pycom15g17440

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012845
Physical Location & Seq
Forward (+)
12302345 .. 12303019
675 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g17440.1

Sequence Viewer

Length: 675 bp
ATGGAAGTAGAGCCAAGCCCACCAGTTGTGGCAAAGAAATTGTGGAACTTAGTACGCATAATGTTCTTCATGTTGCGCAAAGGCTTATCCAAGAGCAAGCTTATTGTCGACCTCCATTTGATGCTCAAACGTGGCAAGCTAGCAGGCAAGGCATTAGCCAACAACCTCATGCTCCACCACACCTCCGCCTTCAGCTGCCGCTCAAACGACGCTGTCTCCTTCGTCACTCCCCGAGAGTACGAGTTCAGCTGCAGCAACAGCCCCGCCATTCACAACCCTTTTCATTTCAACAAGCGCAACAAACACCACCACCACTATTTTCCCAAATCAACCAGTGCGTACCAATACGACGACGTTAGCACTATGAGTGCAGTTCAGAAGGTGCTTGAGATGTTGAACAATGAGATGGCGGTGGAGGCCTCGCCGCTTGTGACATTGCCTGGGTTTGGGAAGAGCCCTATGGTGAGGCAGCTGAGGATAACGGACTCCCCGTTTCCGTTAAAGGACGAAGGTGATAGCCAGGTGGACAAGGAAGCTGAGGAGTTTATTAAGAGATTTTACAAGGATCGATCAAGTTGCAGAAACGATCGACTGCCCTCGAATCTCCGTCATACCGTGCCATGCGCGGTCGATGAGAGAATGGGCACAAAATTTAATTTCAACTCGGTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

225

Amino Acids

25.68

Weight (kDa)

