Rh2CG065300

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012845
Physical Location & Seq
Forward (+)
5410521 .. 5411183
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG065300.1

Sequence Viewer

Length: 663 bp
ATGGAAGTGGAACCAAGCCCGCCTGTGGTGGCCAAGAAGCTATGGAACCTAGTACGGATAGTGTTCTTCATGTTGCGAAAGGGCTTGACGAAAAGCAAGTTATTAGTCGACCTCCATTTGATGCTCAAGCGCGGCAAGCTAGCCAGCAAAGCCATCGCAAACAACCTCATCATGCTCCACCACTCCTCCAACTCCGCCTTCAGCTGCCGCTCGAACGACGCCGTTTCGTTCGTCACCCCCCGTGAATATGAGTTCAGCTGCAGCAACAGCCCCGCCACCCACAACCCTTTCCTTTTCCACCACAAGCGCAACAAGCACCACCACCACCACCACGGATACTTTGCGAAAAATACTTCTGCCACAGCCGCCGCGTATCAATACGATGATGTGAGCACCGCGGCGGCAGTGCAGAGGGTTCTTGAGATGCTGAACAGTGAGATGGTGGCGGAGGCGTCGCCAATGGTGACGCTGCCAGGGTTCGGGAAGAGCCCGATGGTGAGGCAGCTGAGGATAACGGACTCGCCGTTTCCGATGAAGGAAGAGGGAGATAGCCAGGTAGACAAGGAAGCTGAGGAATTTATTAAGAAGTTCTATAAAGACCTCAAGTTGCAGAAAAGGACATCTGCTCTTGAATCACCATACCGTGCTTTGCGAAGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

220

Amino Acids

25.01

Weight (kDa)

