AT4G29110

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012845
Physical Location & Seq
Forward (+)
14348637 .. 14349720
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29110.1

Sequence Viewer

Length: 603 bp
ATGGAATCTTCGGTACCAAAGAGAGGCTTATACATGGAAATGGAACAAAACGCTCAAGTGGCAGCCAAAAGGCTTTGGAAAGTGGTCCGCATCGTCTTCTGCGTTTTAAAAACCGGTACGGTCAAAAACAAGCTCATGCTTGACTTAAACCTAATGCTTAAGAGAGGCAACAAAGCCATAACCAACCTCCGCCGTCGATCTAGCTCCACCGGCAGCCATGACGTCAGCTCCTCCTCACGCGTCCGTGACTACGACCCTTTTGCCTTTATCTCCAAACGCAAACGCCGCGTCCACGGCGGTTATGACAACGAAGAAGATGCGGTGGAGGCAGCGGTCAAGAAAGTTTTTGAGTTGTTAGGAGAGAATGATAAGAAGACGGTGGCGACAGAATCGGCCAGAGAGTCGCCGCTGATAATGTCCCCGGCAGTGAGACAGCTCAGGGTGACGGATTCGCCGTTCCCGTTAGACGACGGTGGAGATCACGATCATGTGGTGGACAAAGCCGCAGAGGAGTTTATAAAGAAGTTTTATAAGAACCTTAAGCTGCAAAAGAAGATGACTAACGCATTAGAGTCGCCGTACCACGATGGATGGGTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

200

Amino Acids

22.78

Weight (kDa)

9.66

Isoelectric Point (pI)

