FvH4_1g04330

Zinc finger domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
2315772 .. 2319846
4075 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04330.t1

Sequence Viewer

Length: 1104 bp
ATGGTCTCGAGAAACGAGGAGCAAAGTCCACCGCACCATCAGCCTCTTCTCAGCAGTCTCGTCGTGCGTCCTTCCACCAGCGACAGCGGCGGAGGCGGCGGCTCTGGTCGCCGCGGAAGCGATTACGATCACGGCGAGGTCCGCCACGAGCCTCCTCCTCCACATCAGTACACTCGTCCTGATCGTTACGCCGATAACCCTGGATATAAAATACGTGCTGGTTCTGCTTCTCCTGTACGTCGTAGGGATACAGATAACTACAGTCCTGAGTACGGTCATTCAGGTGGTCCACAACGCAGGCGTGGGTTTGGTAGTGCACGGGATCCTGGTCGATATCGAGACAACTCACCTTATGCTCGAGGAGGAAGGGGTGCTGGCAGACCATTTGGTAGAGGTCTAGATGGGCCACGGGTTGGTCCTTGGACATTTAGAGGTGAAGGGAGTAGGAACAATCCAAATGTGCGCCCAAGGGAAGGAGACTGGATTTGCTCTGATCCTTTATGTGGCAACTTGAACTTTGCAAGGCGGGACCAGTGTAACAGCTGCCACAAGTTCCGTGATGGACCTCGGGGAAGTCCTCGGAGGGGATACCCTGGCCCTCCGCCTCCAATTTCTCCACCAAGACGCTTCCCTGGTCCTCCAATTGATCCTCCCCATGGAAGACACTTGAATGGCTATAGGTCTCCTCCTCGTGGCTGGGCTAGAGATGGCCCTAGAGAGTTTGGTGCTGGGCTGCCACCTCCAAGGCACGAAGACAGGTTCCCTGACCACCAAATGCGAAGAGATTGGTTGGATTACTCAGACAACCATAGAGGAAGAACCAAGTTTGACAGGCCAATACCTATGGATAGGGGAAATAGAGATCGCGGGAGGGATAGTTTCTTTGAAAGGAAAGCATTTGAAAGGCGACCACTGTCTCCCCCTTCACCACCACCACCACTTCCTCCTTACCGTGGCCGATGGGCACATGATGCTAGACAGAGAAGCCGTTCACCGTTAAGGGGTGGGCTGCCACCAAAGGACTTTAACCGGCCTATGTACATGGATCGGGGACGAGACGATCGTCGTGGCATGGGGCGAGACCGAATTGGAGGTGCATACTAA

Protein Analysis

368

Amino Acids

41.57

Weight (kDa)

11.05

Isoelectric Point (pI)