9.43

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012845)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29110
fragaria_vesca FvH4_1g05960
malus_domestica MD02G1064200.v1.1 MD15G1195000.v1.1
prunus_persica Prupe.7G221500_v2.0.a1
pyrus_communis pycom02g05030 pycom15g17440
rosa_chinensis RchiOBHm_Chr2g0091581 RchiOBHm_Chr2g0091651
rosa_laevigata RLG00000016240
rosa_multiflora Rmu_sc0000897.1_g000013
rosa_roxburghii Rroxscaffold_2G00149850
rosa_rugosa Rorug02G0019200
rosa_samantha Rh2AG064400 Rh2BG063600 Rh2CG065300 Rh2DG063700
rosa_wichuraiana Rw2G005610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 77
AccBSI CCGCTC 1 cut(s) 201
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 626
AciI CCGC 6 cut(s) 186, 199, 264, 410, 425, 626
AclWI GGATC 1 cut(s) 573
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 1 cut(s) 175
AfaI GTAC 3 cut(s) 54, 239, 341
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 3 cut(s) 289, 397, 661
AjnI CCWGG 2 cut(s) 439, 519
AluBI AGCT 6 cut(s) 100, 139, 195, 249, 472, 536
AluI AGCT 6 cut(s) 100, 139, 195, 249, 472, 536
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 1 cut(s) 573
Ama87I CYCGRG 1 cut(s) 231
AoxI GGCC 1 cut(s) 417
ApeKI GCWGC 4 cut(s) 195, 249, 252, 469
ApoI RAATTY 1 cut(s) 650
AspLEI GCGC 3 cut(s) 78, 297, 626
AsuHPI GGTGA 2 cut(s) 475, 524
AsuNHI GCTAGC 1 cut(s) 139
AvaI CYCGRG 1 cut(s) 231
BaeGI GKGCMC 1 cut(s) 647
BanII GRGCYC 1 cut(s) 458
BbvCI CCTCAGC 2 cut(s) 473, 537
BbvI GCAGC 4 cut(s) 182, 236, 264, 481
BccI CCATC 1 cut(s) 400
BcgI CGANNNNNNTGC 2 cut(s) 558, 592
BciT130I CCWGG 2 cut(s) 441, 521
BcoDI GTCTC 1 cut(s) 220
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 6 cut(s) 196, 199, 250, 253, 425, 470
BlsI GCNGC 6 cut(s) 197, 200, 251, 254, 426, 471
Bme1390I CCNGG 2 cut(s) 441, 521
BmeT110I CYCGRG 1 cut(s) 231
BmrFI CCNGG 2 cut(s) 441, 521
BmsI GCATC 1 cut(s) 111
BmtI GCTAGC 1 cut(s) 143
Bpu10I CCTNAGC 2 cut(s) 473, 537
BpuEI CTTGAG 1 cut(s) 407
Bsa29I ATCGAT 1 cut(s) 568
BsaJI CCNNGG 1 cut(s) 440
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse1I ACTGG 2 cut(s) 23, 333
Bse3DI GCAATG 1 cut(s) 434
BseBI CCWGG 2 cut(s) 441, 521
BseCI ATCGAT 1 cut(s) 568
BseDI CCNNGG 1 cut(s) 440
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 1 cut(s) 434
BseMII CTCAG 2 cut(s) 464, 528
BseNI ACTGG 2 cut(s) 23, 333
BseRI GAGGAG 1 cut(s) 554
BseSI GKGCMC 1 cut(s) 647
BseXI GCAGC 4 cut(s) 182, 236, 264, 481
BsgI GTGCAG 1 cut(s) 390
Bsh1236I CGCG 1 cut(s) 626
Bsh1285I CGRYCG 2 cut(s) 589, 630
BshFI GGCC 1 cut(s) 419
BshVI ATCGAT 1 cut(s) 568
BsiEI CGRYCG 2 cut(s) 589, 630
BsiHKCI CYCGRG 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 1 cut(s) 220
BsnI GGCC 1 cut(s) 419
BsoBI CYCGRG 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 458, 647
Bsp143I GATC 3 cut(s) 565, 569, 586
BspACI CCGC 6 cut(s) 186, 199, 264, 410, 425, 626
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 2 cut(s) 465, 529
BspDI ATCGAT 1 cut(s) 568
BspFNI CGCG 1 cut(s) 626
BspMAI CTGCAG 1 cut(s) 254
BspOI GCTAGC 1 cut(s) 143
BspPI GGATC 1 cut(s) 573
BspQI GCTCTTC 1 cut(s) 446
BsrBI CCGCTC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 434
BsrI ACTGG 2 cut(s) 23, 333
BssECI CCNNGG 1 cut(s) 440
BssMI GATC 3 cut(s) 565, 569, 586
Bst2UI CCWGG 2 cut(s) 441, 521
Bst4CI ACNGT 1 cut(s) 616
Bst6I CTCTTC 1 cut(s) 446
BstC8I GCNNGC 4 cut(s) 98, 137, 141, 145
BstDEI CTNAG 3 cut(s) 49, 473, 537
BstFNI CGCG 1 cut(s) 626
BstHHI GCGC 3 cut(s) 78, 297, 626
BstKTI GATC 3 cut(s) 568, 572, 589
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 3 cut(s) 565, 569, 586
BstMCI CGRYCG 2 cut(s) 589, 630
BstMWI GCNNNNNNNGC 3 cut(s) 149, 258, 416
BstNI CCWGG 2 cut(s) 441, 521
BstSCI CCNGG 2 cut(s) 439, 519
BstSFI CTRYAG 1 cut(s) 250
BstSLI GKGCMC 1 cut(s) 647
BstUI CGCG 1 cut(s) 626
BstV1I GCAGC 4 cut(s) 182, 236, 264, 481
Bsu15I ATCGAT 1 cut(s) 568
BsuRI GGCC 1 cut(s) 419
BsuTUI ATCGAT 1 cut(s) 568
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 4 cut(s) 98, 137, 141, 145
CfoI GCGC 3 cut(s) 78, 297, 626
ClaI ATCGAT 1 cut(s) 568
CseI GACGC 1 cut(s) 218
Csp6I GTAC 3 cut(s) 53, 238, 340
CviAII CATG 3 cut(s) 70, 169, 621
