RchiOBHm_Chr2g0091651

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012845
Physical Location & Seq
Forward (+)
5317120 .. 5318117
998 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46682

Sequence Viewer

Length: 660 bp
ATGGAAGTGGAACCAAGCCCGCCTGTGGTGGCCAAGAAGCTATGGAACCTAGTACGGATAGTGTTCTTCATGTTGCGAAAGGGCTTGACGAAAAGCAAGTTATTAGTCGACCTCCATTTGATGCTCAAGCGCGGCAAGCTAGCCAGCAAAGCCATCGCAAACAACCTCATCATGCTCCACCACTCCTCCAACTCCGCCTTCAGCTGCCGCTCTAACGACGCCGTTTCGTTCGTCACCCCCCGTGAATATGAGTTCAGCTGCAGCAACAGCCCTGCCACCCACAACCCTTTCCTTTTCCACCACAAGCGCAACAAGCACCACCACCACCACGGATACTTTGCGAAAAATACTTCTGCCACAGCCGCCGCGTATCAATACGATGATGTGACCACCGCGGCGGCGGTGCAGAGGGTTCTTGAGATGCTGAACAATGAGATGGTGGCGGAGGCGTCGCCAATGGTGACGCTGCCAGGGTTCGGGAAGAGCCCGATGGTGAGGCAGCTGAGGATAACGGACTCGCCGTTTCCGATGAAGGAAGAGGGAGATAGCCAGGTAGACAAGGAAGCTGAGGAATTTATTAAGAAGTTCTATAAAGACCTCAAGTTGCAGAAAAGGACATCTGCTCTTGAATCACCATACCGTGCTTTGCGAAGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

219

Amino Acids

24.92

Weight (kDa)

