Rroxscaffold_2G00149850

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012845
Physical Location & Seq
Reverse (-)
87373503 .. 87374117
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00149850.1

Sequence Viewer

Length: 615 bp
ATGGAACCTAGTACGGATAGTGTTCTTCATGCTGCGAAAGGGCTTGACGAAAAGCAAGTTATTAGTCGACCTCCATTTGATGCTCAAGCGCGGCAAGCTAGCCAGCAAAGCCATCGCAAACAACCTCATCATGCTCCACCACTCCTCCAACTCCGCCTTCAGCTGCCGCTCGAACGACGCCGTTTCGTTCGTCACCCCCGTGAATATGAGTTTAGCTGCAGCAACAGCCCCGCCACCCACAACCCTTTCCTTTTCCACCACAAGCGCAACAAGCACCACCACCACGGATACTTTGCGAAAAATACTTCTGCCACAGCCTCCGCGTATCAATACGATGATGTGAGCACCGCGGCGGCGGTGCAGAGGGTTCTTGAGATGCTGAACAATGAGATGGTGGCGGAGGCGTCGCCAATGGTAACGCTGCCAGGGTTCGGGAAGAGCCCGATGGTGAGGCAGCTGAGGATAACGGACTCGCCGTTTCCGATGAAGGAAGAGGGAGATAGCCAGGTAGACAAGGAAGCTGAGGAATTTATTAAGAAGTTCTATAAAGACCTCAAGTTGCAGAAAAGGACATCTGCTCTTGAATCACCATACCGTGCTTTGCGAAGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

204

Amino Acids

23.47

Weight (kDa)

9.64

Isoelectric Point (pI)

