Prupe.7G221500_v2.0.a1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012845
Physical Location & Seq
Reverse (-)
19798178 .. 19799007
830 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G221500.1

Sequence Viewer

Length: 633 bp
ATGGAAGTGGAACCAAGCCCACCCATGGTGGCCAAAAAATTGTGGAACTTAGTACGCATAGTGTTCTTCATGGTGAGAAAAGGGTTATCAAAGAGCAAGCTACTTGTTGACCTCCATTTAATGCTCAAACGCGGCAAGCTTGCAGGCAAGGCCATGGCCCACAACCTCATGCTCCACCACTCCTCCGGCTTCAGCTGCCGCTCCAACGACGCCGTTTCCTTCATAACACCACGAGAATACGAGTTCAGCTGCAGCAACAGCCCCGCCATTCACAACCCTTTTCATTTCAACAAGCGCAACAAACACCACCACCACTATTTTACCAAGACCACCAGAGCCTACCAATACGACGACGTTACCACAATGACTGCGGTTCAGAAGGTGCTGGAGATGCTAAACAATGAGATGGTGGCGGAGGCGTCGCCGTTAGTGACGTTGCCGGGGTTTGGGAAGAGCCCCATGGTGAGGCAGCTGAGGATAACGGACTCTCCGTTTCCGTTAAAGGAGGAAGGGGATAGCCAGGTGGACAAGGAAGCTGAGGAGTTTATTAACAGGTTTTATAAAGATCTCAAGTTGCAGAAAAGATCGGCTGTTCTTGAATCTCCATCATACCATGCCATGCGTGGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

211

Amino Acids

24.16

Weight (kDa)

