pycom02g05030

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0012845
Physical Location & Seq
Forward (+)
3310559 .. 3311191
633 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g05030.1

Sequence Viewer

Length: 633 bp
ATGGAAGTAGAACCAAGCCCGCCGGTTGTGGCAAAGAAATTGTGGAACTTAGTACGCATAGCGTTCTTCATGTTGCGCAAAAGCTTATCGAAGAGCAAGCTTATTGTCGACCTCCATTTGATGCTCAAACGTGGCAAGCTAGCAGGCAAGGCAATAGCCAACAACCTCATGCTCCACCACACCTCCGCCTTCAGCTGCCGCTCAAACGAGGCCCTATCCTTCATCACTCCCCGAGAGTACGAGTTCAGCTGCAGCAACAGCCCCGCCGTTCACAACCTTTTTCATTTCAACAAGCGCAACAAACACCACCACCACTATTTTCCCAAAGCAACCAGTGCATACCAATACGACGACGTTAGCACACTGAGTGCGGTTCAGAAGGTGCTTGAGATGTTGAACAATGAGATTGCAGTGGAGGCCTCGCCGCTTGTGACATTACCAGGGTTTGGGAAGAGCCCTATGGTGAGGCAGCTGAGGATAACGGACTCGCCGTTTCCGTTAAAGGACGAAGGTGATAGCCAGGTGGACAAGGAAGCTGAGGAGTTTATCAAGAGGTTTTACAAGGATCTCAAGTTGCAGAAACGATCGGCTGCCCTTGAATCGCCATCATACCATGCCATGCGTGGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

211

Amino Acids

23.97

Weight (kDa)

