FvH4_1g05960

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012845
Physical Location & Seq
Forward (+)
3172126 .. 3173751
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05960.t1

Sequence Viewer

Length: 660 bp
ATGGAAGTGGAACCAAGCCCGCCTGTGGTAGCCAAGAAGCTATGGAACCTAGTACGGATAGTGTTCTTCATGATGCGAAAGGGCTTAACCAAAAGCAAGTTATTAGTCGACCTCAATATGATGCTCAAGCGCGGCAAGCTAGCTAGCAAAGCCATTGCAAACAACCTCATCATGCTCCACCACTCCTCCAACTACTCCGCCTTCAGCTGCCGCTCCAACGACGCCGTTTCTTTCGTCACTCCCCGTGAATACGAGTTCAGCTGCAGTAACAGCCCCGCCACCCACAACCCCTTCCATTTCCACCACAAGCGCAACAAGCACCACCACCATGGATATTTTGCCAAGAATCCAAGTGTCACCGCCGCGGCGTATCAATACGACGATGTTACCACGGCTGCGGCGGTGCAGAGGGTTCTTGAGATGCTGAACAATGAGATGGTGGCCGAGGCTTCGCCGATGGTGACGCTGCCGGGGTTCGGGAAAAGCCCGATGGTTAGGCAACTGAGGGTAACGGACTCGCCGTTTCCGATGAAGGAGGAGGGAGATAGCCAGGTCGACAAGGAAGCTGAGGAATTTATTAAGAGGTTCTATAAAGACCTCAAGTTGCAGAAAAGGACATCTGCTCTTGAATCACCATTTCGTCCTTTGCGAAGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

220

Amino Acids

25.03

Weight (kDa)

9.72

Isoelectric Point (pI)

