Rh4CG139700

Nucleoporin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011206
Physical Location & Seq
Forward (+)
27677001 .. 27680338
3338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG139700.1

Sequence Viewer

Length: 981 bp
ATGGCAATAGGCACAGCACTCTCAGAGCCTCCCAAAATCTACAGATTCCCACAATCCAAGTACATAGACTCCGTCCGGTGGCTGCCTCCTATCTCAGCGTTGGACCGCTTGGCCGTGATCGCGGTTTTCGACTCGGATTCGGACTCTTCCTCCATACAAATCCACTCTTTCACCCAAGACTCATCACCAAATCTAACCCCCGACTCGCAATGGGACTCACCCTCGCGAGTTTCCTCTCTCACGGCGTCTCAATTCAAGCACAAGTCCCTCGTGGCCGCCGCAGCGTTTTCGGGTTCGCTTCACGTCTTGCTCACCGATGCAATGGACCCTTCGTCGTTTGAATCGGAGCTTTCGTTGCCCGAAAAGGCATTGCATGATGGCCCCATTGCTTGTGTGGATGTGATGGATTGTGGGCTTGAGTGTGTCACTGTTGGGGAAGATGGGAGGGTCAATCTAGTCAGTTTGGGGGAGTCTGAGCTCAGCTATAGGAGGATTTTCGATAGCAGTGGGTTGGTTTCGTTTACTTCGGCGAAATGGGCATCGCCGAGTGAGTTTGCTACCGGAGGATTTGGGTTTAGTCTGCAGTGGTGGGATCAGAGAAAACCTGGTGGGGCGGTTTCTCAGTTCAAGGGTGACTGGAATCAAAGAGCTTCCGGGATTGTACATTCCATTGATATTCATCCATCAAGAAAGCACACTTGTCTGGCAGGAGGCTCTTTAGGTACTGTATTTGCCTGGGATCTTAGGTGGCCACAACAGCCTCTTTTACTCTCTGGGGTTGGGTCAGGTGAAGCAAGCTGCTCACCATGTGAAAGTGATGTTTGGGAGGTTCAGTATGACCCCTATGTAAAGTCTTCAAACGTAGGAAATGTTTCTTCACGTATTTTACCTACTATGATCTGTTCTGAGGACGGAATTCTTGCTGTTGTTGAACAGGGTATGATGTTTTCTGCTATTTCTTTGACCAACTGTCACGTCTGA

Protein Analysis

326

Amino Acids

35.17

Weight (kDa)