9.62

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 173 - 195 9e-09 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012845)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29110
fragaria_vesca FvH4_1g05960
malus_domestica MD02G1064200.v1.1 MD15G1195000.v1.1
prunus_persica Prupe.7G221500_v2.0.a1
pyrus_communis pycom02g05030 pycom15g17440
rosa_chinensis RchiOBHm_Chr2g0091581 RchiOBHm_Chr2g0091651
rosa_laevigata RLG00000016240
rosa_multiflora Rmu_sc0000897.1_g000013
rosa_roxburghii Rroxscaffold_2G00149850
rosa_rugosa Rorug02G0019200
rosa_samantha Rh2AG064400 Rh2BG063600 Rh2CG065300 Rh2DG063700
rosa_wichuraiana Rw2G005610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 77
AccB7I CCANNNNNTGG 1 cut(s) 446
AccBSI CCGCTC 1 cut(s) 201
AccI GTMKAC 1 cut(s) 108
AciI CCGC 6 cut(s) 20, 186, 199, 264, 371, 425
AclWI GGATC 1 cut(s) 573
AcuI CTGAAG 1 cut(s) 175
AdeI CACNNNGTG 1 cut(s) 368
AfaI GTAC 2 cut(s) 54, 239
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 3 cut(s) 289, 397, 599
AjnI CCWGG 2 cut(s) 439, 519
AluBI AGCT 7 cut(s) 84, 100, 139, 195, 249, 472, 536
AluI AGCT 7 cut(s) 84, 100, 139, 195, 249, 472, 536
AlwI GGATC 1 cut(s) 573
Ama87I CYCGRG 1 cut(s) 231
AoxI GGCC 2 cut(s) 210, 417
ApeKI GCWGC 5 cut(s) 195, 249, 252, 469, 590
AspLEI GCGC 2 cut(s) 78, 297
AspS9I GGNCC 1 cut(s) 211
AsuHPI GGTGA 2 cut(s) 475, 524
AsuNHI GCTAGC 1 cut(s) 139
AvaI CYCGRG 1 cut(s) 231
BanII GRGCYC 1 cut(s) 458
BbvCI CCTCAGC 2 cut(s) 473, 537
BbvI GCAGC 5 cut(s) 182, 236, 264, 481, 577
BccI CCATC 1 cut(s) 613
BceAI ACGGC 2 cut(s) 251, 475
BciT130I CCWGG 2 cut(s) 441, 521
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 7 cut(s) 196, 199, 250, 253, 425, 470, 591
BlsI GCNGC 7 cut(s) 197, 200, 251, 254, 426, 471, 592
Bme1390I CCNGG 2 cut(s) 441, 521
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 211
BmrFI CCNGG 2 cut(s) 441, 521
BmsI GCATC 1 cut(s) 111
BmtI GCTAGC 1 cut(s) 143
Bpu10I CCTNAGC 2 cut(s) 473, 537
BpuEI CTTGAG 2 cut(s) 407, 554
BsaJI CCNNGG 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 333
BseBI CCWGG 2 cut(s) 441, 521
BseDI CCNNGG 1 cut(s) 440
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMII CTCAG 3 cut(s) 356, 464, 528
BseNI ACTGG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 554
BseXI GCAGC 5 cut(s) 182, 236, 264, 481, 577
Bsh1285I CGRYCG 1 cut(s) 587
BshFI GGCC 2 cut(s) 212, 419
BsiEI CGRYCG 1 cut(s) 587
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 446
BsnI GGCC 2 cut(s) 212, 419
BsoBI CYCGRG 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 2 cut(s) 565, 584
BspACI CCGC 6 cut(s) 20, 186, 199, 264, 371, 425
BspANI GGCC 2 cut(s) 212, 419
BspCNI CTCAG 3 cut(s) 357, 465, 529
BspMAI CTGCAG 1 cut(s) 254
BspOI GCTAGC 1 cut(s) 143
BspPI GGATC 1 cut(s) 573
BspQI GCTCTTC 2 cut(s) 86, 446
BsrBI CCGCTC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 1 cut(s) 333
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 440
BssMI GATC 2 cut(s) 565, 584
Bst2UI CCWGG 2 cut(s) 441, 521
Bst6I CTCTTC 2 cut(s) 86, 446
BstAPI GCANNNNNTGC 1 cut(s) 335
BstC8I GCNNGC 5 cut(s) 20, 98, 137, 141, 145
BstDEI CTNAG 4 cut(s) 49, 365, 473, 537
BstHHI GCGC 2 cut(s) 78, 297
BstKTI GATC 2 cut(s) 568, 587
BstMBI GATC 2 cut(s) 565, 584
BstMCI CGRYCG 1 cut(s) 587
BstMWI GCNNNNNNNGC 4 cut(s) 149, 258, 335, 416
BstNI CCWGG 2 cut(s) 441, 521
BstSCI CCNGG 2 cut(s) 439, 519
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 5 cut(s) 182, 236, 264, 481, 577
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BsuRI GGCC 2 cut(s) 212, 419
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 3 cut(s) 340, 362, 417
Cac8I GCNNGC 5 cut(s) 20, 98, 137, 141, 145
CfoI GCGC 2 cut(s) 78, 297
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 211
Csp6I GTAC 2 cut(s) 53, 238
CviAII CATG 4 cut(s) 70, 169, 614, 619
CviQI GTAC 2 cut(s) 53, 238
DdeI CTNAG 4 cut(s) 49, 365, 473, 537
DpnI GATC 2 cut(s) 567, 586
DpnII GATC 2 cut(s) 565, 584
DraIII CACNNNGTG 1 cut(s) 368
Eam1104I CTCTTC 2 cut(s) 86, 446