67.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 165 - 185 1.3e-07 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012845)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29110
fragaria_vesca FvH4_1g05960
malus_domestica MD02G1064200.v1.1 MD15G1195000.v1.1
prunus_persica Prupe.7G221500_v2.0.a1
pyrus_communis pycom02g05030 pycom15g17440
rosa_chinensis RchiOBHm_Chr2g0091581 RchiOBHm_Chr2g0091651
rosa_laevigata RLG00000016240
rosa_multiflora Rmu_sc0000897.1_g000013
rosa_roxburghii Rroxscaffold_2G00149850
rosa_rugosa Rorug02G0019200
rosa_samantha Rh2AG064400 Rh2BG063600 Rh2CG065300 Rh2DG063700
rosa_wichuraiana Rw2G005610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 518, 531
AatII GACGTC 1 cut(s) 225
Acc65I GGTACC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 13
AccII CGCG 2 cut(s) 240, 288
AciI CCGC 8 cut(s) 88, 190, 286, 297, 320, 332, 407, 504
AcoI YGGCCR 1 cut(s) 393
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 3 cut(s) 15, 118, 581
AfiI CCNNNNNNNGG 1 cut(s) 23
AflII CTTAAG 2 cut(s) 158, 539
AflIII ACRYGT 1 cut(s) 238
AgeI ACCGGT 1 cut(s) 113
AloI GAACNNNNNNTCC 2 cut(s) 440, 472
AluBI AGCT 5 cut(s) 133, 204, 228, 436, 544
AluI AGCT 5 cut(s) 133, 204, 228, 436, 544
Alw26I GTCTC 1 cut(s) 424
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 4 cut(s) 62, 213, 329, 544
ArsI GACNNNNNNTTYG 2 cut(s) 273, 305
AsiGI ACCGGT 1 cut(s) 113
Asp718I GGTACC 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 1 cut(s) 454
AvaII GGWCC 1 cut(s) 85
BanI GGYRCC 1 cut(s) 13
BbsI GAAGAC 2 cut(s) 88, 380
BbvI GCAGC 4 cut(s) 74, 225, 341, 531
BccI CCATC 2 cut(s) 581, 585
BceAI ACGGC 4 cut(s) 177, 310, 439, 562
BcgI CGANNNNNNTGC 6 cut(s) 242, 276, 299, 333, 555, 589
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 1 cut(s) 201
BfrI CTTAAG 2 cut(s) 158, 539
BisI GCNGC 7 cut(s) 63, 214, 286, 330, 407, 504, 545
BlsI GCNGC 7 cut(s) 64, 215, 287, 331, 408, 505, 546
Bme1390I CCNGG 1 cut(s) 422
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 2 cut(s) 99, 307
BpiI GAAGAC 2 cut(s) 88, 380
Bpu10I CCTNAGC 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 483
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 292, 420
BsaWI WCCGGW 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse118I RCCGGY 2 cut(s) 113, 209
Bse8I GATNNNNATC 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 292, 420
BseGI GGATG 1 cut(s) 596
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 451
BseRI GAGGAG 3 cut(s) 220, 223, 524
BseXI GCAGC 4 cut(s) 74, 225, 341, 531
Bsh1236I CGCG 2 cut(s) 240, 288
BshFI GGCC 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 13
BshTI ACCGGT 1 cut(s) 113
BsiSI CCGG 3 cut(s) 114, 210, 422
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 424
BsmFI GGGAC 1 cut(s) 403
BsnI GGCC 1 cut(s) 395
Bsp143I GATC 3 cut(s) 197, 478, 484
BspACI CCGC 8 cut(s) 88, 190, 286, 297, 320, 332, 407, 504
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 1 cut(s) 450
BspFNI CGCG 2 cut(s) 240, 288
BspLI GGNNCC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 13
BspTI CTTAAG 2 cut(s) 158, 539
BsrFI RCCGGY 2 cut(s) 113, 209
BssAI RCCGGY 2 cut(s) 113, 209
BssECI CCNNGG 2 cut(s) 292, 420
BssMI GATC 3 cut(s) 197, 478, 484
BssNI GRCGYC 1 cut(s) 222
Bst4CI ACNGT 3 cut(s) 121, 379, 473
BstACI GRCGYC 1 cut(s) 222
BstAFI CTTAAG 2 cut(s) 158, 539
BstDEI CTNAG 1 cut(s) 437
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 1 cut(s) 596
BstFNI CGCG 2 cut(s) 240, 288
BstKTI GATC 3 cut(s) 200, 481, 487
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 3 cut(s) 197, 478, 484
BstMWI GCNNNNNNNGC 5 cut(s) 59, 210, 285, 294, 326
BstSCI CCNGG 1 cut(s) 420
BstUI CGCG 2 cut(s) 240, 288
BstV1I GCAGC 4 cut(s) 74, 225, 341, 531
BstV2I GAAGAC 2 cut(s) 88, 380
BsuRI GGCC 1 cut(s) 395
BtgI CCRYGG 1 cut(s) 292
BtsCI GGATG 1 cut(s) 596
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 432
Cfr10I RCCGGY 2 cut(s) 113, 209
Cfr13I GGNCC 1 cut(s) 85
