MD15G1195000.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012845
Physical Location & Seq
Forward (+)
15427462 .. 15428309
848 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1195000.v1.1.491

Sequence Viewer

Length: 531 bp
ATGGAAGTAGAACCAAGCCCGCCAGTTGTGGCAAAGAAATTGTGGAACTTAGTACGCATAATGTTCTTCATGTTGCGCAAAGGCTTATCCAAGAGCAAGCTTATTGTCGACCTCCATTTGATGCTCAAACGTGGCAAGCTAGCAAGCAAGGCAATAGCCAACAACCTCATGCTCCACCACACCTCCGCCTTCAGCTGCCGCTCAAACGACGCTGTCTCCTTCGTCACTCCCCGAGAGTACGAGTTCAGCTGCAGCAACAGCCCCGCCATTTACAACCCTTTTCATTTCAACAAGCGCAACAAACACCACCACCACTATTTTCCCAAATCAACCAGTGCGTACCAATACGACGACGTTAGCACTATGAGTGCAGTTCAGAAGGTGCTTGAGATGTTGAACAATGAGATGGCGGTGGAGGCCTCGCCGCTTGTGACATTGCCAGGGTTTGGGAAGAGCCCTATGGATCTCAAGTTGCAGAAACGATCGGCTGCCCTCGAATCTCCGTCCTACCGTGCCATGCGCGGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

177

Amino Acids

20.02

Weight (kDa)

