MD02G1064200.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0012845
Physical Location & Seq
Forward (+)
5181659 .. 5182609
951 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1064200.v1.1.491

Sequence Viewer

Length: 540 bp
ATGGAAGTAGAACCAAGCCCGCCGGTTGTGGCAAAGAAATTGTGGAACTTAGTACGCATAGCGTTCTTCATGTTGCGCAAAAGCTTATCGAAGAGCAAGCTTATTGTCGACCTCCATTTGATGCTCAAACGTGGCAAGCTAGCAGGCAAGGCAATAGCCAACAACCTCATGCTCCACCACAACTCCGCCTTCAGCTGCCGCTCAAACGAGGCCCTATCCTTCGTCACTCCCCGAGAGTACGAGTTCAGCTGTAGCAACAGCCCCGCCGTTCACAACCTTTTTCATTTCAACAAGCGCAACAAACACCACAACCACTATTTTCCCAAAGCAACCAGTGCGTACCAATACGACGACGTTAGCACTATGAGTGCGGTTCAGAAGGTGCTTGAGATGTTGAATAATGAGATTGCGGACGAAGGTGATAGCCAGGTGGACAGGGAAGCTGAGGAGTTTATTAAGAGATTTTACAAGGATCTCAAGTTGCAGAAACGATCGGCTGCCCTTGAATCTCCATCATACCATGCCATGCGTGGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

180

Amino Acids

20.63

Weight (kDa)

