AT4G30840

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011206
Physical Location & Seq
Reverse (-)
15017472 .. 15019771
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30840.1

Sequence Viewer

Length: 1086 bp
ATGGAGATGATGCAGGATTCGTTCCAAGTCCATAGGATTCCACAATCGAAGTATGTCGATGGAGTTAGATGGCTTCCACAAGCTTCTGCTTTGAATCGTTTCTTCGCAACAGCGTCCTATGACGCGGATTGTGATTCTTCATCAATCGAGATCCAATCGCTCGACCCAAACCCTAGAGGGAATCACAACACGAACCCGTTAATCGAGTCGTTATCTTCATGGACTTCACCTTCTCGCGTTTCGTCTCTAGAAGTCGCGGGAAACGGCGGTGGTGGCGGTTCATTCAAACCAATGGTTTCAGCAGCTACGTCTTCTGGTTCTCTTCACGTTCTGATGATTGATTTGGTGGAAGGAGCTGCGATTGAAGAGTTTTACGCGGCGGAAGGGGAGAGGTTTCATGTGGGACGCGTGGAAGGTGTGGATTGGAGAGAGGGAGGAGAATGTGTTACTGTTGGTGAAGATGGGAGAGTGAATGTAGTGAAGATTGTGAATGGTGAAGGTTTAAGGTATAGAAAGGTCTTTGATGGGAATGGATTGGTGGCTTATAGAGCTGTGAAATGGGCTTCTCCGACTGAGTTTGTTACTGGAGGATATGGTTTTGGTTTGCAATTGTGGGATCAGAGGAAGTCTGGTGAAGCTGTTTCACAACTCAAAGGGAACTGGTTTCAAGGCAAAACTTCTGCAATTGTCCACTCCATTGACATTCATCCATCTCGGAAGCACACTTGCATTGCAGGAGGTTCTTCAGGTACTGTATTTGCTTGGGATCTTCGGTGGCCACAGCAACCCATTGTTCTTTCTGGGGTTGGAGCAAGTGAGAATATAAACAATCCTCTGTCTGAAAGTGAGGTATGGGAAGTTCAGTATGACTCATACACAAAATCCAACGTCTCATCCTCAAGGATTCTCCCTGTTATGACCTGCTCTGAAGATGGAATCCTTGGTATCATAGAACAAGGGGAAGAACCAATCGAGCTTCTGGCTGAACCTTGTGCCATTAACAGTTTTGACATCGACAGGCAAAATCCACAGGATGTGATATGTAGCTTGGAGTGGGAATCAATAGCAGTTTTCTCAAGGCCTTAG

Protein Analysis

361

Amino Acids

39.35

Weight (kDa)

