MD02G1042900.v1.1

Zinc finger domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
3523409 .. 3527827
4419 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1042900.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGGGGTCAAGGGACAAAGACCAAACGACACCGCATCATCAGCCTCTTCTCAGCAGCCTCGTCGTGCGGCCCTCCACCAGCGACGGAGCCGGCGGCGGAGGCGGTGGCCGTGGCAGCGATTACGAGCCCGGCGAAGTTCGCCGCGAGCCTCCTCCCTACACTCGCTCGGATCGTTACCCCGATGACCCTGGATATAGAGTGCGTGCAGGTTCTGCTTCACCTGTACACCGCAGGGATGCAGATCATCGCTACAGCTCTGAGTATAATCAATCAGGGCCCCCCCTACGTGGGCGTGATTTTGGCAGTGCACGGGATTCTGGTAGATATCGAGACCGCTCACCCCATTATGCTCGAGGAAGGGGTGCTGGCAGGCCATTTGGTAGAGGTTTAGATGGACCGGGGCTCGGTCCTGGGCCATTCAGAGGTGAAGGGAGTAGAAATAATCCAAATGTGCGCCAAAGGCTTGGAGACTGGATTTGCCCAGATCCTTTATGTGGCAACCTGAACTTTGCAAGGCGAGAATACTGTAACAACTGCAACAAGCCCCGCCGTGGAACTGGGGGAAGTCCTCGAAGGGGTTATCCTGGGCCACCACCTCCTAATGTTCCTCATAAACGCTTCCCTGGTCCTCCAATTGATCCTCCTCCCCTTGGAAGGACCTTAAATGGTGGCTATAGGTCTCCACCTCGTGGCTGGGGCAGAGATGGCCCCAGAGATTTTGGTCCTGGGCTCCCACCTCCAAGGCATGAAGGCAGGTTTCCTGACCGTCAAATGCAAAGAGACCGGCTGGACTACTCTGACAACTACAGAGGAAGAAGCAAGTTCGATAGGCCAATGCCTATGGATTGGGGTAACAGAGATCGTGGAAGGGATGGCTTCTTTAATGAAAGGAAACCATTTGACAGGCGACCGCCCTCTCCTTCACCACCACCACCACCACCACCGCATGTACCTCCTCACCGTGGCCGATGGGCACATGATGCTAGAGAGAGAAGCCGGTCCCCATTAAGAGGCGGCCCACCACCAAAAGACTACAACAGGCCTATGTACATGGACCGGGGACGAGATAATCGTCGAGGCATGGGGCGAGGCCGAGTTGGAGATGCATATTGA

Protein Analysis

371

Amino Acids

41.45

Weight (kDa)

10.95

Isoelectric Point (pI)