67.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 413
AccII CGCG 2 cut(s) 114, 867
AclWI GGATC 5 cut(s) 317, 330, 488, 641, 1053
AcoI YGGCCR 1 cut(s) 955
AfaI GTAC 4 cut(s) 170, 237, 272, 1040
AfiI CCNNNNNNNGG 9 cut(s) 272, 413, 473, 503, 584, 656, 692, 953, 1001
AgsI TTSAA 4 cut(s) 514, 670, 887, 902
AjnI CCWGG 4 cut(s) 199, 325, 592, 631
AluBI AGCT 1 cut(s) 543
AluI AGCT 1 cut(s) 543
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 8 cut(s) 10, 62, 333, 471, 687, 921, 1050, 1074
Alw44I GTGCAC 1 cut(s) 315
AlwI GGATC 5 cut(s) 317, 330, 488, 641, 1053
Ama87I CYCGRG 3 cut(s) 7, 357, 567
AoxI GGCC 6 cut(s) 404, 595, 709, 833, 955, 1031
ApaLI GTGCAC 1 cut(s) 315
ApeKI GCWGC 3 cut(s) 543, 733, 1009
Asp700I GAANNNNTTC 1 cut(s) 988
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 9 cut(s) 139, 287, 404, 416, 529, 563, 596, 635, 710
AsuHPI GGTGA 4 cut(s) 339, 446, 918, 984
AvaI CYCGRG 3 cut(s) 7, 357, 567
AvaII GGWCC 6 cut(s) 139, 287, 416, 529, 563, 635
BaeGI GKGCMC 2 cut(s) 319, 967
BamHI GGATCC 1 cut(s) 322
BauI CACGAG 2 cut(s) 146, 690
BbsI GAAGAC 2 cut(s) 667, 759
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 3 cut(s) 530, 720, 996
BccI CCATC 5 cut(s) 45, 395, 554, 701, 954
BceAI ACGGC 2 cut(s) 148, 972
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 4 cut(s) 201, 327, 594, 633
BciVI GTATCC 2 cut(s) 241, 581
BcoDI GTCTC 8 cut(s) 10, 62, 333, 471, 687, 921, 1050, 1074
BfaI CTAG 4 cut(s) 398, 702, 714, 975
BfmI CTRYAG 2 cut(s) 259, 676
BfuI GTATCC 2 cut(s) 241, 581
BisI GCNGC 7 cut(s) 88, 97, 100, 112, 544, 734, 1010
BlsI GCNGC 7 cut(s) 89, 98, 101, 113, 545, 735, 1011
Bme1390I CCNGG 4 cut(s) 201, 327, 594, 633
Bme18I GGWCC 6 cut(s) 139, 287, 416, 529, 563, 635
BmeT110I CYCGRG 3 cut(s) 7, 357, 567
BmgT120I GGNCC 9 cut(s) 139, 287, 404, 416, 529, 563, 596, 635, 710
BmiI GGNNCC 3 cut(s) 324, 530, 761
BmrFI CCNGG 4 cut(s) 201, 327, 594, 633
BmsI GCATC 1 cut(s) 961
BoxI GACNNNNGTC 2 cut(s) 913, 1062
BpiI GAAGAC 2 cut(s) 667, 759
BsaAI YACGTR 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 126
BsaI GGTCTC 3 cut(s) 10, 687, 1074
BsaXI ACNNNNNCTCC 2 cut(s) 862, 892
Bsc4I CCNNNNNNNGG 9 cut(s) 272, 413, 473, 503, 584, 656, 692, 953, 1001
Bse118I RCCGGY 1 cut(s) 1029
Bse1I ACTGG 2 cut(s) 485, 532
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 4 cut(s) 201, 327, 594, 633
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 9 cut(s) 272, 413, 473, 503, 584, 656, 692, 953, 1001
BseMII CTCAG 3 cut(s) 64, 258, 813
BseNI ACTGG 2 cut(s) 485, 532
BseRI GAGGAG 6 cut(s) 32, 144, 147, 375, 675, 678
BseSI GKGCMC 2 cut(s) 319, 967
BseXI GCAGC 3 cut(s) 530, 720, 996
BseYI CCCAGC 2 cut(s) 696, 728