9.52

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 142 - 164 5.1e-09 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012845)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29110
fragaria_vesca FvH4_1g05960
malus_domestica MD02G1064200.v1.1 MD15G1195000.v1.1
prunus_persica Prupe.7G221500_v2.0.a1
pyrus_communis pycom02g05030 pycom15g17440
rosa_chinensis RchiOBHm_Chr2g0091581 RchiOBHm_Chr2g0091651
rosa_laevigata RLG00000016240
rosa_multiflora Rmu_sc0000897.1_g000013
rosa_roxburghii Rroxscaffold_2G00149850
rosa_rugosa Rorug02G0019200
rosa_samantha Rh2AG064400 Rh2BG063600 Rh2CG065300 Rh2DG063700
rosa_wichuraiana Rw2G005610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 77
AccBSI CCGCTC 1 cut(s) 201
AccI GTMKAC 1 cut(s) 108
AciI CCGC 6 cut(s) 20, 186, 199, 264, 371, 410
AclWI GGATC 1 cut(s) 480
AcuI CTGAAG 1 cut(s) 175
AfaI GTAC 3 cut(s) 54, 239, 341
AgsI TTSAA 3 cut(s) 289, 397, 506
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 6 cut(s) 84, 100, 139, 195, 249, 443
AluI AGCT 6 cut(s) 84, 100, 139, 195, 249, 443
AlwI GGATC 1 cut(s) 480
Ama87I CYCGRG 1 cut(s) 231
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 2 cut(s) 195, 497
AspLEI GCGC 2 cut(s) 78, 297
AspS9I GGNCC 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 431
AsuNHI GCTAGC 1 cut(s) 139
AvaI CYCGRG 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 444
BbvI GCAGC 2 cut(s) 182, 484
BccI CCATC 1 cut(s) 520
BceAI ACGGC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 428
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 3 cut(s) 196, 199, 498
BlsI GCNGC 3 cut(s) 197, 200, 499
Bme1390I CCNGG 1 cut(s) 428
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 1 cut(s) 111
BmtI GCTAGC 1 cut(s) 143
Bpu10I CCTNAGC 1 cut(s) 444
BpuEI CTTGAG 2 cut(s) 407, 461
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 428
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 461
BseXI GCAGC 2 cut(s) 182, 484
Bsh1285I CGRYCG 1 cut(s) 494
BshFI GGCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 494
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 1 cut(s) 23
BsnI GGCC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 231
Bsp143I GATC 2 cut(s) 472, 491
BspACI CCGC 6 cut(s) 20, 186, 199, 264, 371, 410
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 436
BspOI GCTAGC 1 cut(s) 143
BspPI GGATC 1 cut(s) 480
BspQI GCTCTTC 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 1 cut(s) 333
BssAI RCCGGY 1 cut(s) 22
BssMI GATC 2 cut(s) 472, 491
Bst2UI CCWGG 1 cut(s) 428
Bst6I CTCTTC 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 335
BstC8I GCNNGC 5 cut(s) 20, 98, 137, 141, 145
BstDEI CTNAG 2 cut(s) 49, 444
BstHHI GCGC 2 cut(s) 78, 297
BstKTI GATC 2 cut(s) 475, 494
BstMBI GATC 2 cut(s) 472, 491
BstMCI CGRYCG 1 cut(s) 494
BstMWI GCNNNNNNNGC 2 cut(s) 149, 335
BstNI CCWGG 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 426
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 182, 484
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BsuRI GGCC 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 5 cut(s) 20, 98, 137, 141, 145
CfoI GCGC 2 cut(s) 78, 297
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 211
Csp6I GTAC 3 cut(s) 53, 238, 340
CviAII CATG 4 cut(s) 70, 169, 521, 526
CviQI GTAC 3 cut(s) 53, 238, 340
DdeI CTNAG 2 cut(s) 49, 444
DpnI GATC 2 cut(s) 474, 493
DpnII GATC 2 cut(s) 472, 491
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
EciI GGCGGA 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 426
FaeI CATG 4 cut(s) 73, 172, 524, 529
FaiI YATR 7 cut(s) 59, 71, 170, 365, 517, 522, 527
FatI CATG 4 cut(s) 69, 168, 520, 525
FauI CCCGC 2 cut(s) 27, 271
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 196, 199, 498
Fsp4HI GCNGC 3 cut(s) 196, 199, 498
FspBI CTAG 1 cut(s) 140
FspI TGCGCA 1 cut(s) 77
GlaI GCGC 2 cut(s) 77, 296
GluI GCNGC 3 cut(s) 196, 199, 498
HaeIII GGCC 1 cut(s) 212
HapII CCGG 1 cut(s) 23
HhaI GCGC 2 cut(s) 78, 297
Hin1II CATG 4 cut(s) 73, 172, 524, 529
Hin6I GCGC 2 cut(s) 76, 295
HinP1I GCGC 2 cut(s) 76, 295
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 2 cut(s) 82, 98
HinfI GANTC 1 cut(s) 506
HpaII CCGG 1 cut(s) 23
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 3 cut(s) 109, 271, 433
Hpy188I TCNGA 1 cut(s) 378
Hpy8I GTNNAC 3 cut(s) 109, 271, 433
Hpy99I CGWCG 2 cut(s) 353, 356
HpyAV CCTTC 4 cut(s) 199, 229, 373, 410
HpyCH4IV ACGT 2 cut(s) 130, 354
HpyCH4V TGCA 1 cut(s) 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 335
HpyF3I CTNAG 2 cut(s) 49, 444
HpySE526I ACGT 2 cut(s) 130, 354
Hsp92II CATG 4 cut(s) 73, 172, 524, 529
HspAI GCGC 2 cut(s) 76, 295
Kzo9I GATC 2 cut(s) 472, 491
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 6 cut(s) 36, 129, 346, 413, 421, 440
Lsp1109I GCAGC 2 cut(s) 182, 484
LweI GCATC 1 cut(s) 111
MaeI CTAG 1 cut(s) 140
MaeII ACGT 2 cut(s) 130, 354
MaeIII GTNAC 1 cut(s) 223
MalI GATC 2 cut(s) 474, 493
MbiI CCGCTC 1 cut(s) 201
MboI GATC 2 cut(s) 472, 491
MboII GAAGA 2 cut(s) 58, 103
MflI RGATCY 1 cut(s) 472
MluCI AATT 1 cut(s) 38
MnlI CCTC 4 cut(s) 122, 176, 202, 439
MseI TTAA 1 cut(s) 456
MspA1I CMGCKG 2 cut(s) 195, 249
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 428
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 2 cut(s) 149, 335
NdeII GATC 2 cut(s) 472, 491
NheI GCTAGC 1 cut(s) 139
NlaIII CATG 4 cut(s) 73, 172, 524, 529
NmuCI GTSAC 1 cut(s) 223
NsbI TGCGCA 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 506
PkrI GCNGC 3 cut(s) 197, 200, 499
Ple19I CGATCG 1 cut(s) 494
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PspPI GGNCC 1 cut(s) 211
PsuI RGATCY 1 cut(s) 472
PvuI CGATCG 1 cut(s) 494
PvuII CAGCTG 2 cut(s) 195, 249
RsaI GTAC 3 cut(s) 54, 239, 341
RsaNI GTAC 3 cut(s) 53, 238, 340
SalI GTCGAC 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 3 cut(s) 196, 199, 498
Sau3AI GATC 2 cut(s) 472, 491
Sau96I GGNCC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 428
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 1 cut(s) 250
SmlI CTYRAG 2 cut(s) 386, 476
SmoI CTYRAG 2 cut(s) 386, 476
Sse9I AATT 1 cut(s) 38
SsiI CCGC 6 cut(s) 20, 186, 199, 264, 371, 410
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 426
TaiI ACGT 2 cut(s) 133, 357
TaqI TCGA 3 cut(s) 89, 108, 535
TasI AATT 1 cut(s) 38
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 195, 497
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 58, 272
TspRI CASTG 1 cut(s) 340
XcmI CCANNNNNNNNNTGG 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.