62.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 197, 744
AccB7I CCANNNNNTGG 1 cut(s) 689
AccBSI CCGCTC 1 cut(s) 336
AccII CGCG 1 cut(s) 144
AclWI GGATC 3 cut(s) 177, 479, 632
AcoI YGGCCR 2 cut(s) 106, 964
AdeI CACNNNGTG 1 cut(s) 689
AfaI GTAC 3 cut(s) 225, 951, 1049
AjnI CCWGG 5 cut(s) 187, 409, 583, 622, 724
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 4 cut(s) 324, 462, 684, 774
Alw44I GTGCAC 1 cut(s) 306
AlwI GGATC 3 cut(s) 177, 479, 632
AlwNI CAGNNNCTG 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 351
ApaI GGGCCC 1 cut(s) 279
ApaLI GTGCAC 1 cut(s) 306
ApeKI GCWGC 2 cut(s) 54, 114
AspLEI GCGC 1 cut(s) 456
AsuC2I CCSGG 3 cut(s) 129, 399, 1058
AsuHPI GGTGA 5 cut(s) 210, 330, 437, 915, 950
AvaI CYCGRG 1 cut(s) 351
AvaII GGWCC 7 cut(s) 395, 407, 626, 657, 722, 999, 1054
BaeGI GKGCMC 3 cut(s) 279, 310, 976
BanII GRGCYC 4 cut(s) 129, 279, 405, 732
BauI CACGAG 1 cut(s) 687
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 2 cut(s) 66, 126
BccI CCATC 4 cut(s) 386, 698, 866, 963
BceAI ACGGC 2 cut(s) 93, 534
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 5 cut(s) 189, 411, 585, 624, 726
BcnI CCSGG 3 cut(s) 129, 399, 1058
BcoDI GTCTC 4 cut(s) 324, 462, 684, 774
BfaI CTAG 1 cut(s) 984
BfmI CTRYAG 3 cut(s) 250, 673, 805
BfuAI ACCTGC 2 cut(s) 197, 744
BisI GCNGC 6 cut(s) 55, 68, 94, 115, 142, 1015
BlsI GCNGC 6 cut(s) 56, 69, 95, 116, 143, 1016
Bme1390I CCNGG 8 cut(s) 129, 189, 399, 411, 585, 624, 726, 1058
Bme18I GGWCC 7 cut(s) 395, 407, 626, 657, 722, 999, 1054
BmeT110I CYCGRG 1 cut(s) 351
BmiI GGNNCC 6 cut(s) 88, 277, 278, 709, 731, 1001
BmrFI CCNGG 8 cut(s) 129, 189, 399, 411, 585, 624, 726, 1058
BmrI ACTGGG 1 cut(s) 567
BmsI GCATC 4 cut(s) 43, 226, 970, 1093
BmuI ACTGGG 1 cut(s) 567
BpuMI CCSGG 3 cut(s) 129, 399, 1058
BsaAI YACGTR 1 cut(s) 287
BsaBI GATNNNNATC 1 cut(s) 240
BsaI GGTCTC 3 cut(s) 324, 684, 774
Bse118I RCCGGY 3 cut(s) 89, 783, 996
Bse1I ACTGG 2 cut(s) 476, 562
Bse8I GATNNNNATC 1 cut(s) 240
BseBI CCWGG 5 cut(s) 189, 411, 585, 624, 726
BseGI GGATG 2 cut(s) 241, 877
BseJI GATNNNNATC 1 cut(s) 240
BseMII CTCAG 2 cut(s) 64, 249
BseNI ACTGG 2 cut(s) 476, 562
BseRI GAGGAG 3 cut(s) 141, 633, 945
BseSI GKGCMC 3 cut(s) 279, 310, 976
BseXI GCAGC 2 cut(s) 66, 126
BseYI CCCAGC 1 cut(s) 693
BsgI GTGCAG 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 911
BsiEI CGRYCG 1 cut(s) 911
BsiHKAI GWGCWC 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 351
BsiSI CCGG 6 cut(s) 90, 129, 398, 784, 997, 1057
BslFI GGGAC 3 cut(s) 26, 985, 1074
BsmAI GTCTC 4 cut(s) 324, 462, 684, 774
