 |
| Bsp1407I | TGTACA | 2 cut(s) | 223, 1047 |
| Bsp143I | GATC | 5 cut(s) | 169, 241, 484, 637, 859 |
| BspCNI | CTCAG | 2 cut(s) | 63, 250 |
| BspFNI | CGCG | 1 cut(s) | 144 |
| BspLI | GGNNCC | 6 cut(s) | 88, 277, 278, 709, 731, 1001 |
| BspMI | ACCTGC | 2 cut(s) | 197, 744 |
| BspPI | GGATC | 3 cut(s) | 177, 479, 632 |
| BspTNI | GGTCTC | 3 cut(s) | 324, 684, 774 |
| BsrBI | CCGCTC | 1 cut(s) | 336 |
| BsrFI | RCCGGY | 3 cut(s) | 89, 783, 996 |
| BsrGI | TGTACA | 2 cut(s) | 223, 1047 |
| BsrI | ACTGG | 2 cut(s) | 476, 562 |
| BssAI | RCCGGY | 3 cut(s) | 89, 783, 996 |
| BssMI | GATC | 5 cut(s) | 169, 241, 484, 637, 859 |
| BssSI | CACGAG | 1 cut(s) | 687 |
| BssT1I | CCWWGG | 2 cut(s) | 649, 740 |
| Bst2BI | CACGAG | 1 cut(s) | 687 |
| Bst2UI | CCWGG | 5 cut(s) | 189, 411, 585, 624, 726 |
| Bst4CI | ACNGT | 3 cut(s) | 527, 767, 962 |
| Bst6I | CTCTTC | 1 cut(s) | 51 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 212, 980 |
| BstAUI | TGTACA | 2 cut(s) | 223, 1047 |
| BstBAI | YACGTR | 1 cut(s) | 287 |
| BstC8I | GCNNGC | 5 cut(s) | 91, 146, 204, 367, 371 |
| BstDEI | CTNAG | 2 cut(s) | 50, 258 |
| BstDSI | CCRYGG | 3 cut(s) | 109, 550, 961 |
| BstF5I | GGATG | 2 cut(s) | 241, 877 |
| BstFNI | CGCG | 1 cut(s) | 144 |
| BstHHI | GCGC | 1 cut(s) | 456 |
| BstKTI | GATC | 5 cut(s) | 172, 244, 487, 640, 862 |
| BstMAI | GTCTC | 4 cut(s) | 324, 462, 684, 774 |
| BstMBI | GATC | 5 cut(s) | 169, 241, 484, 637, 859 |
| BstMCI | CGRYCG | 1 cut(s) | 911 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 40, 99, 114, 138, 212, 460, 705, 980 |
| BstNI | CCWGG | 5 cut(s) | 189, 411, 585, 624, 726 |
| BstNSI | RCATGY | 1 cut(s) | 950 |
| BstSCI | CCNGG | 8 cut(s) | 127, 187, 397, 409, 583, 622, 724, 1056 |
| BstSFI | CTRYAG | 3 cut(s) | 250, 673, 805 |
| BstSLI | GKGCMC | 3 cut(s) | 279, 310, 976 |
| BstUI | CGCG | 1 cut(s) | 144 |
| BstV1I | GCAGC | 2 cut(s) | 66, 126 |
| BstX2I | RGATCY | 1 cut(s) | 484 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 464 |
| BstYI | RGATCY | 1 cut(s) | 484 |
| BtgI | CCRYGG | 3 cut(s) | 109, 550, 961 |
| BtgZI | GCGATG | 1 cut(s) | 230 |
| BtsCI | GGATG | 2 cut(s) | 241, 877 |
| BtsI | GCAGTG | 1 cut(s) | 310 |
| BtsIMutI | CAGTG | 1 cut(s) | 310 |
| BveI | ACCTGC | 2 cut(s) | 197, 744 |
| Cac8I | GCNNGC | 5 cut(s) | 91, 146, 204, 367, 371 |
| CaiI | CAGNNNCTG | 1 cut(s) | 212 |
