RLG00000016240

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012845
Physical Location & Seq
Forward (+)
4997830 .. 4998495
666 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016240

Sequence Viewer

Length: 666 bp
ATGGAAGTGGAACCAAGCCCGCCTGTGGTGGCCAAGAAGCTATGGAACCTAGTACGGATAGTGTTCTTCATGTTGCGAAAGGGCTTGACGAAAAGCAAGTTATTAGTCGACCTCCATTTGATGCTCAAGCGCGGCAAGCTAGCCAGCAAAGCCATCGCAAACAACCTCATCATGCTCCACCACTCCTCCAACTCCGCCTTCAGCTGCCGCTCGAACGATGCCGTTTCGTTCGTCACCCCCCGTGAATATGAGTTCAGCTGCAGCAACAGCCCCGCCACCCACAACCCTTTCCTTTTCCACCACAAGCGCAACAAGCACCACCACCACCACCACCACGGATACTTTGCGAAAAATACTTCTGCCACAGCCGCCGCGTATCAATACGATGATGTGAGCACCACGGCGGCTGTGCAGAGGGTTCTTGAGATGCTGAACAACGAGATGGTGGCGGAGGCGTCGCCAATGGTGACGCTGCCAGGGTTCGGGAAGAGCCCGATGGTGAGGCAGCTGAGGATAACGGACTCGCCGTTTCCGATGAAGGAAGAGGGAGATAGCCAGGTAGACAAGGAAGCTGAGGAATTTATTAAGAAGTTCTATAAAGACCTCAAGTTGCAGAAAAGGACATCTGCTCTTGAATCACCATACCGTGCTTTGAGAAGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

222

Amino Acids

25.21

Weight (kDa)