4.8

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30840
fragaria_vesca FvH4_4g09770 FvH4_4g09770 FvH4_4g09770
malus_domestica MD10G1281400.v1.1
prunus_persica Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1
pyrus_communis pycom10g23530
rosa_chinensis RchiOBHm_Chr4g0405491
rosa_laevigata RLG00000008840
rosa_multiflora Rmu_co8147422.1_g000001
rosa_roxburghii Rroxscaffold_5G00349930
rosa_rugosa Rorug04G0060500 Rorug04G0060600
rosa_samantha Rh4AG132200 Rh4BG127000 Rh4CG139700 Rh4DG126300
rosa_wichuraiana Rw4G010700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 929
AccII CGCG 5 cut(s) 125, 237, 257, 377, 408
AciI CCGC 6 cut(s) 125, 257, 267, 276, 377, 380
AclWI GGATC 3 cut(s) 145, 624, 774
AcoI YGGCCR 1 cut(s) 776
AcuI CTGAAG 2 cut(s) 729, 948
AfaI GTAC 1 cut(s) 751
AflIII ACRYGT 1 cut(s) 406
AgsI TTSAA 4 cut(s) 94, 286, 365, 668
AluBI AGCT 7 cut(s) 83, 305, 356, 551, 638, 976, 1047
AluI AGCT 7 cut(s) 83, 305, 356, 551, 638, 976, 1047
Alw26I GTCTC 2 cut(s) 249, 895
AlwI GGATC 3 cut(s) 145, 624, 774
AlwNI CAGNNNCTG 1 cut(s) 752
AoxI GGCC 2 cut(s) 776, 1079
ApeKI GCWGC 2 cut(s) 302, 356
Asp700I GAANNNNTTC 1 cut(s) 98
AsuHPI GGTGA 4 cut(s) 219, 467, 506, 644
BalI TGGCCA 1 cut(s) 778
BbsI GAAGAC 1 cut(s) 303
BbvI GCAGC 2 cut(s) 314, 343
BccI CCATC 6 cut(s) 53, 63, 455, 518, 718, 926
BceAI ACGGC 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 249, 895
BfaI CTAG 2 cut(s) 174, 248
BfuAI ACCTGC 1 cut(s) 929
BisI GCNGC 3 cut(s) 303, 357, 378
BlsI GCNGC 3 cut(s) 304, 358, 379
BpiI GAAGAC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 606
BpuEI CTTGAG 2 cut(s) 883, 1060
BsaJI CCNNGG 1 cut(s) 940
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bse1I ACTGG 2 cut(s) 589, 665
Bse3DI GCAATG 1 cut(s) 729
BseDI CCNNGG 1 cut(s) 940
BseGI GGATG 3 cut(s) 706, 893, 1039
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 2 cut(s) 589, 665
BseRI GAGGAG 1 cut(s) 450
BseXI GCAGC 2 cut(s) 314, 343
Bsh1236I CGCG 5 cut(s) 125, 237, 257, 377, 408
BshFI GGCC 2 cut(s) 778, 1081
BslFI GGGAC 1 cut(s) 417
BsmAI GTCTC 2 cut(s) 249, 895
BsmBI CGTCTC 2 cut(s) 249, 895
BsmFI GGGAC 1 cut(s) 417
BsnI GGCC 2 cut(s) 778, 1081
Bsp143I GATC 3 cut(s) 150, 616, 766
BspACI CCGC 6 cut(s) 125, 257, 267, 276, 377, 380
BspANI GGCC 2 cut(s) 778, 1081
BspCNI CTCAG 1 cut(s) 565
BspFNI CGCG 5 cut(s) 125, 237, 257, 377, 408
BspMI ACCTGC 1 cut(s) 929
BspPI GGATC 3 cut(s) 145, 624, 774
BsrDI GCAATG 1 cut(s) 729
BsrI ACTGG 2 cut(s) 589, 665
BssECI CCNNGG 1 cut(s) 940
BssMI GATC 3 cut(s) 150, 616, 766
BssT1I CCWWGG 1 cut(s) 940
Bst4CI ACNGT 3 cut(s) 451, 754, 1004
Bst6I CTCTTC 2 cut(s) 327, 360
BstDEI CTNAG 2 cut(s) 573, 1083
BstF5I GGATG 3 cut(s) 706, 893, 1039
BstFNI CGCG 5 cut(s) 125, 237, 257, 377, 408
BstKTI GATC 3 cut(s) 153, 619, 769
BstMAI GTCTC 2 cut(s) 249, 895
BstMBI GATC 3 cut(s) 150, 616, 766
BstMWI GCNNNNNNNGC 2 cut(s) 273, 548
BstUI CGCG 5 cut(s) 125, 237, 257, 377, 408
BstV1I GCAGC 2 cut(s) 314, 343
BstV2I GAAGAC 1 cut(s) 303
BstX2I RGATCY 2 cut(s) 150, 766
BstYI RGATCY 2 cut(s) 150, 766
BsuRI GGCC 2 cut(s) 778, 1081
BtsCI GGATG 3 cut(s) 706, 893, 1039
BveI ACCTGC 1 cut(s) 929
CaiI CAGNNNCTG 1 cut(s) 752
CseI GACGC 3 cut(s) 102, 131, 414
Csp6I GTAC 1 cut(s) 750
CviAII CATG 2 cut(s) 219, 398
CviQI GTAC 1 cut(s) 750
DdeI CTNAG 2 cut(s) 573, 1083
DpnI GATC 3 cut(s) 152, 618, 768