CseI GACGC 2 cut(s) 229, 277
Csp6I GTAC 3 cut(s) 14, 117, 580
CspAI ACCGGT 1 cut(s) 113
CviAII CATG 4 cut(s) 34, 136, 218, 488
CviQI GTAC 3 cut(s) 14, 117, 580
DdeI CTNAG 1 cut(s) 437
DpnI GATC 3 cut(s) 199, 480, 486
DpnII GATC 3 cut(s) 197, 478, 484
DraI TTTAAA 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 393
EciI GGCGGA 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 85
FaeI CATG 4 cut(s) 37, 139, 221, 491
FaiI YATR 9 cut(s) 31, 35, 137, 179, 219, 303, 489, 518, 531
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 1 cut(s) 403
FatI CATG 4 cut(s) 33, 135, 217, 487
Fnu4HI GCNGC 7 cut(s) 63, 214, 286, 330, 407, 504, 545
Fsp4HI GCNGC 7 cut(s) 63, 214, 286, 330, 407, 504, 545
FspBI CTAG 1 cut(s) 201
GluI GCNGC 7 cut(s) 63, 214, 286, 330, 407, 504, 545
HaeIII GGCC 1 cut(s) 395
HapII CCGG 3 cut(s) 114, 210, 422
HgaI GACGC 2 cut(s) 229, 277
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 4 cut(s) 37, 139, 221, 491
HinfI GANTC 5 cut(s) 5, 389, 401, 449, 572
HpaII CCGG 3 cut(s) 114, 210, 422
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 2 cut(s) 292, 496
Hpy188III TCNNGA 2 cut(s) 337, 482
Hpy8I GTNNAC 2 cut(s) 292, 496
Hpy99I CGWCG 2 cut(s) 198, 473
HpyCH4III ACNGT 3 cut(s) 121, 379, 473
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 1 cut(s) 547
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 210, 285, 294, 326
HpyF3I CTNAG 1 cut(s) 437
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 4 cut(s) 37, 139, 221, 491
KpnI GGTACC 1 cut(s) 17
Kzo9I GATC 3 cut(s) 197, 478, 484
LmnI GCTCC 2 cut(s) 209, 233
LpnPI CCDG 5 cut(s) 127, 223, 409, 424, 435
Lsp1109I GCAGC 4 cut(s) 74, 225, 341, 531
LweI GCATC 2 cut(s) 99, 307
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 245, 442
MalI GATC 3 cut(s) 199, 480, 486
MboI GATC 3 cut(s) 197, 478, 484
MboII GAAGA 5 cut(s) 88, 323, 326, 385, 565
MluI ACGCGT 1 cut(s) 238
MlyI GAGTC 2 cut(s) 410, 581
MnlI CCTC 7 cut(s) 17, 158, 197, 241, 244, 319, 502
MseI TTAA 4 cut(s) 107, 146, 159, 540
MslI CAYNNNNRTG 2 cut(s) 38, 486
MspA1I CMGCKG 2 cut(s) 332, 409
MspCI CTTAAG 2 cut(s) 158, 539
MspI CCGG 3 cut(s) 114, 210, 422
MspR9I CCNGG 1 cut(s) 422
MvnI CGCG 2 cut(s) 240, 288
MwoI GCNNNNNNNGC 5 cut(s) 59, 210, 285, 294, 326
NciI CCSGG 1 cut(s) 422
NdeII GATC 3 cut(s) 197, 478, 484
NlaIII CATG 4 cut(s) 37, 139, 221, 491
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 2 cut(s) 245, 442
PcsI WCGNNNNNNNCGW 3 cut(s) 99, 452, 458
PfeI GAWTC 3 cut(s) 5, 389, 449
PinAI ACCGGT 1 cut(s) 113
PkrI GCNGC 7 cut(s) 64, 215, 287, 331, 408, 505, 546
PleI GAGTC 2 cut(s) 409, 580
PpsI GAGTC 2 cut(s) 409, 580
PsiI TTATAA 2 cut(s) 518, 531
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 85
RsaI GTAC 3 cut(s) 15, 118, 581
RsaNI GTAC 3 cut(s) 14, 117, 580
RseI CAYNNNNRTG 2 cut(s) 38, 486
SaqAI TTAA 4 cut(s) 107, 146, 159, 540
SatI GCNGC 7 cut(s) 63, 214, 286, 330, 407, 504, 545
Sau3AI GATC 3 cut(s) 197, 478, 484
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 2 cut(s) 410, 581
ScrFI CCNGG 1 cut(s) 422
SetI ASST 9 cut(s) 135, 153, 189, 206, 225, 230, 438, 540, 546
SfaNI GCATC 2 cut(s) 99, 307
SinI GGWCC 1 cut(s) 85
SmiMI CAYNNNNRTG 2 cut(s) 38, 486
SmlI CTYRAG 3 cut(s) 54, 158, 539
SmoI CTYRAG 3 cut(s) 54, 158, 539
SsiI CCGC 8 cut(s) 88, 190, 286, 297, 320, 332, 407, 504
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 420
TaaI ACNGT 3 cut(s) 121, 379, 473
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 196
TauI GCSGC 3 cut(s) 288, 409, 506
TfiI GAWTC 3 cut(s) 5, 389, 449
Tru1I TTAA 4 cut(s) 107, 146, 159, 540
Tru9I TTAA 4 cut(s) 107, 146, 159, 540
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 2 cut(s) 245, 442
TseI GCWGC 4 cut(s) 62, 213, 329, 544
Tsp45I GTSAC 2 cut(s) 245, 442
TspGWI ACGGA 2 cut(s) 233, 461
TspRI CASTG 1 cut(s) 432
Vha464I CTTAAG 2 cut(s) 158, 539
VpaK11BI GGWCC 1 cut(s) 85
XspI CTAG 1 cut(s) 201
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.