BsmFI GGGAC 3 cut(s) 26, 985, 1074
Bso31I GGTCTC 3 cut(s) 324, 684, 774
BsoBI CYCGRG 1 cut(s) 351
Bsp120I GGGCCC 1 cut(s) 275
Bsp1286I GDGCHC 6 cut(s) 129, 279, 310, 405, 732, 976
Bsp1407I TGTACA 2 cut(s) 223, 1047
Bsp143I GATC 5 cut(s) 169, 241, 484, 637, 859
BspCNI CTCAG 2 cut(s) 63, 250
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 6 cut(s) 88, 277, 278, 709, 731, 1001
BspMI ACCTGC 2 cut(s) 197, 744
BspPI GGATC 3 cut(s) 177, 479, 632
BspTNI GGTCTC 3 cut(s) 324, 684, 774
BsrBI CCGCTC 1 cut(s) 336
BsrFI RCCGGY 3 cut(s) 89, 783, 996
BsrGI TGTACA 2 cut(s) 223, 1047
BsrI ACTGG 2 cut(s) 476, 562
BssAI RCCGGY 3 cut(s) 89, 783, 996
BssMI GATC 5 cut(s) 169, 241, 484, 637, 859
BssSI CACGAG 1 cut(s) 687
BssT1I CCWWGG 2 cut(s) 649, 740
Bst2BI CACGAG 1 cut(s) 687
Bst2UI CCWGG 5 cut(s) 189, 411, 585, 624, 726
Bst4CI ACNGT 3 cut(s) 527, 767, 962
Bst6I CTCTTC 1 cut(s) 51
BstAPI GCANNNNNTGC 2 cut(s) 212, 980
BstAUI TGTACA 2 cut(s) 223, 1047
BstBAI YACGTR 1 cut(s) 287
BstC8I GCNNGC 5 cut(s) 91, 146, 204, 367, 371
BstDEI CTNAG 2 cut(s) 50, 258
BstDSI CCRYGG 3 cut(s) 109, 550, 961
BstF5I GGATG 2 cut(s) 241, 877
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 5 cut(s) 172, 244, 487, 640, 862
BstMAI GTCTC 4 cut(s) 324, 462, 684, 774
BstMBI GATC 5 cut(s) 169, 241, 484, 637, 859
BstMCI CGRYCG 1 cut(s) 911
BstMWI GCNNNNNNNGC 8 cut(s) 40, 99, 114, 138, 212, 460, 705, 980
BstNI CCWGG 5 cut(s) 189, 411, 585, 624, 726
BstNSI RCATGY 1 cut(s) 950
BstSCI CCNGG 8 cut(s) 127, 187, 397, 409, 583, 622, 724, 1056
BstSFI CTRYAG 3 cut(s) 250, 673, 805
BstSLI GKGCMC 3 cut(s) 279, 310, 976
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 66, 126
BstX2I RGATCY 1 cut(s) 484
BstXI CCANNNNNNTGG 1 cut(s) 464
BstYI RGATCY 1 cut(s) 484
BtgI CCRYGG 3 cut(s) 109, 550, 961
BtgZI GCGATG 1 cut(s) 230
BtsCI GGATG 2 cut(s) 241, 877
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 310
BveI ACCTGC 2 cut(s) 197, 744
Cac8I GCNNGC 5 cut(s) 91, 146, 204, 367, 371
CaiI CAGNNNCTG 1 cut(s) 212
CfoI GCGC 1 cut(s) 456
Cfr10I RCCGGY 3 cut(s) 89, 783, 996
Csp6I GTAC 3 cut(s) 224, 950, 1048
CviAII CATG 5 cut(s) 746, 947, 977, 1051, 1081
CviQI GTAC 3 cut(s) 224, 950, 1048
DdeI CTNAG 2 cut(s) 50, 258
DpnI GATC 5 cut(s) 171, 243, 486, 639, 861
DpnII GATC 5 cut(s) 169, 241, 484, 637, 859
DraIII CACNNNGTG 1 cut(s) 689
EaeI YGGCCR 2 cut(s) 106, 964
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
EciI GGCGGA 1 cut(s) 111
Eco130I CCWWGG 2 cut(s) 649, 740
Eco147I AGGCCT 1 cut(s) 1042
Eco24I GRGCYC 4 cut(s) 129, 279, 405, 732