9.64

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012845)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29110
fragaria_vesca FvH4_1g05960
malus_domestica MD02G1064200.v1.1 MD15G1195000.v1.1
prunus_persica Prupe.7G221500_v2.0.a1
pyrus_communis pycom02g05030 pycom15g17440
rosa_chinensis RchiOBHm_Chr2g0091581 RchiOBHm_Chr2g0091651
rosa_laevigata RLG00000016240
rosa_multiflora Rmu_sc0000897.1_g000013
rosa_roxburghii Rroxscaffold_2G00149850
rosa_rugosa Rorug02G0019200
rosa_samantha Rh2AG064400 Rh2BG063600 Rh2CG065300 Rh2DG063700
rosa_wichuraiana Rw2G005610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 561
AccBSI CCGCTC 1 cut(s) 201
AccII CGCG 1 cut(s) 132
AciI CCGC 5 cut(s) 132, 199, 264, 371, 413
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 175
AcyI GRCGYC 2 cut(s) 210, 419
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 3 cut(s) 25, 446, 465
AgsI TTSAA 2 cut(s) 289, 599
AjnI CCWGG 1 cut(s) 519
AluBI AGCT 6 cut(s) 100, 139, 195, 249, 472, 536
AluI AGCT 6 cut(s) 100, 139, 195, 249, 472, 536
AoxI GGCC 3 cut(s) 30, 150, 156
ApeKI GCWGC 4 cut(s) 195, 249, 252, 469
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 157
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 2 cut(s) 85, 475
BalI TGGCCA 1 cut(s) 32
BanII GRGCYC 1 cut(s) 458
BauI CACGAG 1 cut(s) 231
BbvCI CCTCAGC 2 cut(s) 473, 537
BbvI GCAGC 4 cut(s) 182, 236, 264, 481
BccI CCATC 2 cut(s) 400, 613
BceAI ACGGC 2 cut(s) 197, 409
BciT130I CCWGG 1 cut(s) 521
BcnI CCSGG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 250
BglII AGATCT 1 cut(s) 565
BisI GCNGC 6 cut(s) 133, 196, 199, 250, 253, 470
BlsI GCNGC 6 cut(s) 134, 197, 200, 251, 254, 471
Bme1390I CCNGG 2 cut(s) 441, 521
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 2 cut(s) 441, 521
BmsI GCATC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 407
Bpu10I CCTNAGC 2 cut(s) 473, 537
BpuEI CTTGAG 1 cut(s) 554
BpuMI CCSGG 1 cut(s) 441
BsaHI GRCGYC 2 cut(s) 210, 419
BsaJI CCNNGG 4 cut(s) 24, 153, 440, 459
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 472, 502
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 446, 465
BseBI CCWGG 1 cut(s) 521
BseDI CCNNGG 4 cut(s) 24, 153, 440, 459
BseLI CCNNNNNNNGG 3 cut(s) 25, 446, 465
BseMII CTCAG 2 cut(s) 464, 528
BseRI GAGGAG 2 cut(s) 172, 554
BseXI GCAGC 4 cut(s) 182, 236, 264, 481
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 3 cut(s) 32, 152, 158
BsiSI CCGG 2 cut(s) 186, 440
BslI CCNNNNNNNGG 3 cut(s) 25, 446, 465
BsnI GGCC 3 cut(s) 32, 152, 158
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 2 cut(s) 565, 584
Bsp19I CCATGG 3 cut(s) 24, 153, 459
BspACI CCGC 5 cut(s) 132, 199, 264, 371, 413
BspANI GGCC 3 cut(s) 32, 152, 158
BspCNI CTCAG 2 cut(s) 465, 529
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 12
BspMAI CTGCAG 1 cut(s) 254
BspQI GCTCTTC 1 cut(s) 446
BsrBI CCGCTC 1 cut(s) 201
BssECI CCNNGG 4 cut(s) 24, 153, 440, 459
BssMI GATC 2 cut(s) 565, 584
BssNI GRCGYC 2 cut(s) 210, 419
BssSI CACGAG 1 cut(s) 231
BssT1I CCWWGG 3 cut(s) 24, 153, 459
Bst2BI CACGAG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 521
Bst6I CTCTTC 1 cut(s) 446
BstACI GRCGYC 2 cut(s) 210, 419
BstC8I GCNNGC 4 cut(s) 98, 137, 141, 145
BstDEI CTNAG 3 cut(s) 49, 473, 537
BstDSI CCRYGG 3 cut(s) 24, 153, 459
BstFNI CGCG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 2 cut(s) 568, 587
BstMBI GATC 2 cut(s) 565, 584
BstMWI GCNNNNNNNGC 4 cut(s) 149, 195, 258, 391
BstNI CCWGG 1 cut(s) 521
BstSCI CCNGG 2 cut(s) 439, 519
BstSFI CTRYAG 1 cut(s) 250
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 4 cut(s) 182, 236, 264, 481
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BsuRI GGCC 3 cut(s) 32, 152, 158
BtgI CCRYGG 3 cut(s) 24, 153, 459
Cac8I GCNNGC 4 cut(s) 98, 137, 141, 145
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 2 cut(s) 218, 408
Csp6I GTAC 1 cut(s) 53
CviAII CATG 7 cut(s) 25, 70, 154, 169, 460, 614, 619
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 3 cut(s) 49, 473, 537
DpnI GATC 2 cut(s) 567, 586
DpnII GATC 2 cut(s) 565, 584
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