9.69

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 185 - 211 4.5e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012845)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29110
fragaria_vesca FvH4_1g05960
malus_domestica MD02G1064200.v1.1 MD15G1195000.v1.1
prunus_persica Prupe.7G221500_v2.0.a1
pyrus_communis pycom02g05030 pycom15g17440
rosa_chinensis RchiOBHm_Chr2g0091581 RchiOBHm_Chr2g0091651
rosa_laevigata RLG00000016240
rosa_multiflora Rmu_sc0000897.1_g000013
rosa_roxburghii Rroxscaffold_2G00149850
rosa_rugosa Rorug02G0019200
rosa_samantha Rh2AG064400 Rh2BG063600 Rh2CG065300 Rh2DG063700
rosa_wichuraiana Rw2G005610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 210
AccI GTMKAC 2 cut(s) 108, 561
AccII CGCG 2 cut(s) 132, 374
AciI CCGC 9 cut(s) 20, 132, 195, 208, 273, 369, 372, 404, 449
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 578
AcuI CTGAAG 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 455
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 25, 482
AgsI TTSAA 1 cut(s) 635
AjnI CCWGG 2 cut(s) 475, 555
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 6 cut(s) 40, 139, 204, 258, 508, 572
AluI AGCT 6 cut(s) 40, 139, 204, 258, 508, 572
Alw21I GWGCWC 1 cut(s) 398
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 5 cut(s) 204, 258, 261, 472, 505
ApoI RAATTY 1 cut(s) 578
AspLEI GCGC 2 cut(s) 132, 309
AsuHPI GGTGA 4 cut(s) 226, 478, 511, 630
AsuNHI GCTAGC 1 cut(s) 139
BalI TGGCCA 1 cut(s) 32
BanII GRGCYC 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 398
BbvCI CCTCAGC 2 cut(s) 509, 573
BbvI GCAGC 5 cut(s) 191, 245, 273, 459, 517
BccI CCATC 3 cut(s) 161, 436, 490
BceAI ACGGC 3 cut(s) 206, 417, 511
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 2 cut(s) 477, 557
BciVI GTATCC 1 cut(s) 332
BfaI CTAG 2 cut(s) 50, 140
BfmI CTRYAG 1 cut(s) 259
BfuI GTATCC 1 cut(s) 332
Bme1390I CCNGG 2 cut(s) 477, 557
BmiI GGNNCC 2 cut(s) 12, 47
BmrFI CCNGG 2 cut(s) 477, 557
BmsI GCATC 3 cut(s) 111, 208, 417
BmtI GCTAGC 1 cut(s) 143
Bpu10I CCTNAGC 2 cut(s) 509, 573
BpuEI CTTGAG 3 cut(s) 110, 443, 590
BsaHI GRCGYC 1 cut(s) 455
BsaJI CCNNGG 3 cut(s) 334, 399, 476
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 482
BseBI CCWGG 2 cut(s) 477, 557
BseDI CCNNGG 3 cut(s) 334, 399, 476
BseLI CCNNNNNNNGG 2 cut(s) 25, 482
BseMII CTCAG 2 cut(s) 500, 564
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 5 cut(s) 191, 245, 273, 459, 517
BsgI GTGCAG 1 cut(s) 431
Bsh1236I CGCG 2 cut(s) 132, 374
BshFI GGCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 25, 482
BsnI GGCC 1 cut(s) 32
Bsp1286I GDGCHC 2 cut(s) 398, 494
BspACI CCGC 9 cut(s) 20, 132, 195, 208, 273, 369, 372, 404, 449
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 501, 565
BspFNI CGCG 2 cut(s) 132, 374
BspLI GGNNCC 2 cut(s) 12, 47
BspMAI CTGCAG 1 cut(s) 263
BspOI GCTAGC 1 cut(s) 143
BspQI GCTCTTC 1 cut(s) 482
BsrBI CCGCTC 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 334, 399, 476
BssNI GRCGYC 1 cut(s) 455
Bst2UI CCWGG 2 cut(s) 477, 557
Bst4CI ACNGT 1 cut(s) 647
Bst6I CTCTTC 2 cut(s) 482, 537
BstACI GRCGYC 1 cut(s) 455
BstC8I GCNNGC 4 cut(s) 20, 137, 141, 145
BstDEI CTNAG 2 cut(s) 509, 573
BstDSI CCRYGG 2 cut(s) 334, 399
BstFNI CGCG 2 cut(s) 132, 374
BstHHI GCGC 2 cut(s) 132, 309
BstMWI GCNNNNNNNGC 5 cut(s) 136, 149, 267, 313, 368
BstNI CCWGG 2 cut(s) 477, 557
BstSCI CCNGG 2 cut(s) 475, 555
BstSFI CTRYAG 1 cut(s) 259
BstUI CGCG 2 cut(s) 132, 374
BstV1I GCAGC 5 cut(s) 191, 245, 273, 459, 517
BsuI GTATCC 1 cut(s) 332
BsuRI GGCC 1 cut(s) 32
BtgI CCRYGG 2 cut(s) 334, 399
BtgZI GCGATG 1 cut(s) 139
Cac8I GCNNGC 4 cut(s) 20, 137, 141, 145
