Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012845

Physical Location & Seq

Genomic Coordinates Forward (+)

5229431 .. 5230422

Gene Structure 992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46675

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAAGTGGAACCAAGCCCGCCTGTGGTGGCCAAGAAGCTATGGAACCTAGTACGGATAGTGTTCTTCATGTTGCGAAAGGGCTTGACGAAAAGCAAGTTATTAGTCGACCTCCATTTGATGCTCAAGCGCGGCAAGCTAGCCAGCAAAGCCATCGCAAACAACCTCATCATGCTCCACCACTCCTCCAACTCCGCCTTCAGCTGCCGCTCTAACGACGCCGTTTCGTTCGTCACCCCCGTGAATATGAGTTCAGCTGCAGCAACAGCCCTGCCACCCACAACCCTTTCCTTTTCCACCACAAGCGCAACAAGCACCACCACCACCACGGATACTTTGCGAAAAATACTTCTGCCACAGCCGCCGCGTATCAATACGATGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

128

Amino Acids

13.97

Weight (kDa)

10.77

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29110
fragaria_vesca	FvH4_1g05960
malus_domestica	MD02G1064200.v1.1 MD15G1195000.v1.1
prunus_persica	Prupe.7G221500_v2.0.a1
pyrus_communis	pycom02g05030 pycom15g17440
rosa_chinensis	RchiOBHm_Chr2g0091581 RchiOBHm_Chr2g0091651
rosa_laevigata	RLG00000016240
rosa_multiflora	Rmu_sc0000897.1_g000013
rosa_roxburghii	Rroxscaffold_2G00149850
rosa_rugosa	Rorug02G0019200
rosa_samantha	Rh2AG064400 Rh2BG063600 Rh2CG065300 Rh2DG063700
rosa_wichuraiana	Rw2G005610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	2 cut(s)	132, 367
AciI	CCGC	6 cut(s)	20, 132, 195, 208, 362, 365
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AleI	CACNNNNGTG	1 cut(s)	239
AluBI	AGCT	4 cut(s)	40, 139, 204, 257
AluI	AGCT	4 cut(s)	40, 139, 204, 257
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	3 cut(s)	204, 257, 260
AspLEI	GCGC	2 cut(s)	132, 308
AsuHPI	GGTGA	1 cut(s)	226
AsuNHI	GCTAGC	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	32
BbvI	GCAGC	3 cut(s)	191, 244, 272
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	206
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciVI	GTATCC	1 cut(s)	325
BfaI	CTAG	2 cut(s)	50, 140
BfmI	CTRYAG	1 cut(s)	258
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	7 cut(s)	133, 205, 208, 258, 261, 362, 365
BlsI	GCNGC	7 cut(s)	134, 206, 209, 259, 262, 363, 366
BmiI	GGNNCC	2 cut(s)	12, 47
BmsI	GCATC	1 cut(s)	111
BmtI	GCTAGC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	327
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseRI	GAGGAG	1 cut(s)	175
BseXI	GCAGC	3 cut(s)	191, 244, 272
Bsh1236I	CGCG	2 cut(s)	132, 367
BshFI	GGCC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	25
BsnI	GGCC	1 cut(s)	32
BspACI	CCGC	6 cut(s)	20, 132, 195, 208, 362, 365
BspANI	GGCC	1 cut(s)	32
BspFNI	CGCG	2 cut(s)	132, 367
BspLI	GGNNCC	2 cut(s)	12, 47
BspMAI	CTGCAG	1 cut(s)	262
BspOI	GCTAGC	1 cut(s)	143
BsrBI	CCGCTC	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	327
BssNI	GRCGYC	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	4 cut(s)	20, 137, 141, 145
BstDSI	CCRYGG	1 cut(s)	327
BstFNI	CGCG	2 cut(s)	132, 367
BstHHI	GCGC	2 cut(s)	132, 308
BstMWI	GCNNNNNNNGC	5 cut(s)	136, 149, 266, 312, 361
BstSFI	CTRYAG	1 cut(s)	258
BstUI	CGCG	2 cut(s)	132, 367
BstV1I	GCAGC	3 cut(s)	191, 244, 272
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	327
BtgZI	GCGATG	1 cut(s)	139
Cac8I	GCNNGC	4 cut(s)	20, 137, 141, 145
CfoI	GCGC	2 cut(s)	132, 308
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	2 cut(s)	70, 172
CviQI	GTAC	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	184
FaeI	CATG	2 cut(s)	73, 175
FaiI	YATR	4 cut(s)	43, 71, 173, 248
FatI	CATG	2 cut(s)	69, 171
FauI	CCCGC	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	7 cut(s)	133, 205, 208, 258, 261, 362, 365
Fsp4HI	GCNGC	7 cut(s)	133, 205, 208, 258, 261, 362, 365
FspBI	CTAG	2 cut(s)	50, 140
GlaI	GCGC	2 cut(s)	131, 307
GluI	GCNGC	7 cut(s)	133, 205, 208, 258, 261, 362, 365
HaeIII	GGCC	1 cut(s)	32
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	2 cut(s)	132, 308
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	73, 175
Hin6I	GCGC	2 cut(s)	130, 306
HinP1I	GCGC	2 cut(s)	130, 306
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	208
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	5 cut(s)	136, 149, 266, 312, 361
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	73, 175
HspAI	GCGC	2 cut(s)	130, 306
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	3 cut(s)	36, 157, 284
Lsp1109I	GCAGC	3 cut(s)	191, 244, 272
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	2 cut(s)	50, 140
MaeIII	GTNAC	1 cut(s)	232
MbiI	CCGCTC	1 cut(s)	210
MboII	GAAGA	1 cut(s)	58
MlsI	TGGCCA	1 cut(s)	32
MluNI	TGGCCA	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	3 cut(s)	122, 176, 196
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	239
Msp20I	TGGCCA	1 cut(s)	32
MspA1I	CMGCKG	2 cut(s)	204, 257
MvnI	CGCG	2 cut(s)	132, 367
MwoI	GCNNNNNNNGC	5 cut(s)	136, 149, 266, 312, 361
NheI	GCTAGC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	73, 175
NlaIV	GGNNCC	2 cut(s)	12, 47
NmuCI	GTSAC	1 cut(s)	232
OliI	CACNNNNGTG	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PkrI	GCNGC	7 cut(s)	134, 206, 209, 259, 262, 363, 366
PspN4I	GGNNCC	2 cut(s)	12, 47
PstI	CTGCAG	1 cut(s)	262
PvuII	CAGCTG	2 cut(s)	204, 257
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	239
SalI	GTCGAC	1 cut(s)	107
SatI	GCNGC	7 cut(s)	133, 205, 208, 258, 261, 362, 365
SetI	ASST	7 cut(s)	42, 51, 114, 141, 168, 206, 259
SfaNI	GCATC	1 cut(s)	111
SfcI	CTRYAG	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SsiI	CCGC	6 cut(s)	20, 132, 195, 208, 362, 365
SspMI	CTAG	2 cut(s)	50, 140
TaqI	TCGA	1 cut(s)	108
TauI	GCSGC	4 cut(s)	135, 210, 364, 367
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	3 cut(s)	204, 257, 260
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	58
TspGWI	ACGGA	2 cut(s)	70, 344
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	2 cut(s)	50, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.