EciI GGCGGA 1 cut(s) 428
Eco130I CCWWGG 3 cut(s) 24, 153, 459
Eco24I GRGCYC 1 cut(s) 458
Eco57I CTGAAG 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 519
EcoT14I CCWWGG 3 cut(s) 24, 153, 459
EcoT38I GRGCYC 1 cut(s) 458
ErhI CCWWGG 3 cut(s) 24, 153, 459
FaeI CATG 7 cut(s) 28, 73, 157, 172, 463, 617, 622
FatI CATG 7 cut(s) 24, 69, 153, 168, 459, 613, 618
FauI CCCGC 1 cut(s) 271
Fnu4HI GCNGC 6 cut(s) 133, 196, 199, 250, 253, 470
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 6 cut(s) 133, 196, 199, 250, 253, 470
GlaI GCGC 1 cut(s) 296
GluI GCNGC 6 cut(s) 133, 196, 199, 250, 253, 470
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 3 cut(s) 32, 152, 158
HapII CCGG 2 cut(s) 186, 440
HgaI GACGC 2 cut(s) 218, 408
HhaI GCGC 1 cut(s) 297
Hin1I GRCGYC 2 cut(s) 210, 419
Hin1II CATG 7 cut(s) 28, 73, 157, 172, 463, 617, 622
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 2 cut(s) 485, 599
HpaII CCGG 2 cut(s) 186, 440
HphI GGTGA 2 cut(s) 85, 475
Hpy166II GTNNAC 2 cut(s) 109, 526
Hpy188I TCNGA 1 cut(s) 378
Hpy188III TCNNGA 1 cut(s) 596
Hpy8I GTNNAC 2 cut(s) 109, 526
Hpy99I CGWCG 4 cut(s) 212, 353, 356, 424
HpyAV CCTTC 3 cut(s) 229, 373, 503
HpyCH4IV ACGT 2 cut(s) 354, 434
HpyCH4V TGCA 3 cut(s) 143, 252, 577
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 195, 258, 391
HpyF3I CTNAG 3 cut(s) 49, 473, 537
HpySE526I ACGT 2 cut(s) 354, 434
Hsp92I GRCGYC 2 cut(s) 210, 419
Hsp92II CATG 7 cut(s) 28, 73, 157, 172, 463, 617, 622
HspAI GCGC 1 cut(s) 295
Kzo9I GATC 2 cut(s) 565, 584
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 2 cut(s) 177, 206
LpnPI CCDG 8 cut(s) 129, 199, 346, 371, 453, 506, 533, 538
Lsp1109I GCAGC 4 cut(s) 182, 236, 264, 481
LweI GCATC 1 cut(s) 381
MaeII ACGT 2 cut(s) 354, 434
MaeIII GTNAC 2 cut(s) 355, 430
MalI GATC 2 cut(s) 567, 586
MbiI CCGCTC 1 cut(s) 201
MboI GATC 2 cut(s) 565, 584
MboII GAAGA 2 cut(s) 58, 463
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 1 cut(s) 458
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 1 cut(s) 38
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 1 cut(s) 479
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 8 cut(s) 122, 176, 193, 409, 459, 468, 499, 532
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 3 cut(s) 119, 500, 549
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 3 cut(s) 195, 249, 472
MspI CCGG 2 cut(s) 186, 440
MspR9I CCNGG 2 cut(s) 441, 521
MvaI CCWGG 1 cut(s) 521
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 4 cut(s) 149, 195, 258, 391
NciI CCSGG 1 cut(s) 441
NcoI CCATGG 3 cut(s) 24, 153, 459
NdeII GATC 2 cut(s) 565, 584
NlaIII CATG 7 cut(s) 28, 73, 157, 172, 463, 617, 622
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 430
PciSI GCTCTTC 1 cut(s) 446
PcsI WCGNNNNNNNCGW 1 cut(s) 488
PfeI GAWTC 1 cut(s) 599
PkrI GCNGC 6 cut(s) 134, 197, 200, 251, 254, 471
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
PsiI TTATAA 1 cut(s) 561
Psp6I CCWGG 1 cut(s) 519
PspGI CCWGG 1 cut(s) 519
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 1 cut(s) 157
PstI CTGCAG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 565
PvuII CAGCTG 3 cut(s) 195, 249, 472
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 3 cut(s) 119, 500, 549
SatI GCNGC 6 cut(s) 133, 196, 199, 250, 253, 470
Sau3AI GATC 2 cut(s) 565, 584
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 2 cut(s) 441, 521
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 1 cut(s) 381
SfcI CTRYAG 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 1 cut(s) 38
SsiI CCGC 5 cut(s) 132, 199, 264, 371, 413
StyD4I CCNGG 2 cut(s) 439, 519
StyI CCWWGG 3 cut(s) 24, 153, 459
TaiI ACGT 2 cut(s) 357, 437
TaqI TCGA 1 cut(s) 628
TasI AATT 1 cut(s) 38
TauI GCSGC 2 cut(s) 135, 201
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 3 cut(s) 119, 500, 549
Tru9I TTAA 3 cut(s) 119, 500, 549
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 4 cut(s) 195, 249, 252, 469
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 3 cut(s) 58, 211, 272
TspGWI ACGGA 3 cut(s) 480, 486, 497
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.