| CfoI | GCGC | 1 cut(s) | 456 |
| Cfr10I | RCCGGY | 3 cut(s) | 89, 783, 996 |
| Csp6I | GTAC | 3 cut(s) | 224, 950, 1048 |
| CviAII | CATG | 5 cut(s) | 746, 947, 977, 1051, 1081 |
| CviQI | GTAC | 3 cut(s) | 224, 950, 1048 |
| DdeI | CTNAG | 2 cut(s) | 50, 258 |
| DpnI | GATC | 5 cut(s) | 171, 243, 486, 639, 861 |
| DpnII | GATC | 5 cut(s) | 169, 241, 484, 637, 859 |
| DraIII | CACNNNGTG | 1 cut(s) | 689 |
| EaeI | YGGCCR | 2 cut(s) | 106, 964 |
| Eam1104I | CTCTTC | 1 cut(s) | 51 |
| EarI | CTCTTC | 1 cut(s) | 51 |
| EciI | GGCGGA | 1 cut(s) | 111 |
| Eco130I | CCWWGG | 2 cut(s) | 649, 740 |
| Eco147I | AGGCCT | 1 cut(s) | 1042 |
| Eco24I | GRGCYC | 4 cut(s) | 129, 279, 405, 732 |
| Eco31I | GGTCTC | 3 cut(s) | 324, 684, 774 |
| Eco32I | GATATC | 1 cut(s) | 326 |
| Eco47I | GGWCC | 7 cut(s) | 395, 407, 626, 657, 722, 999, 1054 |
| Eco88I | CYCGRG | 1 cut(s) | 351 |
| EcoO109I | RGGNCCY | 3 cut(s) | 275, 276, 657 |
| EcoRII | CCWGG | 5 cut(s) | 187, 409, 583, 622, 724 |
| EcoRV | GATATC | 1 cut(s) | 326 |
| EcoT14I | CCWWGG | 2 cut(s) | 649, 740 |
| EcoT22I | ATGCAT | 1 cut(s) | 1108 |
| EcoT38I | GRGCYC | 4 cut(s) | 129, 279, 405, 732 |
| ErhI | CCWWGG | 2 cut(s) | 649, 740 |
| FaeI | CATG | 5 cut(s) | 749, 950, 980, 1054, 1084 |
| FaqI | GGGAC | 3 cut(s) | 26, 985, 1074 |
| FatI | CATG | 5 cut(s) | 745, 946, 976, 1050, 1080 |
| FauI | CCCGC | 1 cut(s) | 554 |
| Fnu4HI | GCNGC | 6 cut(s) | 55, 68, 94, 115, 142, 1015 |
| FokI | GGATG | 2 cut(s) | 248, 884 |
| FriOI | GRGCYC | 4 cut(s) | 129, 279, 405, 732 |
| Fsp4HI | GCNGC | 6 cut(s) | 55, 68, 94, 115, 142, 1015 |
| FspBI | CTAG | 1 cut(s) | 984 |
| GlaI | GCGC | 1 cut(s) | 455 |
| GluI | GCNGC | 6 cut(s) | 55, 68, 94, 115, 142, 1015 |
| GsaI | CCCAGC | 1 cut(s) | 697 |
| HapII | CCGG | 6 cut(s) | 90, 129, 398, 784, 997, 1057 |
| HhaI | GCGC | 1 cut(s) | 456 |
| Hin1II | CATG | 5 cut(s) | 749, 950, 980, 1054, 1084 |
| Hin6I | GCGC | 1 cut(s) | 454 |
| HinP1I | GCGC | 1 cut(s) | 454 |
| HinfI | GANTC | 1 cut(s) | 314 |
| HpaII | CCGG | 6 cut(s) | 90, 129, 398, 784, 997, 1057 |
| HphI | GGTGA | 5 cut(s) | 210, 330, 437, 915, 950 |
| Hpy166II | GTNNAC | 2 cut(s) | 226, 308 |
| Hpy188I | TCNGA | 4 cut(s) | 169, 259, 422, 799 |
| Hpy188III | TCNNGA | 2 cut(s) | 329, 761 |
| Hpy8I | GTNNAC | 2 cut(s) | 226, 308 |
| Hpy99I | CGWCG | 3 cut(s) | 65, 86, 1077 |