DpnII GATC 3 cut(s) 150, 616, 766
EaeI YGGCCR 1 cut(s) 776
Eam1104I CTCTTC 2 cut(s) 327, 360
EarI CTCTTC 2 cut(s) 327, 360
EciI GGCGGA 1 cut(s) 395
Eco130I CCWWGG 1 cut(s) 940
Eco147I AGGCCT 1 cut(s) 1081
Eco57I CTGAAG 2 cut(s) 729, 948
EcoT14I CCWWGG 1 cut(s) 940
ErhI CCWWGG 1 cut(s) 940
Esp3I CGTCTC 2 cut(s) 249, 895
FaeI CATG 2 cut(s) 222, 401
FaqI GGGAC 1 cut(s) 417
FatI CATG 2 cut(s) 218, 397
FauI CCCGC 1 cut(s) 250
Fnu4HI GCNGC 3 cut(s) 303, 357, 378
FokI GGATG 3 cut(s) 693, 880, 1046
Fsp4HI GCNGC 3 cut(s) 303, 357, 378
FspBI CTAG 2 cut(s) 174, 248
GluI GCNGC 3 cut(s) 303, 357, 378
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 2 cut(s) 778, 1081
HgaI GACGC 3 cut(s) 102, 131, 414
Hin1II CATG 2 cut(s) 222, 401
HindIII AAGCTT 1 cut(s) 81
HphI GGTGA 4 cut(s) 219, 467, 506, 644
Hpy166II GTNNAC 1 cut(s) 691
Hpy188I TCNGA 6 cut(s) 333, 570, 621, 717, 841, 928
Hpy188III TCNNGA 2 cut(s) 148, 248
Hpy8I GTNNAC 1 cut(s) 691
HpyAV CCTTC 5 cut(s) 240, 344, 377, 407, 491
HpyCH4III ACNGT 3 cut(s) 451, 754, 1004
HpyCH4IV ACGT 3 cut(s) 308, 327, 888
HpyCH4V TGCA 5 cut(s) 13, 607, 683, 729, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 273, 548
HpyF3I CTNAG 2 cut(s) 573, 1083
HpySE526I ACGT 3 cut(s) 308, 327, 888
Hsp92II CATG 2 cut(s) 222, 401
Kzo9I GATC 3 cut(s) 150, 616, 766
LmnI GCTCC 2 cut(s) 353, 809
Lsp1109I GCAGC 2 cut(s) 314, 343
MaeI CTAG 2 cut(s) 174, 248
MaeII ACGT 3 cut(s) 308, 327, 888
MaeIII GTNAC 2 cut(s) 445, 580
MalI GATC 3 cut(s) 152, 618, 768
MboI GATC 3 cut(s) 150, 616, 766
MfeI CAATTG 2 cut(s) 608, 684
MflI RGATCY 2 cut(s) 150, 766
MlsI TGGCCA 1 cut(s) 778
MluCI AATT 2 cut(s) 608, 684
MluI ACGCGT 1 cut(s) 406
MluNI TGGCCA 1 cut(s) 778
MlyI GAGTC 2 cut(s) 215, 863
MmeI TCCRAC 3 cut(s) 593, 787, 909
Mox20I TGGCCA 1 cut(s) 778
MroXI GAANNNNTTC 1 cut(s) 98
MscI TGGCCA 1 cut(s) 778
MseI TTAA 3 cut(s) 200, 503, 999
Msp20I TGGCCA 1 cut(s) 778
MunI CAATTG 2 cut(s) 608, 684
MvnI CGCG 5 cut(s) 125, 237, 257, 377, 408
MwoI GCNNNNNNNGC 2 cut(s) 273, 548
NdeII GATC 3 cut(s) 150, 616, 766
NlaIII CATG 2 cut(s) 222, 401
PceI AGGCCT 1 cut(s) 1081
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 8 cut(s) 17, 37, 94, 134, 181, 904, 936, 1058
PkrI GCNGC 3 cut(s) 304, 358, 379
PleI GAGTC 2 cut(s) 214, 863
PpsI GAGTC 2 cut(s) 214, 863
PsrI GAACNNNNNNTAC 2 cut(s) 843, 875
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 2 cut(s) 150, 766
RsaI GTAC 1 cut(s) 751
RsaNI GTAC 1 cut(s) 750
SaqAI TTAA 3 cut(s) 200, 503, 999
SatI GCNGC 3 cut(s) 303, 357, 378
Sau3AI GATC 3 cut(s) 150, 616, 766
SchI GAGTC 2 cut(s) 215, 863
SmlI CTYRAG 2 cut(s) 898, 1075
SmoI CTYRAG 2 cut(s) 898, 1075
Sse9I AATT 2 cut(s) 608, 684
SseBI AGGCCT 1 cut(s) 1081
SsiI CCGC 6 cut(s) 125, 257, 267, 276, 377, 380
SspMI CTAG 2 cut(s) 174, 248
StuI AGGCCT 1 cut(s) 1081
StyI CCWWGG 1 cut(s) 940
TaaI ACNGT 3 cut(s) 451, 754, 1004
TaiI ACGT 3 cut(s) 311, 330, 891
TaqI TCGA 7 cut(s) 47, 57, 147, 162, 204, 972, 1014
TasI AATT 2 cut(s) 608, 684
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 8 cut(s) 17, 37, 94, 134, 181, 904, 936, 1058
Tru1I TTAA 3 cut(s) 200, 503, 999
Tru9I TTAA 3 cut(s) 200, 503, 999
TseI GCWGC 2 cut(s) 302, 356
TspDTI ATGAA 5 cut(s) 129, 207, 270, 386, 695
XbaI TCTAGA 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 2 cut(s) 174, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.