71.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 168 - 194 4e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012845)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29110
fragaria_vesca FvH4_1g05960
malus_domestica MD02G1064200.v1.1 MD15G1195000.v1.1
prunus_persica Prupe.7G221500_v2.0.a1
pyrus_communis pycom02g05030 pycom15g17440
rosa_chinensis RchiOBHm_Chr2g0091581 RchiOBHm_Chr2g0091651
rosa_laevigata RLG00000016240
rosa_multiflora Rmu_sc0000897.1_g000013
rosa_roxburghii Rroxscaffold_2G00149850
rosa_rugosa Rorug02G0019200
rosa_samantha Rh2AG064400 Rh2BG063600 Rh2CG065300 Rh2DG063700
rosa_wichuraiana Rw2G005610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 169
AccI GTMKAC 2 cut(s) 67, 510
AccII CGCG 3 cut(s) 91, 323, 350
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 1 cut(s) 143
AcyI GRCGYC 2 cut(s) 178, 404
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 1 cut(s) 584
AjnI CCWGG 2 cut(s) 424, 504
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 5 cut(s) 98, 163, 216, 457, 521
AluI AGCT 5 cut(s) 98, 163, 216, 457, 521
Alw21I GWGCWC 1 cut(s) 347
ApeKI GCWGC 6 cut(s) 32, 163, 216, 219, 421, 454
ApoI RAATTY 1 cut(s) 527
AspLEI GCGC 2 cut(s) 91, 267
AsuHPI GGTGA 3 cut(s) 185, 460, 579
AsuNHI GCTAGC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 347
BbvCI CCTCAGC 2 cut(s) 458, 522
BbvI GCAGC 6 cut(s) 19, 150, 203, 231, 408, 466
BccI CCATC 3 cut(s) 120, 385, 439
BceAI ACGGC 2 cut(s) 165, 460
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BciT130I CCWGG 2 cut(s) 426, 506
BciVI GTATCC 1 cut(s) 281
BfaI CTAG 2 cut(s) 9, 99
BfmI CTRYAG 1 cut(s) 217
BfuI GTATCC 1 cut(s) 281
Bme1390I CCNGG 2 cut(s) 426, 506
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 426, 506
BmsI GCATC 2 cut(s) 70, 366
BmtI GCTAGC 1 cut(s) 102
Bpu10I CCTNAGC 2 cut(s) 458, 522
BpuEI CTTGAG 3 cut(s) 69, 392, 539
BsaHI GRCGYC 2 cut(s) 178, 404
BsaJI CCNNGG 3 cut(s) 283, 348, 425
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 431
BseBI CCWGG 2 cut(s) 426, 506
BseDI CCNNGG 3 cut(s) 283, 348, 425
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMII CTCAG 2 cut(s) 449, 513
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 6 cut(s) 19, 150, 203, 231, 408, 466
BsgI GTGCAG 1 cut(s) 380
Bsh1236I CGCG 3 cut(s) 91, 323, 350
BsiHKAI GWGCWC 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 431
Bsp1286I GDGCHC 2 cut(s) 347, 443
BspCNI CTCAG 2 cut(s) 450, 514
BspFNI CGCG 3 cut(s) 91, 323, 350
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 221
BspOI GCTAGC 1 cut(s) 102
BspQI GCTCTTC 1 cut(s) 431
BsrBI CCGCTC 1 cut(s) 169
BssECI CCNNGG 3 cut(s) 283, 348, 425
BssNI GRCGYC 2 cut(s) 178, 404
Bst2UI CCWGG 2 cut(s) 426, 506
Bst4CI ACNGT 1 cut(s) 596
Bst6I CTCTTC 2 cut(s) 431, 486
BstACI GRCGYC 2 cut(s) 178, 404
BstC8I GCNNGC 3 cut(s) 96, 100, 104
BstDEI CTNAG 2 cut(s) 458, 522
BstDSI CCRYGG 2 cut(s) 283, 348
BstFNI CGCG 3 cut(s) 91, 323, 350
BstHHI GCGC 2 cut(s) 91, 267
BstMWI GCNNNNNNNGC 4 cut(s) 95, 108, 225, 271
BstNI CCWGG 2 cut(s) 426, 506
BstSCI CCNGG 2 cut(s) 424, 504
BstSFI CTRYAG 1 cut(s) 217
BstUI CGCG 3 cut(s) 91, 323, 350
BstV1I GCAGC 6 cut(s) 19, 150, 203, 231, 408, 466
BsuI GTATCC 1 cut(s) 281
BtgI CCRYGG 2 cut(s) 283, 348
BtgZI GCGATG 1 cut(s) 98
Cac8I GCNNGC 3 cut(s) 96, 100, 104
CfoI GCGC 2 cut(s) 91, 267
Cfr42I CCGCGG 1 cut(s) 351
CseI GACGC 2 cut(s) 186, 393
Csp6I GTAC 1 cut(s) 12
CviAII CATG 2 cut(s) 29, 131