CfoI GCGC 2 cut(s) 132, 309
CseI GACGC 2 cut(s) 444, 478
Csp6I GTAC 1 cut(s) 53
CviAII CATG 2 cut(s) 70, 172
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 2 cut(s) 509, 573
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 482, 537
EarI CTCTTC 2 cut(s) 482, 537
EciI GGCGGA 2 cut(s) 184, 464
Eco24I GRGCYC 1 cut(s) 494
Eco57I CTGAAG 1 cut(s) 184
EcoRII CCWGG 2 cut(s) 475, 555
EcoT38I GRGCYC 1 cut(s) 494
FaeI CATG 2 cut(s) 73, 175
FaiI YATR 6 cut(s) 43, 71, 173, 249, 597, 643
FatI CATG 2 cut(s) 69, 171
FauI CCCGC 2 cut(s) 27, 280
FblI GTMKAC 2 cut(s) 108, 561
FriOI GRGCYC 1 cut(s) 494
FspBI CTAG 2 cut(s) 50, 140
GlaI GCGC 2 cut(s) 131, 308
HaeIII GGCC 1 cut(s) 32
HgaI GACGC 2 cut(s) 444, 478
HhaI GCGC 2 cut(s) 132, 309
Hin1I GRCGYC 1 cut(s) 455
Hin1II CATG 2 cut(s) 73, 175
Hin6I GCGC 2 cut(s) 130, 307
HinP1I GCGC 2 cut(s) 130, 307
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 2 cut(s) 521, 635
HphI GGTGA 4 cut(s) 226, 478, 511, 630
Hpy166II GTNNAC 2 cut(s) 109, 562
Hpy188I TCNGA 1 cut(s) 534
Hpy188III TCNNGA 3 cut(s) 422, 484, 632
Hpy8I GTNNAC 2 cut(s) 109, 562
Hpy99I CGWCG 1 cut(s) 460
HpyAV CCTTC 2 cut(s) 208, 532
HpyCH4III ACNGT 1 cut(s) 647
HpyCH4V TGCA 3 cut(s) 261, 412, 613
HpyF10VI GCNNNNNNNGC 5 cut(s) 136, 149, 267, 313, 368
HpyF3I CTNAG 2 cut(s) 509, 573
Hsp92I GRCGYC 1 cut(s) 455
Hsp92II CATG 2 cut(s) 73, 175
HspAI GCGC 2 cut(s) 130, 307
LguI GCTCTTC 1 cut(s) 482
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 6 cut(s) 36, 157, 462, 489, 542, 569
Lsp1109I GCAGC 5 cut(s) 191, 245, 273, 459, 517
LweI GCATC 3 cut(s) 111, 208, 417
MaeI CTAG 2 cut(s) 50, 140
MaeIII GTNAC 2 cut(s) 232, 466
MbiI CCGCTC 1 cut(s) 210
MboII GAAGA 3 cut(s) 58, 499, 554
MhlI GDGCHC 2 cut(s) 398, 494
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 1 cut(s) 578
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 213
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 1 cut(s) 585
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 3 cut(s) 204, 258, 508
MspR9I CCNGG 2 cut(s) 477, 557
MvaI CCWGG 2 cut(s) 477, 557
MvnI CGCG 2 cut(s) 132, 374
MwoI GCNNNNNNNGC 5 cut(s) 136, 149, 267, 313, 368
NheI GCTAGC 1 cut(s) 139
NlaIII CATG 2 cut(s) 73, 175
NlaIV GGNNCC 2 cut(s) 12, 47
NmuCI GTSAC 2 cut(s) 232, 466
PciSI GCTCTTC 1 cut(s) 482
PcsI WCGNNNNNNNCGW 2 cut(s) 524, 530
PfeI GAWTC 1 cut(s) 635
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
Psp6I CCWGG 2 cut(s) 475, 555
PspGI CCWGG 2 cut(s) 475, 555
PspN4I GGNNCC 2 cut(s) 12, 47
PstI CTGCAG 1 cut(s) 263
PvuII CAGCTG 3 cut(s) 204, 258, 508
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SalI GTCGAC 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 482
SaqAI TTAA 1 cut(s) 585
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 2 cut(s) 477, 557
SduI GDGCHC 2 cut(s) 398, 494
SfaNI GCATC 3 cut(s) 111, 208, 417
SfcI CTRYAG 1 cut(s) 259
SmlI CTYRAG 3 cut(s) 125, 422, 605
SmoI CTYRAG 3 cut(s) 125, 422, 605
Sse9I AATT 1 cut(s) 578
SsiI CCGC 9 cut(s) 20, 132, 195, 208, 273, 369, 372, 404, 449
SspMI CTAG 2 cut(s) 50, 140
StyD4I CCNGG 2 cut(s) 475, 555
TaaI ACNGT 1 cut(s) 647
TaqI TCGA 3 cut(s) 108, 212, 661
TasI AATT 1 cut(s) 578
TauI GCSGC 5 cut(s) 135, 210, 371, 374, 407
TfiI GAWTC 1 cut(s) 635
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TseFI GTSAC 2 cut(s) 232, 466
TseI GCWGC 5 cut(s) 204, 258, 261, 472, 505
Tsp45I GTSAC 2 cut(s) 232, 466
TspDTI ATGAA 2 cut(s) 58, 551
TspGWI ACGGA 3 cut(s) 70, 351, 533
XapI RAATTY 1 cut(s) 578
XmiI GTMKAC 2 cut(s) 108, 561
XspI CTAG 2 cut(s) 50, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.