9.69

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 184 - 210 4.5e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012845)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29110
fragaria_vesca FvH4_1g05960
malus_domestica MD02G1064200.v1.1 MD15G1195000.v1.1
prunus_persica Prupe.7G221500_v2.0.a1
pyrus_communis pycom02g05030 pycom15g17440
rosa_chinensis RchiOBHm_Chr2g0091581 RchiOBHm_Chr2g0091651
rosa_laevigata RLG00000016240
rosa_multiflora Rmu_sc0000897.1_g000013
rosa_roxburghii Rroxscaffold_2G00149850
rosa_rugosa Rorug02G0019200
rosa_samantha Rh2AG064400 Rh2BG063600 Rh2CG065300 Rh2DG063700
rosa_wichuraiana Rw2G005610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 210
AccI GTMKAC 2 cut(s) 108, 558
AccII CGCG 3 cut(s) 132, 371, 398
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 1 cut(s) 184
AcyI GRCGYC 2 cut(s) 219, 452
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 25, 479
AgsI TTSAA 1 cut(s) 632
AjnI CCWGG 2 cut(s) 472, 552
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 6 cut(s) 40, 139, 204, 258, 505, 569
AluI AGCT 6 cut(s) 40, 139, 204, 258, 505, 569
Alw21I GWGCWC 1 cut(s) 395
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 5 cut(s) 204, 258, 261, 469, 502
ApoI RAATTY 1 cut(s) 575
AspLEI GCGC 2 cut(s) 132, 309
AsuHPI GGTGA 4 cut(s) 226, 475, 508, 627
AsuNHI GCTAGC 1 cut(s) 139
BalI TGGCCA 1 cut(s) 32
BanII GRGCYC 1 cut(s) 491
Bbv12I GWGCWC 1 cut(s) 395
BbvCI CCTCAGC 2 cut(s) 506, 570
BbvI GCAGC 5 cut(s) 191, 245, 273, 456, 514
BccI CCATC 3 cut(s) 161, 433, 487
BceAI ACGGC 2 cut(s) 206, 508
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 2 cut(s) 474, 554
BciVI GTATCC 1 cut(s) 329
BfaI CTAG 2 cut(s) 50, 140
BfmI CTRYAG 1 cut(s) 259
BfuI GTATCC 1 cut(s) 329
Bme1390I CCNGG 2 cut(s) 474, 554
BmiI GGNNCC 2 cut(s) 12, 47
BmrFI CCNGG 2 cut(s) 474, 554
BmsI GCATC 2 cut(s) 111, 414
BmtI GCTAGC 1 cut(s) 143
Bpu10I CCTNAGC 2 cut(s) 506, 570
BpuEI CTTGAG 3 cut(s) 110, 440, 587
BsaHI GRCGYC 2 cut(s) 219, 452
BsaJI CCNNGG 3 cut(s) 331, 396, 473
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 479
BseBI CCWGG 2 cut(s) 474, 554
BseDI CCNNGG 3 cut(s) 331, 396, 473
BseLI CCNNNNNNNGG 2 cut(s) 25, 479
BseMII CTCAG 2 cut(s) 497, 561
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 5 cut(s) 191, 245, 273, 456, 514
BsgI GTGCAG 1 cut(s) 428
Bsh1236I CGCG 3 cut(s) 132, 371, 398
BshFI GGCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 25, 479
BsnI GGCC 1 cut(s) 32
Bsp1286I GDGCHC 2 cut(s) 395, 491
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 498, 562
BspFNI CGCG 3 cut(s) 132, 371, 398
BspLI GGNNCC 2 cut(s) 12, 47
BspMAI CTGCAG 1 cut(s) 263
BspOI GCTAGC 1 cut(s) 143
BspQI GCTCTTC 1 cut(s) 479
BsrBI CCGCTC 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 331, 396, 473
BssNI GRCGYC 2 cut(s) 219, 452
Bst2UI CCWGG 2 cut(s) 474, 554
Bst4CI ACNGT 2 cut(s) 434, 644
Bst6I CTCTTC 2 cut(s) 479, 534
BstACI GRCGYC 2 cut(s) 219, 452
BstC8I GCNNGC 4 cut(s) 20, 137, 141, 145
BstDEI CTNAG 2 cut(s) 506, 570
BstDSI CCRYGG 2 cut(s) 331, 396
BstFNI CGCG 3 cut(s) 132, 371, 398
BstHHI GCGC 2 cut(s) 132, 309
BstMWI GCNNNNNNNGC 5 cut(s) 136, 149, 267, 313, 365
BstNI CCWGG 2 cut(s) 474, 554
BstSCI CCNGG 2 cut(s) 472, 552
BstSFI CTRYAG 1 cut(s) 259
BstUI CGCG 3 cut(s) 132, 371, 398
BstV1I GCAGC 5 cut(s) 191, 245, 273, 456, 514
BsuI GTATCC 1 cut(s) 329
BsuRI GGCC 1 cut(s) 32
BtgI CCRYGG 2 cut(s) 331, 396
BtgZI GCGATG 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 2 cut(s) 411, 439
Cac8I GCNNGC 4 cut(s) 20, 137, 141, 145
CfoI GCGC 2 cut(s) 132, 309
Cfr42I CCGCGG 1 cut(s) 399
CseI GACGC 3 cut(s) 227, 441, 475
Csp6I GTAC 1 cut(s) 53
CviAII CATG 2 cut(s) 70, 172