| HpyAV | CCTTC | 7 cut(s) | 351, 422, 567, 648, 743, 861, 930 |
| HpyCH4III | ACNGT | 3 cut(s) | 527, 767, 962 |
| HpyCH4IV | ACGT | 1 cut(s) | 286 |
| HpyCH4V | TGCA | 7 cut(s) | 206, 239, 308, 512, 537, 775, 1106 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 40, 99, 114, 138, 212, 460, 705, 980 |
| HpyF3I | CTNAG | 2 cut(s) | 50, 258 |
| HpySE526I | ACGT | 1 cut(s) | 286 |
| Hsp92II | CATG | 5 cut(s) | 749, 950, 980, 1054, 1084 |
| HspAI | GCGC | 1 cut(s) | 454 |
| KroI | GCCGGC | 1 cut(s) | 89 |
| KroNI | GCCGGC | 1 cut(s) | 91 |
| Kzo9I | GATC | 5 cut(s) | 169, 241, 484, 637, 859 |
| LmnI | GCTCC | 2 cut(s) | 86, 735 |
| Lsp1109I | GCAGC | 2 cut(s) | 66, 126 |
| LweI | GCATC | 4 cut(s) | 43, 226, 970, 1093 |
| MaeI | CTAG | 1 cut(s) | 984 |
| MaeII | ACGT | 1 cut(s) | 286 |
| MaeIII | GTNAC | 3 cut(s) | 173, 527, 851 |
| MalI | GATC | 5 cut(s) | 171, 243, 486, 639, 861 |
| MbiI | CCGCTC | 1 cut(s) | 336 |
| MboI | GATC | 5 cut(s) | 169, 241, 484, 637, 859 |
| MboII | GAAGA | 2 cut(s) | 38, 825 |
| MfeI | CAATTG | 1 cut(s) | 633 |
| MflI | RGATCY | 1 cut(s) | 484 |
| MhlI | GDGCHC | 6 cut(s) | 129, 279, 310, 405, 732, 976 |
| MluCI | AATT | 1 cut(s) | 633 |
| MmeI | TCCRAC | 1 cut(s) | 1078 |
| Mph1103I | ATGCAT | 1 cut(s) | 1108 |
| MroNI | GCCGGC | 1 cut(s) | 89 |
| MseI | TTAA | 3 cut(s) | 662, 882, 1007 |
| MspI | CCGG | 6 cut(s) | 90, 129, 398, 784, 997, 1057 |
| MspR9I | CCNGG | 8 cut(s) | 129, 189, 399, 411, 585, 624, 726, 1058 |
| MunI | CAATTG | 1 cut(s) | 633 |
| MvaI | CCWGG | 5 cut(s) | 189, 411, 585, 624, 726 |
| MvnI | CGCG | 1 cut(s) | 144 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 40, 99, 114, 138, 212, 460, 705, 980 |
| NaeI | GCCGGC | 1 cut(s) | 91 |
| NciI | CCSGG | 3 cut(s) | 129, 399, 1058 |
| NdeII | GATC | 5 cut(s) | 169, 241, 484, 637, 859 |
| NgoMIV | GCCGGC | 1 cut(s) | 89 |
| NlaIII | CATG | 5 cut(s) | 749, 950, 980, 1054, 1084 |
| NlaIV | GGNNCC | 6 cut(s) | 88, 277, 278, 709, 731, 1001 |
| NsiI | ATGCAT | 1 cut(s) | 1108 |
| NspI | RCATGY | 1 cut(s) | 950 |
| PaeR7I | CTCGAG | 1 cut(s) | 351 |
| PceI | AGGCCT | 1 cut(s) | 1042 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 129, 169, 1069 |
| PdiI | GCCGGC | 1 cut(s) | 91 |
| PfeI | GAWTC | 1 cut(s) | 314 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 689 |
| PkrI | GCNGC | 6 cut(s) | 56, 69, 95, 116, 143, 1016 |
| Ppu21I | YACGTR | 1 cut(s) | 287 |