9.69

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 183 - 209 4.4e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012845)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29110
fragaria_vesca FvH4_1g05960
malus_domestica MD02G1064200.v1.1 MD15G1195000.v1.1
prunus_persica Prupe.7G221500_v2.0.a1
pyrus_communis pycom02g05030 pycom15g17440
rosa_chinensis RchiOBHm_Chr2g0091581 RchiOBHm_Chr2g0091651
rosa_laevigata RLG00000016240
rosa_multiflora Rmu_sc0000897.1_g000013
rosa_roxburghii Rroxscaffold_2G00149850
rosa_rugosa Rorug02G0019200
rosa_samantha Rh2AG064400 Rh2BG063600 Rh2CG065300 Rh2DG063700
rosa_wichuraiana Rw2G005610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 210
AccI GTMKAC 2 cut(s) 108, 555
AccII CGCG 3 cut(s) 132, 368, 395
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 1 cut(s) 184
AcyI GRCGYC 2 cut(s) 219, 449
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 25, 476
AgsI TTSAA 1 cut(s) 629
AjnI CCWGG 2 cut(s) 469, 549
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 6 cut(s) 40, 139, 204, 258, 502, 566
AluI AGCT 6 cut(s) 40, 139, 204, 258, 502, 566
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 5 cut(s) 204, 258, 261, 466, 499
ApoI RAATTY 1 cut(s) 572
AspLEI GCGC 2 cut(s) 132, 309
AsuHPI GGTGA 4 cut(s) 226, 472, 505, 624
AsuNHI GCTAGC 1 cut(s) 139
BalI TGGCCA 1 cut(s) 32
BanII GRGCYC 1 cut(s) 488
BbvCI CCTCAGC 2 cut(s) 503, 567
BbvI GCAGC 5 cut(s) 191, 245, 273, 453, 511
BccI CCATC 3 cut(s) 161, 430, 484
BceAI ACGGC 2 cut(s) 206, 505
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 2 cut(s) 471, 551
BciVI GTATCC 1 cut(s) 326
BfaI CTAG 2 cut(s) 50, 140
BfmI CTRYAG 1 cut(s) 259
BfuI GTATCC 1 cut(s) 326
Bme1390I CCNGG 2 cut(s) 471, 551
BmiI GGNNCC 2 cut(s) 12, 47
BmrFI CCNGG 2 cut(s) 471, 551
BmsI GCATC 2 cut(s) 111, 411
BmtI GCTAGC 1 cut(s) 143
Bpu10I CCTNAGC 2 cut(s) 503, 567
BpuEI CTTGAG 3 cut(s) 110, 437, 584
BsaHI GRCGYC 2 cut(s) 219, 449
BsaJI CCNNGG 3 cut(s) 328, 393, 470
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 476
BseBI CCWGG 2 cut(s) 471, 551
BseDI CCNNGG 3 cut(s) 328, 393, 470
BseLI CCNNNNNNNGG 2 cut(s) 25, 476
BseMII CTCAG 2 cut(s) 494, 558
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 5 cut(s) 191, 245, 273, 453, 511
BsgI GTGCAG 1 cut(s) 425
Bsh1236I CGCG 3 cut(s) 132, 368, 395
BshFI GGCC 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 25, 476
BsnI GGCC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 488
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 495, 559
BspFNI CGCG 3 cut(s) 132, 368, 395
BspLI GGNNCC 2 cut(s) 12, 47
BspMAI CTGCAG 1 cut(s) 263
BspOI GCTAGC 1 cut(s) 143
BspQI GCTCTTC 1 cut(s) 476
BsrBI CCGCTC 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 328, 393, 470
BssNI GRCGYC 2 cut(s) 219, 449
Bst2UI CCWGG 2 cut(s) 471, 551
Bst4CI ACNGT 1 cut(s) 641
Bst6I CTCTTC 2 cut(s) 476, 531
BstACI GRCGYC 2 cut(s) 219, 449
BstC8I GCNNGC 4 cut(s) 20, 137, 141, 145
BstDEI CTNAG 2 cut(s) 503, 567
BstDSI CCRYGG 2 cut(s) 328, 393
BstFNI CGCG 3 cut(s) 132, 368, 395
BstHHI GCGC 2 cut(s) 132, 309
BstMWI GCNNNNNNNGC 5 cut(s) 136, 149, 267, 313, 362
BstNI CCWGG 2 cut(s) 471, 551
BstSCI CCNGG 2 cut(s) 469, 549
BstSFI CTRYAG 1 cut(s) 259
BstUI CGCG 3 cut(s) 132, 368, 395
BstV1I GCAGC 5 cut(s) 191, 245, 273, 453, 511
BsuI GTATCC 1 cut(s) 326
BsuRI GGCC 1 cut(s) 32
BtgI CCRYGG 2 cut(s) 328, 393
BtgZI GCGATG 1 cut(s) 139
Cac8I GCNNGC 4 cut(s) 20, 137, 141, 145
CfoI GCGC 2 cut(s) 132, 309
Cfr42I CCGCGG 1 cut(s) 396
CseI GACGC 3 cut(s) 227, 438, 472
Csp6I GTAC 1 cut(s) 53
CviAII CATG 2 cut(s) 70, 172