4.89

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30840
fragaria_vesca FvH4_4g09770 FvH4_4g09770 FvH4_4g09770
malus_domestica MD10G1281400.v1.1
prunus_persica Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1
pyrus_communis pycom10g23530
rosa_chinensis RchiOBHm_Chr4g0405491
rosa_laevigata RLG00000008840
rosa_multiflora Rmu_co8147422.1_g000001
rosa_roxburghii Rroxscaffold_5G00349930
rosa_rugosa Rorug04G0060500 Rorug04G0060600
rosa_samantha Rh4AG132200 Rh4BG127000 Rh4CG139700 Rh4DG126300
rosa_wichuraiana Rw4G010700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 122, 226
AciI CCGC 5 cut(s) 106, 122, 276, 279, 614
AclWI GGATC 2 cut(s) 600, 747
AcoI YGGCCR 3 cut(s) 111, 273, 749
AcsI RAATTY 1 cut(s) 915
AcyI GRCGYC 1 cut(s) 245
AdeI CACNNNGTG 1 cut(s) 809
AfaI GTAC 3 cut(s) 62, 663, 724
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 5 cut(s) 256, 341, 628, 858, 932
AhdI GACNNNNNGTC 2 cut(s) 331, 969
AjiI CACGTC 2 cut(s) 304, 976
AjnI CCWGG 2 cut(s) 604, 734
AluBI AGCT 5 cut(s) 349, 478, 483, 650, 798
AluI AGCT 5 cut(s) 349, 478, 483, 650, 798
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 2 cut(s) 600, 747
AoxI GGCC 4 cut(s) 111, 273, 379, 749
ApeKI GCWGC 3 cut(s) 82, 281, 798
ApoI RAATTY 1 cut(s) 915
Asp700I GAANNNNTTC 1 cut(s) 871
AspS9I GGNCC 3 cut(s) 103, 325, 380
AsuC2I CCSGG 1 cut(s) 655
AsuHPI GGTGA 7 cut(s) 163, 177, 210, 304, 644, 795, 800
AvaII GGWCC 2 cut(s) 103, 325
BalI TGGCCA 1 cut(s) 751
BanII GRGCYC 1 cut(s) 480
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 3 cut(s) 69, 293, 785
BccI CCATC 4 cut(s) 371, 397, 434, 691
BceAI ACGGC 2 cut(s) 98, 258
BcgI CGANNNNNNTGC 2 cut(s) 270, 304
BciT130I CCWGG 2 cut(s) 606, 736
BcnI CCSGG 1 cut(s) 655
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 3 cut(s) 40, 484, 581
BisI GCNGC 5 cut(s) 83, 276, 279, 282, 799
BlpI GCTNAGC 1 cut(s) 479
BlsI GCNGC 5 cut(s) 84, 277, 280, 283, 800
Bme1390I CCNGG 3 cut(s) 606, 655, 736
Bme18I GGWCC 2 cut(s) 103, 325
BmeRI GACNNNNNGTC 2 cut(s) 331, 969
BmgBI CACGTC 2 cut(s) 304, 976
BmgT120I GGNCC 3 cut(s) 103, 325, 380
BmiI GGNNCC 2 cut(s) 327, 382
BmrFI CCNGG 3 cut(s) 606, 655, 736
BmsI GCATC 2 cut(s) 307, 548
BpiI GAAGAC 1 cut(s) 846
Bpu1102I GCTNAGC 1 cut(s) 479
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 655
BsaAI YACGTR 1 cut(s) 881
BsaBI GATNNNNATC 1 cut(s) 678
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 735
BsaWI WCCGGW 2 cut(s) 75, 560
BsaXI ACNNNNNCTCC 8 cut(s) 53, 83, 134, 164, 338, 368, 818, 848
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 641
Bse3DI GCAATG 4 cut(s) 215, 327, 368, 384
Bse8I GATNNNNATC 1 cut(s) 678
BseBI CCWGG 2 cut(s) 606, 736
BseDI CCNNGG 1 cut(s) 735
BseGI GGATG 2 cut(s) 403, 679
BseJI GATNNNNATC 1 cut(s) 678
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMI GCAATG 4 cut(s) 215, 327, 368, 384
BseMII CTCAG 6 cut(s) 36, 108, 465, 493, 635, 897
BseNI ACTGG 1 cut(s) 641
BseXI GCAGC 3 cut(s) 69, 293, 785
Bsh1236I CGCG 2 cut(s) 122, 226