| PpuMI | RGGWCCY | 1 cut(s) | 657 |
| Psp5II | RGGWCCY | 1 cut(s) | 657 |
| Psp6I | CCWGG | 5 cut(s) | 187, 409, 583, 622, 724 |
| PspFI | CCCAGC | 1 cut(s) | 693 |
| PspGI | CCWGG | 5 cut(s) | 187, 409, 583, 622, 724 |
| PspN4I | GGNNCC | 6 cut(s) | 88, 277, 278, 709, 731, 1001 |
| PspOMI | GGGCCC | 1 cut(s) | 275 |
| PspPPI | RGGWCCY | 1 cut(s) | 657 |
| PspXI | VCTCGAGB | 1 cut(s) | 351 |
| PstNI | CAGNNNCTG | 1 cut(s) | 212 |
| PsuI | RGATCY | 1 cut(s) | 484 |
| RsaI | GTAC | 3 cut(s) | 225, 951, 1049 |
| RsaNI | GTAC | 3 cut(s) | 224, 950, 1048 |
| SaqAI | TTAA | 3 cut(s) | 662, 882, 1007 |
| SatI | GCNGC | 6 cut(s) | 55, 68, 94, 115, 142, 1015 |
| Sau3AI | GATC | 5 cut(s) | 169, 241, 484, 637, 859 |
| ScrFI | CCNGG | 8 cut(s) | 129, 189, 399, 411, 585, 624, 726, 1058 |
| SduI | GDGCHC | 6 cut(s) | 129, 279, 310, 405, 732, 976 |
| SfaNI | GCATC | 4 cut(s) | 43, 226, 970, 1093 |
| SfcI | CTRYAG | 3 cut(s) | 250, 673, 805 |
| Sfr274I | CTCGAG | 1 cut(s) | 351 |
| SinI | GGWCC | 7 cut(s) | 395, 407, 626, 657, 722, 999, 1054 |
| SlaI | CTCGAG | 1 cut(s) | 351 |
| SmlI | CTYRAG | 1 cut(s) | 351 |
| SmoI | CTYRAG | 1 cut(s) | 351 |
| Sse9I | AATT | 1 cut(s) | 633 |
| SseBI | AGGCCT | 1 cut(s) | 1042 |
| SspMI | CTAG | 1 cut(s) | 984 |
| StuI | AGGCCT | 1 cut(s) | 1042 |
| StyD4I | CCNGG | 8 cut(s) | 127, 187, 397, 409, 583, 622, 724, 1056 |
| StyI | CCWWGG | 2 cut(s) | 649, 740 |
| TaaI | ACNGT | 3 cut(s) | 527, 767, 962 |
| TaiI | ACGT | 1 cut(s) | 289 |
| TaqI | TCGA | 5 cut(s) | 328, 352, 571, 825, 1075 |
| TaqII | GACCGA | 1 cut(s) | 395 |
| TasI | AATT | 1 cut(s) | 633 |
| TatI | WGTACW | 2 cut(s) | 223, 1047 |
| TauI | GCSGC | 4 cut(s) | 70, 96, 144, 1017 |
| TfiI | GAWTC | 1 cut(s) | 314 |
| Tru1I | TTAA | 3 cut(s) | 662, 882, 1007 |
| Tru9I | TTAA | 3 cut(s) | 662, 882, 1007 |
| TscAI | CASTG | 1 cut(s) | 310 |
| TseI | GCWGC | 2 cut(s) | 54, 114 |
| TspDTI | ATGAA | 2 cut(s) | 762, 900 |
| TspGWI | ACGGA | 1 cut(s) | 99 |
| TspRI | CASTG | 1 cut(s) | 310 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 689 |
| VneI | GTGCAC | 1 cut(s) | 306 |
| VpaK11BI | GGWCC | 7 cut(s) | 395, 407, 626, 657, 722, 999, 1054 |
| XceI | RCATGY | 1 cut(s) | 950 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 690 |
| XhoI | CTCGAG | 1 cut(s) | 351 |
| XspI | CTAG | 1 cut(s) | 984 |
| Zsp2I | ATGCAT | 1 cut(s) | 1108 |