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 2 cut(s) 506, 570
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 479, 534
EarI CTCTTC 2 cut(s) 479, 534
EciI GGCGGA 2 cut(s) 184, 461
Eco24I GRGCYC 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 184
EcoRII CCWGG 2 cut(s) 472, 552
EcoT38I GRGCYC 1 cut(s) 491
FaeI CATG 2 cut(s) 73, 175
FaiI YATR 6 cut(s) 43, 71, 173, 249, 594, 640
FatI CATG 2 cut(s) 69, 171
FauI CCCGC 2 cut(s) 27, 280
FblI GTMKAC 2 cut(s) 108, 558
FriOI GRGCYC 1 cut(s) 491
FspBI CTAG 2 cut(s) 50, 140
GlaI GCGC 2 cut(s) 131, 308
HaeIII GGCC 1 cut(s) 32
HgaI GACGC 3 cut(s) 227, 441, 475
HhaI GCGC 2 cut(s) 132, 309
Hin1I GRCGYC 2 cut(s) 219, 452
Hin1II CATG 2 cut(s) 73, 175
Hin6I GCGC 2 cut(s) 130, 307
HinP1I GCGC 2 cut(s) 130, 307
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 2 cut(s) 518, 632
HphI GGTGA 4 cut(s) 226, 475, 508, 627
Hpy166II GTNNAC 2 cut(s) 109, 559
Hpy188I TCNGA 1 cut(s) 531
Hpy188III TCNNGA 3 cut(s) 419, 481, 629
Hpy8I GTNNAC 2 cut(s) 109, 559
Hpy99I CGWCG 2 cut(s) 221, 457
HpyAV CCTTC 2 cut(s) 208, 529
HpyCH4III ACNGT 2 cut(s) 434, 644
HpyCH4V TGCA 3 cut(s) 261, 409, 610
HpyF10VI GCNNNNNNNGC 5 cut(s) 136, 149, 267, 313, 365
HpyF3I CTNAG 2 cut(s) 506, 570
Hsp92I GRCGYC 2 cut(s) 219, 452
Hsp92II CATG 2 cut(s) 73, 175
HspAI GCGC 2 cut(s) 130, 307
KspI CCGCGG 1 cut(s) 399
LguI GCTCTTC 1 cut(s) 479
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 6 cut(s) 36, 157, 459, 486, 539, 566
Lsp1109I GCAGC 5 cut(s) 191, 245, 273, 456, 514
LweI GCATC 2 cut(s) 111, 414
MaeI CTAG 2 cut(s) 50, 140
MaeIII GTNAC 2 cut(s) 232, 463
MbiI CCGCTC 1 cut(s) 210
MboII GAAGA 3 cut(s) 58, 496, 551
MhlI GDGCHC 2 cut(s) 395, 491
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 1 cut(s) 575
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 1 cut(s) 512
MmeI TCCRAC 1 cut(s) 213
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 1 cut(s) 582
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 4 cut(s) 204, 258, 398, 505
MspR9I CCNGG 2 cut(s) 474, 554
MvaI CCWGG 2 cut(s) 474, 554
MvnI CGCG 3 cut(s) 132, 371, 398
MwoI GCNNNNNNNGC 5 cut(s) 136, 149, 267, 313, 365
NheI GCTAGC 1 cut(s) 139
NlaIII CATG 2 cut(s) 73, 175
NlaIV GGNNCC 2 cut(s) 12, 47
NmuCI GTSAC 2 cut(s) 232, 463
PciSI GCTCTTC 1 cut(s) 479
PcsI WCGNNNNNNNCGW 2 cut(s) 521, 527
PfeI GAWTC 1 cut(s) 632
PleI GAGTC 1 cut(s) 512
PpsI GAGTC 1 cut(s) 512
Psp6I CCWGG 2 cut(s) 472, 552
PspGI CCWGG 2 cut(s) 472, 552
PspN4I GGNNCC 2 cut(s) 12, 47
PstI CTGCAG 1 cut(s) 263
PvuII CAGCTG 3 cut(s) 204, 258, 505
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SacII CCGCGG 1 cut(s) 399
SalI GTCGAC 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 479
SaqAI TTAA 1 cut(s) 582
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 2 cut(s) 474, 554
SduI GDGCHC 2 cut(s) 395, 491
SfaNI GCATC 2 cut(s) 111, 414
SfcI CTRYAG 1 cut(s) 259
Sfr303I CCGCGG 1 cut(s) 399
SgrBI CCGCGG 1 cut(s) 399
SmlI CTYRAG 3 cut(s) 125, 419, 602
SmoI CTYRAG 3 cut(s) 125, 419, 602
Sse9I AATT 1 cut(s) 575
SspMI CTAG 2 cut(s) 50, 140
StyD4I CCNGG 2 cut(s) 472, 552
TaaI ACNGT 2 cut(s) 434, 644
TaqI TCGA 3 cut(s) 108, 212, 658
TasI AATT 1 cut(s) 575
TauI GCSGC 6 cut(s) 135, 210, 368, 371, 401, 404
TfiI GAWTC 1 cut(s) 632
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TscAI CASTG 2 cut(s) 411, 439
TseFI GTSAC 2 cut(s) 232, 463
TseI GCWGC 5 cut(s) 204, 258, 261, 469, 502
Tsp45I GTSAC 2 cut(s) 232, 463
TspDTI ATGAA 2 cut(s) 58, 548
TspGWI ACGGA 3 cut(s) 70, 348, 530
TspRI CASTG 2 cut(s) 411, 439
XapI RAATTY 1 cut(s) 575
XmiI GTMKAC 2 cut(s) 108, 558
XspI CTAG 2 cut(s) 50, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.