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 2 cut(s) 503, 567
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 476, 531
EarI CTCTTC 2 cut(s) 476, 531
EciI GGCGGA 2 cut(s) 184, 458
Eco24I GRGCYC 1 cut(s) 488
Eco57I CTGAAG 1 cut(s) 184
EcoRII CCWGG 2 cut(s) 469, 549
EcoT38I GRGCYC 1 cut(s) 488
FaeI CATG 2 cut(s) 73, 175
FaiI YATR 6 cut(s) 43, 71, 173, 249, 591, 637
FatI CATG 2 cut(s) 69, 171
FauI CCCGC 1 cut(s) 27
FblI GTMKAC 2 cut(s) 108, 555
FriOI GRGCYC 1 cut(s) 488
FspBI CTAG 2 cut(s) 50, 140
GlaI GCGC 2 cut(s) 131, 308
HaeIII GGCC 1 cut(s) 32
HgaI GACGC 3 cut(s) 227, 438, 472
HhaI GCGC 2 cut(s) 132, 309
Hin1I GRCGYC 2 cut(s) 219, 449
Hin1II CATG 2 cut(s) 73, 175
Hin6I GCGC 2 cut(s) 130, 307
HinP1I GCGC 2 cut(s) 130, 307
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 2 cut(s) 515, 629
HphI GGTGA 4 cut(s) 226, 472, 505, 624
Hpy166II GTNNAC 2 cut(s) 109, 556
Hpy188I TCNGA 1 cut(s) 528
Hpy188III TCNNGA 3 cut(s) 416, 478, 626
Hpy8I GTNNAC 2 cut(s) 109, 556
Hpy99I CGWCG 2 cut(s) 221, 454
HpyAV CCTTC 2 cut(s) 208, 526
HpyCH4III ACNGT 1 cut(s) 641
HpyCH4V TGCA 3 cut(s) 261, 406, 607
HpyF10VI GCNNNNNNNGC 5 cut(s) 136, 149, 267, 313, 362
HpyF3I CTNAG 2 cut(s) 503, 567
Hsp92I GRCGYC 2 cut(s) 219, 449
Hsp92II CATG 2 cut(s) 73, 175
HspAI GCGC 2 cut(s) 130, 307
KspI CCGCGG 1 cut(s) 396
LguI GCTCTTC 1 cut(s) 476
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 7 cut(s) 36, 157, 285, 456, 483, 536, 563
Lsp1109I GCAGC 5 cut(s) 191, 245, 273, 453, 511
LweI GCATC 2 cut(s) 111, 411
MaeI CTAG 2 cut(s) 50, 140
MaeIII GTNAC 3 cut(s) 232, 385, 460
MbiI CCGCTC 1 cut(s) 210
MboII GAAGA 3 cut(s) 58, 493, 548
MhlI GDGCHC 1 cut(s) 488
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 1 cut(s) 572
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 1 cut(s) 213
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 1 cut(s) 579
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 4 cut(s) 204, 258, 395, 502
MspR9I CCNGG 2 cut(s) 471, 551
MvaI CCWGG 2 cut(s) 471, 551
MvnI CGCG 3 cut(s) 132, 368, 395
MwoI GCNNNNNNNGC 5 cut(s) 136, 149, 267, 313, 362
NheI GCTAGC 1 cut(s) 139
NlaIII CATG 2 cut(s) 73, 175
NlaIV GGNNCC 2 cut(s) 12, 47
NmuCI GTSAC 3 cut(s) 232, 385, 460
PciSI GCTCTTC 1 cut(s) 476
PcsI WCGNNNNNNNCGW 2 cut(s) 518, 524
PfeI GAWTC 1 cut(s) 629
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
Psp6I CCWGG 2 cut(s) 469, 549
PspGI CCWGG 2 cut(s) 469, 549
PspN4I GGNNCC 2 cut(s) 12, 47
PstI CTGCAG 1 cut(s) 263
PvuII CAGCTG 3 cut(s) 204, 258, 502
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SacII CCGCGG 1 cut(s) 396
SalI GTCGAC 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 476
SaqAI TTAA 1 cut(s) 579
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 2 cut(s) 471, 551
SduI GDGCHC 1 cut(s) 488
SfaNI GCATC 2 cut(s) 111, 411
SfcI CTRYAG 1 cut(s) 259
Sfr303I CCGCGG 1 cut(s) 396
SgrBI CCGCGG 1 cut(s) 396
SmlI CTYRAG 3 cut(s) 125, 416, 599
SmoI CTYRAG 3 cut(s) 125, 416, 599
Sse9I AATT 1 cut(s) 572
SspMI CTAG 2 cut(s) 50, 140
StyD4I CCNGG 2 cut(s) 469, 549
TaaI ACNGT 1 cut(s) 641
TaqI TCGA 2 cut(s) 108, 655
TasI AATT 1 cut(s) 572
TauI GCSGC 6 cut(s) 135, 210, 365, 368, 398, 401
TfiI GAWTC 1 cut(s) 629
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TseFI GTSAC 3 cut(s) 232, 385, 460
TseI GCWGC 5 cut(s) 204, 258, 261, 466, 499
Tsp45I GTSAC 3 cut(s) 232, 385, 460
TspDTI ATGAA 2 cut(s) 58, 545
TspGWI ACGGA 3 cut(s) 70, 345, 527
XapI RAATTY 1 cut(s) 572
XmiI GTMKAC 2 cut(s) 108, 555
XspI CTAG 2 cut(s) 50, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.