BshFI GGCC 4 cut(s) 113, 275, 381, 751
BsiHKAI GWGCWC 1 cut(s) 480
BsiSI CCGG 3 cut(s) 76, 561, 654
BslFI GGGAC 2 cut(s) 227, 250
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 252
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 2 cut(s) 227, 250
BsnI GGCC 4 cut(s) 113, 275, 381, 751
Bsp1286I GDGCHC 1 cut(s) 480
Bsp1407I TGTACA 1 cut(s) 661
Bsp143I GATC 4 cut(s) 117, 592, 739, 897
Bsp1720I GCTNAGC 1 cut(s) 479
Bsp68I TCGCGA 1 cut(s) 226
BspACI CCGC 5 cut(s) 106, 122, 276, 279, 614
BspANI GGCC 4 cut(s) 113, 275, 381, 751
BspCNI CTCAG 6 cut(s) 35, 107, 466, 492, 634, 898
BspFNI CGCG 2 cut(s) 122, 226
BspLI GGNNCC 2 cut(s) 327, 382
BspMAI CTGCAG 1 cut(s) 585
BspPI GGATC 2 cut(s) 600, 747
BsrDI GCAATG 4 cut(s) 215, 327, 368, 384
BsrGI TGTACA 1 cut(s) 661
BsrI ACTGG 1 cut(s) 641
BssECI CCNNGG 1 cut(s) 735
BssMI GATC 4 cut(s) 117, 592, 739, 897
BssNI GRCGYC 1 cut(s) 245
BssSI CACGAG 1 cut(s) 269
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 2 cut(s) 606, 736
Bst4CI ACNGT 3 cut(s) 430, 727, 971
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 245
BstAUI TGTACA 1 cut(s) 661
BstBAI YACGTR 1 cut(s) 881
BstC8I GCNNGC 1 cut(s) 796
BstDEI CTNAG 7 cut(s) 22, 94, 474, 479, 621, 743, 906
BstF5I GGATG 2 cut(s) 403, 679
BstFNI CGCG 2 cut(s) 122, 226
BstKTI GATC 4 cut(s) 120, 595, 742, 900
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 4 cut(s) 117, 592, 739, 897
BstMWI GCNNNNNNNGC 5 cut(s) 119, 281, 355, 536, 757
BstNI CCWGG 2 cut(s) 606, 736
BstSCI CCNGG 3 cut(s) 604, 653, 734
BstSFI CTRYAG 3 cut(s) 40, 484, 581
BstUI CGCG 2 cut(s) 122, 226
BstV1I GCAGC 3 cut(s) 69, 293, 785
BstV2I GAAGAC 1 cut(s) 846
BstX2I RGATCY 1 cut(s) 739
BstYI RGATCY 1 cut(s) 739
BsuRI GGCC 4 cut(s) 113, 275, 381, 751
BtgZI GCGATG 1 cut(s) 525
BtrI CACGTC 2 cut(s) 304, 976
BtsCI GGATG 2 cut(s) 403, 679
BtsI GCAGTG 2 cut(s) 511, 590
BtsIMutI CAGTG 3 cut(s) 426, 511, 590
BtuMI TCGCGA 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 796
Cfr13I GGNCC 3 cut(s) 103, 325, 380
CseI GACGC 1 cut(s) 234
CsiI ACCWGGT 1 cut(s) 604
Csp6I GTAC 3 cut(s) 61, 662, 723
CviAII CATG 2 cut(s) 374, 807
CviQI GTAC 3 cut(s) 61, 662, 723
DdeI CTNAG 7 cut(s) 22, 94, 474, 479, 621, 743, 906
DpnI GATC 4 cut(s) 119, 594, 741, 899
DpnII GATC 4 cut(s) 117, 592, 739, 897
DraIII CACNNNGTG 1 cut(s) 809
DriI GACNNNNNGTC 2 cut(s) 331, 969
EaeI YGGCCR 3 cut(s) 111, 273, 749
Eam1104I CTCTTC 1 cut(s) 151
Eam1105I GACNNNNNGTC 2 cut(s) 331, 969
EarI CTCTTC 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 480
Eco47I GGWCC 2 cut(s) 103, 325
Eco53kI GAGCTC 1 cut(s) 478
EcoICRI GAGCTC 1 cut(s) 478
EcoRI GAATTC 1 cut(s) 915
EcoRII CCWGG 2 cut(s) 604, 734
EcoT38I GRGCYC 1 cut(s) 480
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 2 cut(s) 377, 810
FaiI YATR 9 cut(s) 65, 155, 375, 486, 808, 837, 846, 896, 941
FaqI GGGAC 2 cut(s) 227, 250
FatI CATG 2 cut(s) 373, 806
Fnu4HI GCNGC 5 cut(s) 83, 276, 279, 282, 799
FokI GGATG 2 cut(s) 410, 666