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 458, 522
Eam1104I CTCTTC 2 cut(s) 431, 486
EarI CTCTTC 2 cut(s) 431, 486
EciI GGCGGA 2 cut(s) 143, 413
Eco24I GRGCYC 1 cut(s) 443
Eco57I CTGAAG 1 cut(s) 143
EcoRII CCWGG 2 cut(s) 424, 504
EcoT38I GRGCYC 1 cut(s) 443
FaeI CATG 2 cut(s) 32, 134
FaiI YATR 5 cut(s) 30, 132, 207, 546, 592
FatI CATG 2 cut(s) 28, 130
FauI CCCGC 1 cut(s) 238
FblI GTMKAC 2 cut(s) 67, 510
FriOI GRGCYC 1 cut(s) 443
FspBI CTAG 2 cut(s) 9, 99
GlaI GCGC 2 cut(s) 90, 266
HgaI GACGC 2 cut(s) 186, 393
HhaI GCGC 2 cut(s) 91, 267
Hin1I GRCGYC 2 cut(s) 178, 404
Hin1II CATG 2 cut(s) 32, 134
Hin6I GCGC 2 cut(s) 89, 265
HinP1I GCGC 2 cut(s) 89, 265
HincII GTYRAC 1 cut(s) 68
HindII GTYRAC 1 cut(s) 68
HinfI GANTC 2 cut(s) 470, 584
HphI GGTGA 3 cut(s) 185, 460, 579
Hpy166II GTNNAC 2 cut(s) 68, 511
Hpy188I TCNGA 1 cut(s) 483
Hpy188III TCNNGA 3 cut(s) 371, 433, 581
Hpy8I GTNNAC 2 cut(s) 68, 511
Hpy99I CGWCG 2 cut(s) 180, 409
HpyAV CCTTC 2 cut(s) 167, 481
HpyCH4III ACNGT 1 cut(s) 596
HpyCH4V TGCA 3 cut(s) 219, 361, 562
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 108, 225, 271
HpyF3I CTNAG 2 cut(s) 458, 522
Hsp92I GRCGYC 2 cut(s) 178, 404
Hsp92II CATG 2 cut(s) 32, 134
HspAI GCGC 2 cut(s) 89, 265
KspI CCGCGG 1 cut(s) 351
LguI GCTCTTC 1 cut(s) 431
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 5 cut(s) 116, 411, 438, 491, 518
Lsp1109I GCAGC 6 cut(s) 19, 150, 203, 231, 408, 466
LweI GCATC 2 cut(s) 70, 366
MaeI CTAG 2 cut(s) 9, 99
MaeIII GTNAC 2 cut(s) 191, 415
MbiI CCGCTC 1 cut(s) 169
MboII GAAGA 3 cut(s) 17, 448, 503
MhlI GDGCHC 2 cut(s) 347, 443
MluCI AATT 1 cut(s) 527
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 1 cut(s) 172
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 1 cut(s) 198
MspA1I CMGCKG 3 cut(s) 163, 350, 457
MspR9I CCNGG 2 cut(s) 426, 506
MvaI CCWGG 2 cut(s) 426, 506
MvnI CGCG 3 cut(s) 91, 323, 350
MwoI GCNNNNNNNGC 4 cut(s) 95, 108, 225, 271
NheI GCTAGC 1 cut(s) 98
NlaIII CATG 2 cut(s) 32, 134
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 191
OliI CACNNNNGTG 1 cut(s) 198
PciSI GCTCTTC 1 cut(s) 431
PcsI WCGNNNNNNNCGW 3 cut(s) 196, 473, 479
PfeI GAWTC 1 cut(s) 584
PleI GAGTC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 464
Psp6I CCWGG 2 cut(s) 424, 504
PspGI CCWGG 2 cut(s) 424, 504
PspN4I GGNNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 221
PvuII CAGCTG 2 cut(s) 163, 457
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 198
SacII CCGCGG 1 cut(s) 351
SalI GTCGAC 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 431
SaqAI TTAA 1 cut(s) 534
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 2 cut(s) 426, 506
SduI GDGCHC 2 cut(s) 347, 443
SfaNI GCATC 2 cut(s) 70, 366
SfcI CTRYAG 1 cut(s) 217
Sfr303I CCGCGG 1 cut(s) 351
SgrBI CCGCGG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 3 cut(s) 84, 371, 554
SmoI CTYRAG 3 cut(s) 84, 371, 554
Sse9I AATT 1 cut(s) 527
SspMI CTAG 2 cut(s) 9, 99
StyD4I CCNGG 2 cut(s) 424, 504
TaaI ACNGT 1 cut(s) 596
TaqI TCGA 3 cut(s) 67, 171, 610
TasI AATT 1 cut(s) 527
TauI GCSGC 4 cut(s) 94, 169, 353, 356
TfiI GAWTC 1 cut(s) 584
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 6 cut(s) 32, 163, 216, 219, 421, 454
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 17, 500
TspGWI ACGGA 3 cut(s) 29, 300, 482
XapI RAATTY 1 cut(s) 527
XmiI GTMKAC 2 cut(s) 67, 510
XspI CTAG 2 cut(s) 9, 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.