Eco31I GGTCTC 3 cut(s) 324, 684, 774
Eco32I GATATC 1 cut(s) 326
Eco47I GGWCC 7 cut(s) 395, 407, 626, 657, 722, 999, 1054
Eco88I CYCGRG 1 cut(s) 351
EcoO109I RGGNCCY 3 cut(s) 275, 276, 657
EcoRII CCWGG 5 cut(s) 187, 409, 583, 622, 724
EcoRV GATATC 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 649, 740
EcoT22I ATGCAT 1 cut(s) 1108
EcoT38I GRGCYC 4 cut(s) 129, 279, 405, 732
ErhI CCWWGG 2 cut(s) 649, 740
FaeI CATG 5 cut(s) 749, 950, 980, 1054, 1084
FaqI GGGAC 3 cut(s) 26, 985, 1074
FatI CATG 5 cut(s) 745, 946, 976, 1050, 1080
FauI CCCGC 1 cut(s) 554
Fnu4HI GCNGC 6 cut(s) 55, 68, 94, 115, 142, 1015
FokI GGATG 2 cut(s) 248, 884
FriOI GRGCYC 4 cut(s) 129, 279, 405, 732
Fsp4HI GCNGC 6 cut(s) 55, 68, 94, 115, 142, 1015
FspBI CTAG 1 cut(s) 984
GlaI GCGC 1 cut(s) 455
GluI GCNGC 6 cut(s) 55, 68, 94, 115, 142, 1015
GsaI CCCAGC 1 cut(s) 697
HapII CCGG 6 cut(s) 90, 129, 398, 784, 997, 1057
HhaI GCGC 1 cut(s) 456
Hin1II CATG 5 cut(s) 749, 950, 980, 1054, 1084
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HinfI GANTC 1 cut(s) 314
HpaII CCGG 6 cut(s) 90, 129, 398, 784, 997, 1057
HphI GGTGA 5 cut(s) 210, 330, 437, 915, 950
Hpy166II GTNNAC 2 cut(s) 226, 308
Hpy188I TCNGA 4 cut(s) 169, 259, 422, 799
Hpy188III TCNNGA 2 cut(s) 329, 761
Hpy8I GTNNAC 2 cut(s) 226, 308
Hpy99I CGWCG 3 cut(s) 65, 86, 1077
HpyAV CCTTC 7 cut(s) 351, 422, 567, 648, 743, 861, 930
HpyCH4III ACNGT 3 cut(s) 527, 767, 962
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 7 cut(s) 206, 239, 308, 512, 537, 775, 1106
HpyF10VI GCNNNNNNNGC 8 cut(s) 40, 99, 114, 138, 212, 460, 705, 980
HpyF3I CTNAG 2 cut(s) 50, 258
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 5 cut(s) 749, 950, 980, 1054, 1084
HspAI GCGC 1 cut(s) 454
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Kzo9I GATC 5 cut(s) 169, 241, 484, 637, 859
LmnI GCTCC 2 cut(s) 86, 735
Lsp1109I GCAGC 2 cut(s) 66, 126
LweI GCATC 4 cut(s) 43, 226, 970, 1093
MaeI CTAG 1 cut(s) 984
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 3 cut(s) 173, 527, 851
MalI GATC 5 cut(s) 171, 243, 486, 639, 861
MbiI CCGCTC 1 cut(s) 336
MboI GATC 5 cut(s) 169, 241, 484, 637, 859
MboII GAAGA 2 cut(s) 38, 825
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 6 cut(s) 129, 279, 310, 405, 732, 976
MluCI AATT 1 cut(s) 633
MmeI TCCRAC 1 cut(s) 1078
Mph1103I ATGCAT 1 cut(s) 1108
MroNI GCCGGC 1 cut(s) 89
MseI TTAA 3 cut(s) 662, 882, 1007
MspI CCGG 6 cut(s) 90, 129, 398, 784, 997, 1057
MspR9I CCNGG 8 cut(s) 129, 189, 399, 411, 585, 624, 726, 1058
MunI CAATTG 1 cut(s) 633