EarI CTCTTC 2 cut(s) 86, 446
EciI GGCGGA 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 458
Eco57I CTGAAG 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 2 cut(s) 439, 519
EcoT38I GRGCYC 1 cut(s) 458
FaeI CATG 4 cut(s) 73, 172, 617, 622
FaiI YATR 8 cut(s) 59, 71, 170, 340, 461, 610, 615, 620
FatI CATG 4 cut(s) 69, 168, 613, 618
FauI CCCGC 2 cut(s) 27, 271
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 7 cut(s) 196, 199, 250, 253, 425, 470, 591
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 7 cut(s) 196, 199, 250, 253, 425, 470, 591
FspBI CTAG 1 cut(s) 140
FspI TGCGCA 1 cut(s) 77
GlaI GCGC 2 cut(s) 77, 296
GluI GCNGC 7 cut(s) 196, 199, 250, 253, 425, 470, 591
HaeIII GGCC 2 cut(s) 212, 419
HapII CCGG 1 cut(s) 23
HhaI GCGC 2 cut(s) 78, 297
Hin1II CATG 4 cut(s) 73, 172, 617, 622
Hin6I GCGC 2 cut(s) 76, 295
HinP1I GCGC 2 cut(s) 76, 295
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 2 cut(s) 82, 98
HinfI GANTC 2 cut(s) 485, 599
HpaII CCGG 1 cut(s) 23
HphI GGTGA 2 cut(s) 475, 524
Hpy166II GTNNAC 3 cut(s) 109, 271, 526
Hpy188I TCNGA 1 cut(s) 378
Hpy188III TCNNGA 1 cut(s) 550
Hpy8I GTNNAC 3 cut(s) 109, 271, 526
Hpy99I CGWCG 2 cut(s) 353, 356
HpyAV CCTTC 4 cut(s) 199, 229, 373, 503
HpyCH4IV ACGT 2 cut(s) 130, 354
HpyCH4V TGCA 4 cut(s) 252, 338, 410, 577
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 258, 335, 416
HpyF3I CTNAG 4 cut(s) 49, 365, 473, 537
HpySE526I ACGT 2 cut(s) 130, 354
Hsp92II CATG 4 cut(s) 73, 172, 617, 622
HspAI GCGC 2 cut(s) 76, 295
Kzo9I GATC 2 cut(s) 565, 584
LguI GCTCTTC 2 cut(s) 86, 446
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 7 cut(s) 36, 129, 346, 426, 453, 506, 533
Lsp1109I GCAGC 5 cut(s) 182, 236, 264, 481, 577
LweI GCATC 1 cut(s) 111
MaeI CTAG 1 cut(s) 140
MaeII ACGT 2 cut(s) 130, 354
MaeIII GTNAC 1 cut(s) 430
MalI GATC 2 cut(s) 567, 586
MbiI CCGCTC 1 cut(s) 201
MboI GATC 2 cut(s) 565, 584
MboII GAAGA 3 cut(s) 58, 103, 463
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 1 cut(s) 38
MlyI GAGTC 1 cut(s) 479
MseI TTAA 1 cut(s) 500
MspA1I CMGCKG 3 cut(s) 195, 249, 472
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 2 cut(s) 441, 521
MvaI CCWGG 2 cut(s) 441, 521
MwoI GCNNNNNNNGC 4 cut(s) 149, 258, 335, 416
NdeII GATC 2 cut(s) 565, 584
NheI GCTAGC 1 cut(s) 139
NlaIII CATG 4 cut(s) 73, 172, 617, 622
NmuCI GTSAC 1 cut(s) 430
NsbI TGCGCA 1 cut(s) 77
PceI AGGCCT 1 cut(s) 419
PciSI GCTCTTC 2 cut(s) 86, 446
PcsI WCGNNNNNNNCGW 2 cut(s) 488, 494
PfeI GAWTC 1 cut(s) 599
PflMI CCANNNNNTGG 1 cut(s) 446
PkrI GCNGC 7 cut(s) 197, 200, 251, 254, 426, 471, 592
Ple19I CGATCG 1 cut(s) 587
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
Psp6I CCWGG 2 cut(s) 439, 519
PspGI CCWGG 2 cut(s) 439, 519
PspPI GGNCC 1 cut(s) 211
PstI CTGCAG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 565
PvuI CGATCG 1 cut(s) 587
PvuII CAGCTG 3 cut(s) 195, 249, 472
RsaI GTAC 2 cut(s) 54, 239
RsaNI GTAC 2 cut(s) 53, 238
SalI GTCGAC 1 cut(s) 107
SapI GCTCTTC 2 cut(s) 86, 446
SaqAI TTAA 1 cut(s) 500
SatI GCNGC 7 cut(s) 196, 199, 250, 253, 425, 470, 591
Sau3AI GATC 2 cut(s) 565, 584
Sau96I GGNCC 1 cut(s) 211
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 2 cut(s) 441, 521
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 1 cut(s) 250
SmlI CTYRAG 2 cut(s) 386, 569
SmoI CTYRAG 2 cut(s) 386, 569
Sse9I AATT 1 cut(s) 38
SseBI AGGCCT 1 cut(s) 419
SsiI CCGC 6 cut(s) 20, 186, 199, 264, 371, 425
SspMI CTAG 1 cut(s) 140
StuI AGGCCT 1 cut(s) 419
StyD4I CCNGG 2 cut(s) 439, 519
TaiI ACGT 2 cut(s) 133, 357
TaqI TCGA 3 cut(s) 89, 108, 628
TasI AATT 1 cut(s) 38
TauI GCSGC 2 cut(s) 201, 427
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TscAI CASTG 3 cut(s) 340, 369, 417
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 5 cut(s) 195, 249, 252, 469, 590
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 3 cut(s) 58, 211, 272
TspGWI ACGGA 2 cut(s) 486, 497
TspRI CASTG 3 cut(s) 340, 369, 417
Van91I CCANNNNNTGG 1 cut(s) 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.