Bsh1236I CGCG 2 cut(s) 114, 867
Bsh1285I CGRYCG 1 cut(s) 1063
BshFI GGCC 6 cut(s) 406, 597, 711, 835, 957, 1033
BsiEI CGRYCG 1 cut(s) 1063
BsiHKAI GWGCWC 1 cut(s) 319
BsiHKCI CYCGRG 3 cut(s) 7, 357, 567
BsiSI CCGG 1 cut(s) 1030
BslFI GGGAC 2 cut(s) 542, 1065
BslI CCNNNNNNNGG 9 cut(s) 272, 413, 473, 503, 584, 656, 692, 953, 1001
BsmAI GTCTC 8 cut(s) 10, 62, 333, 471, 687, 921, 1050, 1074
BsmBI CGTCTC 1 cut(s) 1050
BsmFI GGGAC 2 cut(s) 542, 1065
BsnI GGCC 6 cut(s) 406, 597, 711, 835, 957, 1033
Bso31I GGTCTC 3 cut(s) 10, 687, 1074
BsoBI CYCGRG 3 cut(s) 7, 357, 567
Bsp1286I GDGCHC 2 cut(s) 319, 967
Bsp1407I TGTACA 1 cut(s) 1038
Bsp143I GATC 8 cut(s) 127, 181, 322, 493, 646, 862, 1045, 1060
Bsp19I CCATGG 1 cut(s) 655
BspANI GGCC 6 cut(s) 406, 597, 711, 835, 957, 1033
BspCNI CTCAG 3 cut(s) 63, 259, 812
BspFNI CGCG 2 cut(s) 114, 867
BspLI GGNNCC 3 cut(s) 324, 530, 761
BspPI GGATC 5 cut(s) 317, 330, 488, 641, 1053
BspTNI GGTCTC 3 cut(s) 10, 687, 1074
BsrFI RCCGGY 1 cut(s) 1029
BsrGI TGTACA 1 cut(s) 1038
BsrI ACTGG 2 cut(s) 485, 532
BssAI RCCGGY 1 cut(s) 1029
BssMI GATC 8 cut(s) 127, 181, 322, 493, 646, 862, 1045, 1060
BssSI CACGAG 2 cut(s) 146, 690
BssT1I CCWWGG 4 cut(s) 419, 467, 655, 743
Bst2BI CACGAG 2 cut(s) 146, 690
Bst2UI CCWGG 4 cut(s) 201, 327, 594, 633
Bst4CI ACNGT 5 cut(s) 263, 275, 915, 953, 996
Bst6I CTCTTC 2 cut(s) 51, 775
BstAPI GCANNNNNTGC 1 cut(s) 971
BstAUI TGTACA 1 cut(s) 1038
BstBAI YACGTR 1 cut(s) 215
BstC8I GCNNGC 2 cut(s) 299, 376
BstDEI CTNAG 3 cut(s) 50, 267, 799
BstDSI CCRYGG 4 cut(s) 112, 407, 655, 952
BstFNI CGCG 2 cut(s) 114, 867
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 8 cut(s) 130, 184, 325, 496, 649, 865, 1048, 1063
BstMAI GTCTC 8 cut(s) 10, 62, 333, 471, 687, 921, 1050, 1074
BstMBI GATC 8 cut(s) 127, 181, 322, 493, 646, 862, 1045, 1060
BstMCI CGRYCG 1 cut(s) 1063
BstMWI GCNNNNNNNGC 9 cut(s) 40, 87, 93, 96, 108, 117, 141, 224, 971
BstNI CCWGG 4 cut(s) 201, 327, 594, 633
BstPAI GACNNNNGTC 2 cut(s) 913, 1062
BstSCI CCNGG 4 cut(s) 199, 325, 592, 631
BstSFI CTRYAG 2 cut(s) 259, 676
BstSLI GKGCMC 2 cut(s) 319, 967
BstUI CGCG 2 cut(s) 114, 867
BstV1I GCAGC 3 cut(s) 530, 720, 996
BstV2I GAAGAC 2 cut(s) 667, 759
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuI GTATCC 2 cut(s) 241, 581
BsuRI GGCC 6 cut(s) 406, 597, 711, 835, 957, 1033
BtgI CCRYGG 4 cut(s) 112, 407, 655, 952
BtsIMutI CAGTG 2 cut(s) 539, 911
Cac8I GCNNGC 2 cut(s) 299, 376
CfoI GCGC 1 cut(s) 465
Cfr10I RCCGGY 1 cut(s) 1029
Cfr13I GGNCC 9 cut(s) 139, 287, 404, 416, 529, 563, 596, 635, 710
Cfr42I CCGCGG 1 cut(s) 115
CseI GACGC 2 cut(s) 56, 633
Csp6I GTAC 4 cut(s) 169, 236, 271, 1039