52.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 183 - 209 8.5e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012845)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29110
fragaria_vesca FvH4_1g05960
malus_domestica MD02G1064200.v1.1 MD15G1195000.v1.1
prunus_persica Prupe.7G221500_v2.0.a1
pyrus_communis pycom02g05030 pycom15g17440
rosa_chinensis RchiOBHm_Chr2g0091581 RchiOBHm_Chr2g0091651
rosa_laevigata RLG00000016240
rosa_multiflora Rmu_sc0000897.1_g000013
rosa_roxburghii Rroxscaffold_2G00149850
rosa_rugosa Rorug02G0019200
rosa_samantha Rh2AG064400 Rh2BG063600 Rh2CG065300 Rh2DG063700
rosa_wichuraiana Rw2G005610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 213
AccI GTMKAC 2 cut(s) 108, 555
AccII CGCG 2 cut(s) 132, 365
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 25, 476
AgsI TTSAA 1 cut(s) 629
AjnI CCWGG 1 cut(s) 549
AluBI AGCT 6 cut(s) 40, 139, 143, 207, 261, 566
AluI AGCT 6 cut(s) 40, 139, 143, 207, 261, 566
AoxI GGCC 1 cut(s) 441
ApeKI GCWGC 4 cut(s) 207, 261, 395, 466
ApoI RAATTY 1 cut(s) 572
AspLEI GCGC 2 cut(s) 132, 312
AsuC2I CCSGG 1 cut(s) 471
AsuHPI GGTGA 3 cut(s) 349, 472, 624
AsuNHI GCTAGC 2 cut(s) 139, 143
BbvCI CCTCAGC 1 cut(s) 567
BbvI GCAGC 4 cut(s) 194, 248, 382, 453
BccI CCATC 3 cut(s) 430, 451, 484
BceAI ACGGC 3 cut(s) 209, 408, 505
BciT130I CCWGG 1 cut(s) 551
BcnI CCSGG 1 cut(s) 471
BfaI CTAG 3 cut(s) 50, 140, 144
BfmI CTRYAG 1 cut(s) 262
BisI GCNGC 9 cut(s) 133, 208, 211, 262, 363, 366, 396, 399, 467
BlsI GCNGC 9 cut(s) 134, 209, 212, 263, 364, 367, 397, 400, 468
Bme1390I CCNGG 2 cut(s) 471, 551
BmiI GGNNCC 2 cut(s) 12, 47
BmrFI CCNGG 2 cut(s) 471, 551
BmsI GCATC 3 cut(s) 63, 111, 411
BmtI GCTAGC 2 cut(s) 143, 147
Bpu10I CCTNAGC 1 cut(s) 567
BpuEI CTTGAG 3 cut(s) 110, 437, 584
BpuMI CCSGG 1 cut(s) 471
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 5 cut(s) 328, 363, 390, 444, 470
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 476
Bse3DI GCAATG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 551
BseDI CCNNGG 5 cut(s) 328, 363, 390, 444, 470
BseLI CCNNNNNNNGG 2 cut(s) 25, 476
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 2 cut(s) 494, 558
BseRI GAGGAG 2 cut(s) 175, 551
BseXI GCAGC 4 cut(s) 194, 248, 382, 453
BsgI GTGCAG 1 cut(s) 425
Bsh1236I CGCG 2 cut(s) 132, 365
BshFI GGCC 1 cut(s) 443
BsiSI CCGG 1 cut(s) 470
BslI CCNNNNNNNGG 2 cut(s) 25, 476
BsnI GGCC 1 cut(s) 443
Bsp19I CCATGG 1 cut(s) 328
BspANI GGCC 1 cut(s) 443
BspCNI CTCAG 2 cut(s) 495, 559
BspFNI CGCG 2 cut(s) 132, 365
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 12, 47
BspMAI CTGCAG 1 cut(s) 266
BspOI GCTAGC 2 cut(s) 143, 147
BsrBI CCGCTC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 153
BssECI CCNNGG 5 cut(s) 328, 363, 390, 444, 470
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 328
Bst2UI CCWGG 1 cut(s) 551
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 4 cut(s) 20, 137, 141, 145
BstDEI CTNAG 2 cut(s) 503, 567
BstDSI CCRYGG 3 cut(s) 328, 363, 390
BstFNI CGCG 2 cut(s) 132, 365
BstHHI GCGC 2 cut(s) 132, 312
BstMWI GCNNNNNNNGC 4 cut(s) 136, 149, 270, 316
BstNI CCWGG 1 cut(s) 551
BstSCI CCNGG 2 cut(s) 469, 549
BstSFI CTRYAG 1 cut(s) 262
BstUI CGCG 2 cut(s) 132, 365
BstV1I GCAGC 4 cut(s) 194, 248, 382, 453
BstXI CCANNNNNNTGG 1 cut(s) 329
BsuRI GGCC 1 cut(s) 443
BtgI CCRYGG 3 cut(s) 328, 363, 390
Cac8I GCNNGC 4 cut(s) 20, 137, 141, 145
CciI TCATGA 1 cut(s) 69
CfoI GCGC 2 cut(s) 132, 312
Cfr42I CCGCGG 1 cut(s) 366
CseI GACGC 2 cut(s) 230, 472
Csp6I GTAC 1 cut(s) 53
CviAII CATG 3 cut(s) 70, 172, 329
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 2 cut(s) 503, 567
EaeI YGGCCR 1 cut(s) 441