9.89

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012845)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29110
fragaria_vesca FvH4_1g05960
malus_domestica MD02G1064200.v1.1 MD15G1195000.v1.1
prunus_persica Prupe.7G221500_v2.0.a1
pyrus_communis pycom02g05030 pycom15g17440
rosa_chinensis RchiOBHm_Chr2g0091581 RchiOBHm_Chr2g0091651
rosa_laevigata RLG00000016240
rosa_multiflora Rmu_sc0000897.1_g000013
rosa_roxburghii Rroxscaffold_2G00149850
rosa_rugosa Rorug02G0019200
rosa_samantha Rh2AG064400 Rh2BG063600 Rh2CG065300 Rh2DG063700
rosa_wichuraiana Rw2G005610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 77
AccB7I CCANNNNNTGG 1 cut(s) 446
AccBSI CCGCTC 1 cut(s) 201
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 522
AciI CCGC 7 cut(s) 20, 186, 199, 264, 410, 425, 522
AclWI GGATC 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 175
AfaI GTAC 3 cut(s) 54, 239, 341
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 2 cut(s) 289, 397
AjnI CCWGG 1 cut(s) 439
AluBI AGCT 4 cut(s) 100, 139, 195, 249
AluI AGCT 4 cut(s) 100, 139, 195, 249
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 1 cut(s) 471
Ama87I CYCGRG 1 cut(s) 231
AoxI GGCC 1 cut(s) 417
ApeKI GCWGC 4 cut(s) 195, 249, 252, 488
AspLEI GCGC 3 cut(s) 78, 297, 522
AsuNHI GCTAGC 1 cut(s) 139
AvaI CYCGRG 1 cut(s) 231
BanII GRGCYC 1 cut(s) 458
BbvI GCAGC 4 cut(s) 182, 236, 264, 475
BccI CCATC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 220
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 6 cut(s) 196, 199, 250, 253, 425, 489
BlsI GCNGC 6 cut(s) 197, 200, 251, 254, 426, 490
Bme1390I CCNGG 1 cut(s) 441
BmeT110I CYCGRG 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 441
BmsI GCATC 1 cut(s) 111
BmtI GCTAGC 1 cut(s) 143
BpuEI CTTGAG 2 cut(s) 407, 452
BsaJI CCNNGG 1 cut(s) 440
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse1I ACTGG 2 cut(s) 23, 333
Bse3DI GCAATG 1 cut(s) 434
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 440
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 1 cut(s) 434
BseNI ACTGG 2 cut(s) 23, 333
BseXI GCAGC 4 cut(s) 182, 236, 264, 475
BsgI GTGCAG 1 cut(s) 390
Bsh1236I CGCG 1 cut(s) 522
Bsh1285I CGRYCG 2 cut(s) 485, 526
BshFI GGCC 1 cut(s) 419
BsiEI CGRYCG 2 cut(s) 485, 526
BsiHKCI CYCGRG 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 1 cut(s) 220
BsnI GGCC 1 cut(s) 419
BsoBI CYCGRG 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 2 cut(s) 463, 482
BspACI CCGC 7 cut(s) 20, 186, 199, 264, 410, 425, 522
BspANI GGCC 1 cut(s) 419
BspFNI CGCG 1 cut(s) 522
BspMAI CTGCAG 1 cut(s) 254
BspOI GCTAGC 1 cut(s) 143
BspPI GGATC 1 cut(s) 471
BspQI GCTCTTC 1 cut(s) 446
BsrBI CCGCTC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 434
BsrI ACTGG 2 cut(s) 23, 333
BssECI CCNNGG 1 cut(s) 440
BssMI GATC 2 cut(s) 463, 482
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 1 cut(s) 512
Bst6I CTCTTC 1 cut(s) 446
BstC8I GCNNGC 5 cut(s) 20, 98, 137, 141, 145
BstDEI CTNAG 1 cut(s) 49
BstFNI CGCG 1 cut(s) 522
BstHHI GCGC 3 cut(s) 78, 297, 522
BstKTI GATC 2 cut(s) 466, 485
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 2 cut(s) 463, 482
BstMCI CGRYCG 2 cut(s) 485, 526
BstMWI GCNNNNNNNGC 3 cut(s) 149, 258, 416
BstNI CCWGG 1 cut(s) 441
BstSCI CCNGG 1 cut(s) 439
BstSFI CTRYAG 1 cut(s) 250
BstUI CGCG 1 cut(s) 522
BstV1I GCAGC 4 cut(s) 182, 236, 264, 475
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BsuRI GGCC 1 cut(s) 419
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 5 cut(s) 20, 98, 137, 141, 145
CfoI GCGC 3 cut(s) 78, 297, 522
CseI GACGC 1 cut(s) 218
Csp6I GTAC 3 cut(s) 53, 238, 340
CviAII CATG 3 cut(s) 70, 169, 517
CviQI GTAC 3 cut(s) 53, 238, 340
DdeI CTNAG 1 cut(s) 49
DpnI GATC 2 cut(s) 465, 484
DpnII GATC 2 cut(s) 463, 482
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
EciI GGCGGA 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 458
Eco57I CTGAAG 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 458
FaeI CATG 3 cut(s) 73, 172, 520
FaiI YATR 6 cut(s) 59, 71, 170, 365, 461, 518
FatI CATG 3 cut(s) 69, 168, 516
FauI CCCGC 2 cut(s) 27, 271
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 6 cut(s) 196, 199, 250, 253, 425, 489
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 6 cut(s) 196, 199, 250, 253, 425, 489
FspBI CTAG 1 cut(s) 140
FspI TGCGCA 1 cut(s) 77
GlaI GCGC 3 cut(s) 77, 296, 521
GluI GCNGC 6 cut(s) 196, 199, 250, 253, 425, 489
HaeIII GGCC 1 cut(s) 419
HgaI GACGC 1 cut(s) 218
HhaI GCGC 3 cut(s) 78, 297, 522
Hin1II CATG 3 cut(s) 73, 172, 520
Hin6I GCGC 3 cut(s) 76, 295, 520
HinP1I GCGC 3 cut(s) 76, 295, 520
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 1 cut(s) 497
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 378
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 3 cut(s) 212, 353, 356
HpyAV CCTTC 3 cut(s) 199, 229, 373
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4IV ACGT 2 cut(s) 130, 354
HpyCH4V TGCA 3 cut(s) 252, 371, 475
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 258, 416
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 2 cut(s) 130, 354
Hsp92II CATG 3 cut(s) 73, 172, 520
HspAI GCGC 3 cut(s) 76, 295, 520
Kzo9I GATC 2 cut(s) 463, 482
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 4 cut(s) 36, 346, 426, 453
Lsp1109I GCAGC 4 cut(s) 182, 236, 264, 475
LweI GCATC 1 cut(s) 111
MaeI CTAG 1 cut(s) 140
MaeII ACGT 2 cut(s) 130, 354
MaeIII GTNAC 2 cut(s) 223, 430
MalI GATC 2 cut(s) 465, 484
MbiI CCGCTC 1 cut(s) 201
MboI GATC 2 cut(s) 463, 482
MboII GAAGA 2 cut(s) 58, 463
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 1 cut(s) 38
MnlI CCTC 6 cut(s) 122, 176, 193, 409, 430, 503
MspA1I CMGCKG 2 cut(s) 195, 249
MspR9I CCNGG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 441
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 3 cut(s) 149, 258, 416
NdeII GATC 2 cut(s) 463, 482
NheI GCTAGC 1 cut(s) 139
NlaIII CATG 3 cut(s) 73, 172, 520
NmuCI GTSAC 2 cut(s) 223, 430
NsbI TGCGCA 1 cut(s) 77
PceI AGGCCT 1 cut(s) 419
PciSI GCTCTTC 1 cut(s) 446
PfeI GAWTC 1 cut(s) 497
PflFI GACNNNGTC 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 446
PkrI GCNGC 6 cut(s) 197, 200, 251, 254, 426, 490
Ple19I CGATCG 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 439
PstI CTGCAG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 463
PsyI GACNNNGTC 1 cut(s) 212
PvuI CGATCG 1 cut(s) 485
PvuII CAGCTG 2 cut(s) 195, 249
RsaI GTAC 3 cut(s) 54, 239, 341
RsaNI GTAC 3 cut(s) 53, 238, 340
SalI GTCGAC 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 446
SatI GCNGC 6 cut(s) 196, 199, 250, 253, 425, 489
Sau3AI GATC 2 cut(s) 463, 482
ScrFI CCNGG 1 cut(s) 441
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 1 cut(s) 250
SmlI CTYRAG 2 cut(s) 386, 467
SmoI CTYRAG 2 cut(s) 386, 467
Sse9I AATT 1 cut(s) 38
SseBI AGGCCT 1 cut(s) 419
SsiI CCGC 7 cut(s) 20, 186, 199, 264, 410, 425, 522
SspMI CTAG 1 cut(s) 140
StuI AGGCCT 1 cut(s) 419
StyD4I CCNGG 1 cut(s) 439
TaaI ACNGT 1 cut(s) 512
TaiI ACGT 2 cut(s) 133, 357
TaqI TCGA 3 cut(s) 108, 495, 526
TasI AATT 1 cut(s) 38
TauI GCSGC 2 cut(s) 201, 427
TfiI GAWTC 1 cut(s) 497
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 2 cut(s) 223, 430
TseI GCWGC 4 cut(s) 195, 249, 252, 488
Tsp45I GTSAC 2 cut(s) 223, 430
TspDTI ATGAA 2 cut(s) 58, 272
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 1 cut(s) 340
Tth111I GACNNNGTC 1 cut(s) 212
Van91I CCANNNNNTGG 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.