CviAII CATG 4 cut(s) 656, 968, 1042, 1072
CviQI GTAC 4 cut(s) 169, 236, 271, 1039
DdeI CTNAG 3 cut(s) 50, 267, 799
DpnI GATC 8 cut(s) 129, 183, 324, 495, 648, 864, 1047, 1062
DpnII GATC 8 cut(s) 127, 181, 322, 493, 646, 862, 1045, 1060
EaeI YGGCCR 1 cut(s) 955
Eam1104I CTCTTC 2 cut(s) 51, 775
EarI CTCTTC 2 cut(s) 51, 775
EciI GGCGGA 3 cut(s) 105, 131, 591
Eco130I CCWWGG 4 cut(s) 419, 467, 655, 743
Eco31I GGTCTC 3 cut(s) 10, 687, 1074
Eco32I GATATC 1 cut(s) 335
Eco47I GGWCC 6 cut(s) 139, 287, 416, 529, 563, 635
Eco88I CYCGRG 3 cut(s) 7, 357, 567
EcoRII CCWGG 4 cut(s) 199, 325, 592, 631
EcoRV GATATC 1 cut(s) 335
EcoT14I CCWWGG 4 cut(s) 419, 467, 655, 743
ErhI CCWWGG 4 cut(s) 419, 467, 655, 743
Esp3I CGTCTC 1 cut(s) 1050
FaeI CATG 4 cut(s) 659, 971, 1045, 1075
FaqI GGGAC 2 cut(s) 542, 1065
FatI CATG 4 cut(s) 655, 967, 1041, 1071
FauI CCCGC 2 cut(s) 519, 860
Fnu4HI GCNGC 7 cut(s) 88, 97, 100, 112, 544, 734, 1010
Fsp4HI GCNGC 7 cut(s) 88, 97, 100, 112, 544, 734, 1010
FspBI CTAG 4 cut(s) 398, 702, 714, 975
GlaI GCGC 1 cut(s) 464
GluI GCNGC 7 cut(s) 88, 97, 100, 112, 544, 734, 1010
GsaI CCCAGC 2 cut(s) 700, 732
HaeIII GGCC 6 cut(s) 406, 597, 711, 835, 957, 1033
HapII CCGG 1 cut(s) 1030
HgaI GACGC 2 cut(s) 56, 633
HhaI GCGC 1 cut(s) 465
Hin1II CATG 4 cut(s) 659, 971, 1045, 1075
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HpaII CCGG 1 cut(s) 1030
HphI GGTGA 4 cut(s) 339, 446, 918, 984
Hpy166II GTNNAC 5 cut(s) 29, 171, 290, 317, 992
Hpy188I TCNGA 3 cut(s) 493, 582, 802
Hpy188III TCNNGA 6 cut(s) 7, 9, 179, 266, 338, 398
Hpy8I GTNNAC 5 cut(s) 29, 171, 290, 317, 992
Hpy99I CGWCG 3 cut(s) 65, 243, 1068
HpyAV CCTTC 5 cut(s) 81, 360, 431, 467, 933
HpyCH4III ACNGT 5 cut(s) 263, 275, 915, 953, 996
HpyCH4IV ACGT 2 cut(s) 214, 238
HpyCH4V TGCA 3 cut(s) 317, 521, 1097
HpyF10VI GCNNNNNNNGC 9 cut(s) 40, 87, 93, 96, 108, 117, 141, 224, 971
HpyF3I CTNAG 3 cut(s) 50, 267, 799
HpySE526I ACGT 2 cut(s) 214, 238
Hsp92II CATG 4 cut(s) 659, 971, 1045, 1075
HspAI GCGC 1 cut(s) 463
KspI CCGCGG 1 cut(s) 115
Kzo9I GATC 8 cut(s) 127, 181, 322, 493, 646, 862, 1045, 1060
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 3 cut(s) 530, 720, 996
LweI GCATC 1 cut(s) 961
MaeI CTAG 4 cut(s) 398, 702, 714, 975
MaeII ACGT 2 cut(s) 214, 238
MaeIII GTNAC 2 cut(s) 185, 536
MalI GATC 8 cut(s) 129, 183, 324, 495, 648, 864, 1047, 1062
MboI GATC 8 cut(s) 127, 181, 322, 493, 646, 862, 1045, 1060
MboII GAAGA 5 cut(s) 38, 672, 764, 792, 828
MfeI CAATTG 1 cut(s) 642
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 2 cut(s) 319, 967
MluCI AATT 3 cut(s) 609, 642, 1086
MmeI TCCRAC 1 cut(s) 771
MroXI GAANNNNTTC 1 cut(s) 988
MseI TTAA 2 cut(s) 998, 1026