EciI GGCGGA 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 549
EcoT14I CCWWGG 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 3 cut(s) 73, 175, 332
FaiI YATR 6 cut(s) 43, 71, 119, 173, 330, 591
FatI CATG 3 cut(s) 69, 171, 328
FauI CCCGC 2 cut(s) 27, 283
FblI GTMKAC 2 cut(s) 108, 555
Fnu4HI GCNGC 9 cut(s) 133, 208, 211, 262, 363, 366, 396, 399, 467
Fsp4HI GCNGC 9 cut(s) 133, 208, 211, 262, 363, 366, 396, 399, 467
FspBI CTAG 3 cut(s) 50, 140, 144
GlaI GCGC 2 cut(s) 131, 311
GluI GCNGC 9 cut(s) 133, 208, 211, 262, 363, 366, 396, 399, 467
HaeIII GGCC 1 cut(s) 443
HapII CCGG 1 cut(s) 470
HgaI GACGC 2 cut(s) 230, 472
HhaI GCGC 2 cut(s) 132, 312
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 3 cut(s) 73, 175, 332
Hin6I GCGC 2 cut(s) 130, 310
HinP1I GCGC 2 cut(s) 130, 310
HincII GTYRAC 2 cut(s) 109, 556
HindII GTYRAC 2 cut(s) 109, 556
HinfI GANTC 3 cut(s) 346, 515, 629
HpaII CCGG 1 cut(s) 470
HphI GGTGA 3 cut(s) 349, 472, 624
Hpy166II GTNNAC 2 cut(s) 109, 556
Hpy188I TCNGA 1 cut(s) 528
Hpy188III TCNNGA 4 cut(s) 70, 416, 478, 626
Hpy8I GTNNAC 2 cut(s) 109, 556
Hpy99I CGWCG 2 cut(s) 224, 383
HpyAV CCTTC 3 cut(s) 211, 301, 526
HpyCH4V TGCA 4 cut(s) 158, 264, 406, 607
HpyF10VI GCNNNNNNNGC 4 cut(s) 136, 149, 270, 316
HpyF3I CTNAG 2 cut(s) 503, 567
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 3 cut(s) 73, 175, 332
HspAI GCGC 2 cut(s) 130, 310
KspI CCGCGG 1 cut(s) 366
LmnI GCTCC 2 cut(s) 180, 218
LpnPI CCDG 4 cut(s) 36, 483, 536, 563
Lsp1109I GCAGC 4 cut(s) 194, 248, 382, 453
LweI GCATC 3 cut(s) 63, 111, 411
MaeI CTAG 3 cut(s) 50, 140, 144
MaeIII GTNAC 6 cut(s) 235, 266, 355, 385, 460, 508
MbiI CCGCTC 1 cut(s) 213
MboII GAAGA 1 cut(s) 58
MluCI AATT 1 cut(s) 572
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 2 cut(s) 213, 240
MseI TTAA 2 cut(s) 86, 579
MslI CAYNNNNRTG 1 cut(s) 327
MspA1I CMGCKG 3 cut(s) 207, 261, 365
MspI CCGG 1 cut(s) 470
MspR9I CCNGG 2 cut(s) 471, 551
MvaI CCWGG 1 cut(s) 551
MvnI CGCG 2 cut(s) 132, 365
MwoI GCNNNNNNNGC 4 cut(s) 136, 149, 270, 316
NciI CCSGG 1 cut(s) 471
NcoI CCATGG 1 cut(s) 328
NheI GCTAGC 2 cut(s) 139, 143
NlaIII CATG 3 cut(s) 73, 175, 332
NlaIV GGNNCC 2 cut(s) 12, 47
NmeAIII GCCGAG 1 cut(s) 469
NmuCI GTSAC 3 cut(s) 235, 355, 460
PagI TCATGA 1 cut(s) 69
PcsI WCGNNNNNNNCGW 3 cut(s) 518, 524, 646
PfeI GAWTC 2 cut(s) 346, 629
PkrI GCNGC 9 cut(s) 134, 209, 212, 263, 364, 367, 397, 400, 468
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
Psp6I CCWGG 1 cut(s) 549
PspGI CCWGG 1 cut(s) 549
PspN4I GGNNCC 2 cut(s) 12, 47
PstI CTGCAG 1 cut(s) 266
PvuII CAGCTG 2 cut(s) 207, 261
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 327
SacII CCGCGG 1 cut(s) 366
SalI GTCGAC 2 cut(s) 107, 554
SaqAI TTAA 2 cut(s) 86, 579
SatI GCNGC 9 cut(s) 133, 208, 211, 262, 363, 366, 396, 399, 467
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 2 cut(s) 471, 551
SfaNI GCATC 3 cut(s) 63, 111, 411
SfcI CTRYAG 1 cut(s) 262
Sfr303I CCGCGG 1 cut(s) 366
SgrBI CCGCGG 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 327
SmlI CTYRAG 3 cut(s) 125, 416, 599
SmoI CTYRAG 3 cut(s) 125, 416, 599
Sse9I AATT 1 cut(s) 572
SspMI CTAG 3 cut(s) 50, 140, 144
StyD4I CCNGG 2 cut(s) 469, 549
StyI CCWWGG 1 cut(s) 328
TaqI TCGA 3 cut(s) 108, 555, 655
TasI AATT 1 cut(s) 572
TauI GCSGC 5 cut(s) 135, 213, 365, 368, 401
TfiI GAWTC 2 cut(s) 346, 629
Tru1I TTAA 2 cut(s) 86, 579
Tru9I TTAA 2 cut(s) 86, 579
TseFI GTSAC 3 cut(s) 235, 355, 460
TseI GCWGC 4 cut(s) 207, 261, 395, 466
Tsp45I GTSAC 3 cut(s) 235, 355, 460
TspDTI ATGAA 2 cut(s) 58, 545
TspGWI ACGGA 2 cut(s) 70, 527
XapI RAATTY 1 cut(s) 572
XmiI GTMKAC 2 cut(s) 108, 555
XspI CTAG 3 cut(s) 50, 140, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.