MvaI CCWGG 5 cut(s) 189, 411, 585, 624, 726
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 8 cut(s) 40, 99, 114, 138, 212, 460, 705, 980
NaeI GCCGGC 1 cut(s) 91
NciI CCSGG 3 cut(s) 129, 399, 1058
NdeII GATC 5 cut(s) 169, 241, 484, 637, 859
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 5 cut(s) 749, 950, 980, 1054, 1084
NlaIV GGNNCC 6 cut(s) 88, 277, 278, 709, 731, 1001
NsiI ATGCAT 1 cut(s) 1108
NspI RCATGY 1 cut(s) 950
PaeR7I CTCGAG 1 cut(s) 351
PceI AGGCCT 1 cut(s) 1042
PcsI WCGNNNNNNNCGW 3 cut(s) 129, 169, 1069
PdiI GCCGGC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 689
PkrI GCNGC 6 cut(s) 56, 69, 95, 116, 143, 1016
Ppu21I YACGTR 1 cut(s) 287
PpuMI RGGWCCY 1 cut(s) 657
Psp5II RGGWCCY 1 cut(s) 657
Psp6I CCWGG 5 cut(s) 187, 409, 583, 622, 724
PspFI CCCAGC 1 cut(s) 693
PspGI CCWGG 5 cut(s) 187, 409, 583, 622, 724
PspN4I GGNNCC 6 cut(s) 88, 277, 278, 709, 731, 1001
PspOMI GGGCCC 1 cut(s) 275
PspPPI RGGWCCY 1 cut(s) 657
PspXI VCTCGAGB 1 cut(s) 351
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 484
RsaI GTAC 3 cut(s) 225, 951, 1049
RsaNI GTAC 3 cut(s) 224, 950, 1048
SaqAI TTAA 3 cut(s) 662, 882, 1007
SatI GCNGC 6 cut(s) 55, 68, 94, 115, 142, 1015
Sau3AI GATC 5 cut(s) 169, 241, 484, 637, 859
ScrFI CCNGG 8 cut(s) 129, 189, 399, 411, 585, 624, 726, 1058
SduI GDGCHC 6 cut(s) 129, 279, 310, 405, 732, 976
SfaNI GCATC 4 cut(s) 43, 226, 970, 1093
SfcI CTRYAG 3 cut(s) 250, 673, 805
Sfr274I CTCGAG 1 cut(s) 351
SinI GGWCC 7 cut(s) 395, 407, 626, 657, 722, 999, 1054
SlaI CTCGAG 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
Sse9I AATT 1 cut(s) 633
SseBI AGGCCT 1 cut(s) 1042
SspMI CTAG 1 cut(s) 984
StuI AGGCCT 1 cut(s) 1042
StyD4I CCNGG 8 cut(s) 127, 187, 397, 409, 583, 622, 724, 1056
StyI CCWWGG 2 cut(s) 649, 740
TaaI ACNGT 3 cut(s) 527, 767, 962
TaiI ACGT 1 cut(s) 289
TaqI TCGA 5 cut(s) 328, 352, 571, 825, 1075
TaqII GACCGA 1 cut(s) 395
TasI AATT 1 cut(s) 633
TatI WGTACW 2 cut(s) 223, 1047
TauI GCSGC 4 cut(s) 70, 96, 144, 1017
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 3 cut(s) 662, 882, 1007
Tru9I TTAA 3 cut(s) 662, 882, 1007
TscAI CASTG 1 cut(s) 310
TseI GCWGC 2 cut(s) 54, 114
TspDTI ATGAA 2 cut(s) 762, 900
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 1 cut(s) 310
Van91I CCANNNNNTGG 1 cut(s) 689
VneI GTGCAC 1 cut(s) 306
VpaK11BI GGWCC 7 cut(s) 395, 407, 626, 657, 722, 999, 1054
XceI RCATGY 1 cut(s) 950
XcmI CCANNNNNNNNNTGG 1 cut(s) 690
XhoI CTCGAG 1 cut(s) 351
XspI CTAG 1 cut(s) 984
Zsp2I ATGCAT 1 cut(s) 1108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.