CviQI GTAC 3 cut(s) 53, 238, 340
DdeI CTNAG 3 cut(s) 49, 473, 537
DpnI GATC 3 cut(s) 567, 571, 588
DpnII GATC 3 cut(s) 565, 569, 586
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
EciI GGCGGA 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 458
Eco57I CTGAAG 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 439, 519
EcoT38I GRGCYC 1 cut(s) 458
FaeI CATG 3 cut(s) 73, 172, 624
FaiI YATR 7 cut(s) 59, 71, 170, 365, 461, 612, 622
FatI CATG 3 cut(s) 69, 168, 620
FauI CCCGC 1 cut(s) 271
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 6 cut(s) 196, 199, 250, 253, 425, 470
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 6 cut(s) 196, 199, 250, 253, 425, 470
FspBI CTAG 1 cut(s) 140
FspI TGCGCA 1 cut(s) 77
GlaI GCGC 3 cut(s) 77, 296, 625
GluI GCNGC 6 cut(s) 196, 199, 250, 253, 425, 470
HaeIII GGCC 1 cut(s) 419
HgaI GACGC 1 cut(s) 218
HhaI GCGC 3 cut(s) 78, 297, 626
Hin1II CATG 3 cut(s) 73, 172, 624
Hin6I GCGC 3 cut(s) 76, 295, 624
HinP1I GCGC 3 cut(s) 76, 295, 624
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 485, 601
HphI GGTGA 2 cut(s) 475, 524
Hpy166II GTNNAC 2 cut(s) 109, 526
Hpy188I TCNGA 1 cut(s) 378
Hpy8I GTNNAC 2 cut(s) 109, 526
Hpy99I CGWCG 3 cut(s) 212, 353, 356
HpyAV CCTTC 4 cut(s) 199, 229, 373, 503
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4IV ACGT 2 cut(s) 130, 354
HpyCH4V TGCA 3 cut(s) 252, 371, 579
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 258, 416
HpyF3I CTNAG 3 cut(s) 49, 473, 537
HpySE526I ACGT 2 cut(s) 130, 354
Hsp92II CATG 3 cut(s) 73, 172, 624
HspAI GCGC 3 cut(s) 76, 295, 624
Kzo9I GATC 3 cut(s) 565, 569, 586
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 7 cut(s) 36, 129, 346, 426, 453, 506, 533
Lsp1109I GCAGC 4 cut(s) 182, 236, 264, 481
LweI GCATC 1 cut(s) 111
MaeI CTAG 1 cut(s) 140
MaeII ACGT 2 cut(s) 130, 354
MaeIII GTNAC 2 cut(s) 223, 430
MalI GATC 3 cut(s) 567, 571, 588
MbiI CCGCTC 1 cut(s) 201
MboI GATC 3 cut(s) 565, 569, 586
MboII GAAGA 2 cut(s) 58, 463
MhlI GDGCHC 2 cut(s) 458, 647
MluCI AATT 3 cut(s) 38, 650, 655
MlyI GAGTC 1 cut(s) 479
MnlI CCTC 9 cut(s) 122, 176, 193, 409, 430, 459, 468, 532, 607
MseI TTAA 4 cut(s) 500, 549, 654, 673
MspA1I CMGCKG 3 cut(s) 195, 249, 472
MspR9I CCNGG 2 cut(s) 441, 521
MvaI CCWGG 2 cut(s) 441, 521
MvnI CGCG 1 cut(s) 626
MwoI GCNNNNNNNGC 3 cut(s) 149, 258, 416
NdeII GATC 3 cut(s) 565, 569, 586
NheI GCTAGC 1 cut(s) 139
NlaIII CATG 3 cut(s) 73, 172, 624
NmuCI GTSAC 2 cut(s) 223, 430
NsbI TGCGCA 1 cut(s) 77
PceI AGGCCT 1 cut(s) 419
PciSI GCTCTTC 1 cut(s) 446
PcsI WCGNNNNNNNCGW 1 cut(s) 488
PfeI GAWTC 1 cut(s) 601
PflFI GACNNNGTC 1 cut(s) 212
PkrI GCNGC 6 cut(s) 197, 200, 251, 254, 426, 471
Ple19I CGATCG 1 cut(s) 589
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
Psp6I CCWGG 2 cut(s) 439, 519
PspGI CCWGG 2 cut(s) 439, 519
PstI CTGCAG 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 212
PvuI CGATCG 1 cut(s) 589
PvuII CAGCTG 3 cut(s) 195, 249, 472
RsaI GTAC 3 cut(s) 54, 239, 341
RsaNI GTAC 3 cut(s) 53, 238, 340
SalI GTCGAC 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 4 cut(s) 500, 549, 654, 673
SatI GCNGC 6 cut(s) 196, 199, 250, 253, 425, 470
Sau3AI GATC 3 cut(s) 565, 569, 586
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 2 cut(s) 441, 521
SduI GDGCHC 2 cut(s) 458, 647
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 3 cut(s) 38, 650, 655
SseBI AGGCCT 1 cut(s) 419
SsiI CCGC 6 cut(s) 186, 199, 264, 410, 425, 626
SspMI CTAG 1 cut(s) 140
StuI AGGCCT 1 cut(s) 419
StyD4I CCNGG 2 cut(s) 439, 519
TaaI ACNGT 1 cut(s) 616
TaiI ACGT 2 cut(s) 133, 357
TaqI TCGA 5 cut(s) 108, 568, 589, 599, 630
TasI AATT 3 cut(s) 38, 650, 655
TauI GCSGC 2 cut(s) 201, 427
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 4 cut(s) 500, 549, 654, 673
Tru9I TTAA 4 cut(s) 500, 549, 654, 673
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 2 cut(s) 223, 430
TseI GCWGC 4 cut(s) 195, 249, 252, 469
Tsp45I GTSAC 2 cut(s) 223, 430
TspDTI ATGAA 2 cut(s) 58, 272
TspGWI ACGGA 3 cut(s) 486, 497, 596
TspRI CASTG 1 cut(s) 340
Tth111I GACNNNGTC 1 cut(s) 212
XapI RAATTY 1 cut(s) 650
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.