MslI CAYNNNNRTG 2 cut(s) 282, 669
MspA1I CMGCKG 3 cut(s) 87, 114, 543
MspI CCGG 1 cut(s) 1030
MspR9I CCNGG 4 cut(s) 201, 327, 594, 633
MunI CAATTG 1 cut(s) 642
MvaI CCWGG 4 cut(s) 201, 327, 594, 633
MvnI CGCG 2 cut(s) 114, 867
MwoI GCNNNNNNNGC 9 cut(s) 40, 87, 93, 96, 108, 117, 141, 224, 971
NcoI CCATGG 1 cut(s) 655
NdeII GATC 8 cut(s) 127, 181, 322, 493, 646, 862, 1045, 1060
NlaIII CATG 4 cut(s) 659, 971, 1045, 1075
NlaIV GGNNCC 3 cut(s) 324, 530, 761
PaeR7I CTCGAG 2 cut(s) 7, 357
PcsI WCGNNNNNNNCGW 3 cut(s) 132, 181, 1060
PdmI GAANNNNTTC 1 cut(s) 988
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 7 cut(s) 89, 98, 101, 113, 545, 735, 1011
Ple19I CGATCG 1 cut(s) 1063
Ppu21I YACGTR 1 cut(s) 215
PshAI GACNNNNGTC 2 cut(s) 913, 1062
Psp6I CCWGG 4 cut(s) 199, 325, 592, 631
PspFI CCCAGC 2 cut(s) 696, 728
PspGI CCWGG 4 cut(s) 199, 325, 592, 631
PspN4I GGNNCC 3 cut(s) 324, 530, 761
PspPI GGNCC 9 cut(s) 139, 287, 404, 416, 529, 563, 596, 635, 710
PspXI VCTCGAGB 1 cut(s) 357
PsuI RGATCY 1 cut(s) 322
PvuI CGATCG 1 cut(s) 1063
PvuII CAGCTG 1 cut(s) 543
RsaI GTAC 4 cut(s) 170, 237, 272, 1040
RsaNI GTAC 4 cut(s) 169, 236, 271, 1039
RseI CAYNNNNRTG 2 cut(s) 282, 669
SacII CCGCGG 1 cut(s) 115
SaqAI TTAA 2 cut(s) 998, 1026
SatI GCNGC 7 cut(s) 88, 97, 100, 112, 544, 734, 1010
Sau3AI GATC 8 cut(s) 127, 181, 322, 493, 646, 862, 1045, 1060
Sau96I GGNCC 9 cut(s) 139, 287, 404, 416, 529, 563, 596, 635, 710
ScrFI CCNGG 4 cut(s) 201, 327, 594, 633
SduI GDGCHC 2 cut(s) 319, 967
SfaNI GCATC 1 cut(s) 961
SfcI CTRYAG 2 cut(s) 259, 676
Sfr274I CTCGAG 2 cut(s) 7, 357
Sfr303I CCGCGG 1 cut(s) 115
SgrBI CCGCGG 1 cut(s) 115
SinI GGWCC 6 cut(s) 139, 287, 416, 529, 563, 635
SlaI CTCGAG 2 cut(s) 7, 357
SmiMI CAYNNNNRTG 2 cut(s) 282, 669
SmlI CTYRAG 2 cut(s) 7, 357
SmoI CTYRAG 2 cut(s) 7, 357
Sse9I AATT 3 cut(s) 609, 642, 1086
SspMI CTAG 4 cut(s) 398, 702, 714, 975
StyD4I CCNGG 4 cut(s) 199, 325, 592, 631
StyI CCWWGG 4 cut(s) 419, 467, 655, 743
TaaI ACNGT 5 cut(s) 263, 275, 915, 953, 996
TaiI ACGT 2 cut(s) 217, 241
TaqI TCGA 4 cut(s) 8, 331, 337, 358
TaqII GACCGA 1 cut(s) 1098
TasI AATT 3 cut(s) 609, 642, 1086
TatI WGTACW 2 cut(s) 168, 1038
TauI GCSGC 4 cut(s) 90, 99, 102, 114
Tru1I TTAA 2 cut(s) 998, 1026
Tru9I TTAA 2 cut(s) 998, 1026
TscAI CASTG 2 cut(s) 539, 918
TseI GCWGC 3 cut(s) 543, 733, 1009
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 2 cut(s) 539, 918
Van91I CCANNNNNTGG 1 cut(s) 413
VneI GTGCAC 1 cut(s) 315
VpaK11BI GGWCC 6 cut(s) 139, 287, 416, 529, 563, 635
XbaI TCTAGA 1 cut(s) 397
XhoI CTCGAG 2 cut(s) 7, 357
XmnI GAANNNNTTC 1 cut(s) 988
XspI CTAG 4 cut(s) 398, 702, 714, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.