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 5 cut(s) 83, 276, 279, 282, 799
FspBI CTAG 1 cut(s) 455
GluI GCNGC 5 cut(s) 83, 276, 279, 282, 799
HaeIII GGCC 4 cut(s) 113, 275, 381, 751
HapII CCGG 3 cut(s) 76, 561, 654
HgaI GACGC 1 cut(s) 234
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 2 cut(s) 377, 810
HpaII CCGG 3 cut(s) 76, 561, 654
HphI GGTGA 7 cut(s) 163, 177, 210, 304, 644, 795, 800
Hpy166II GTNNAC 1 cut(s) 522
Hpy188I TCNGA 8 cut(s) 25, 136, 142, 346, 475, 597, 907, 980
Hpy188III TCNNGA 2 cut(s) 225, 687
Hpy8I GTNNAC 1 cut(s) 522
Hpy99I CGWCG 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 339
HpyCH4III ACNGT 3 cut(s) 430, 727, 971
HpyCH4IV ACGT 4 cut(s) 303, 861, 880, 975
HpyCH4V TGCA 3 cut(s) 320, 373, 583
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 281, 355, 536, 757
HpyF3I CTNAG 7 cut(s) 22, 94, 474, 479, 621, 743, 906
HpySE526I ACGT 4 cut(s) 303, 861, 880, 975
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 2 cut(s) 377, 810
Kzo9I GATC 4 cut(s) 117, 592, 739, 897
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 3 cut(s) 69, 293, 785
LweI GCATC 2 cut(s) 307, 548
MabI ACCWGGT 1 cut(s) 604
MaeI CTAG 1 cut(s) 455
MaeII ACGT 4 cut(s) 303, 861, 880, 975
MaeIII GTNAC 3 cut(s) 424, 632, 971
MalI GATC 4 cut(s) 119, 594, 741, 899
MboI GATC 4 cut(s) 117, 592, 739, 897
MboII GAAGA 4 cut(s) 138, 449, 846, 867
MflI RGATCY 1 cut(s) 739
MhlI GDGCHC 1 cut(s) 480
MlsI TGGCCA 1 cut(s) 751
MluCI AATT 2 cut(s) 251, 915
MluNI TGGCCA 1 cut(s) 751
MlyI GAGTC 7 cut(s) 62, 125, 137, 173, 197, 209, 479
MmeI TCCRAC 1 cut(s) 81
Mox20I TGGCCA 1 cut(s) 751
MroXI GAANNNNTTC 1 cut(s) 871
MscI TGGCCA 1 cut(s) 751
Msp20I TGGCCA 1 cut(s) 751
MspI CCGG 3 cut(s) 76, 561, 654
MspR9I CCNGG 3 cut(s) 606, 655, 736
MvaI CCWGG 2 cut(s) 606, 736
MvnI CGCG 2 cut(s) 122, 226
MwoI GCNNNNNNNGC 5 cut(s) 119, 281, 355, 536, 757
NciI CCSGG 1 cut(s) 655
NdeII GATC 4 cut(s) 117, 592, 739, 897
NlaIII CATG 2 cut(s) 377, 810
NlaIV GGNNCC 2 cut(s) 327, 382
NmeAIII GCCGAG 1 cut(s) 570
NmuCI GTSAC 3 cut(s) 424, 632, 971
NruI TCGCGA 1 cut(s) 226
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 350
PdmI GAANNNNTTC 1 cut(s) 871
PfeI GAWTC 4 cut(s) 45, 137, 341, 640
PflFI GACNNNGTC 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 653
PkrI GCNGC 5 cut(s) 84, 277, 280, 283, 800
PleI GAGTC 7 cut(s) 62, 125, 137, 173, 197, 209, 478
PpsI GAGTC 7 cut(s) 62, 125, 137, 173, 197, 209, 478
Ppu21I YACGTR 1 cut(s) 881
Psp124BI GAGCTC 1 cut(s) 480
Psp6I CCWGG 2 cut(s) 604, 734
PspGI CCWGG 2 cut(s) 604, 734
PspN4I GGNNCC 2 cut(s) 327, 382
PspPI GGNCC 3 cut(s) 103, 325, 380
PstI CTGCAG 1 cut(s) 585
PsuI RGATCY 1 cut(s) 739
PsyI GACNNNGTC 1 cut(s) 71
RruI TCGCGA 1 cut(s) 226
RsaI GTAC 3 cut(s) 62, 663, 724
RsaNI GTAC 3 cut(s) 61, 662, 723
SacI GAGCTC 1 cut(s) 480
SatI GCNGC 5 cut(s) 83, 276, 279, 282, 799
Sau3AI GATC 4 cut(s) 117, 592, 739, 897
Sau96I GGNCC 3 cut(s) 103, 325, 380
SchI GAGTC 7 cut(s) 62, 125, 137, 173, 197, 209, 479
ScrFI CCNGG 3 cut(s) 606, 655, 736
SduI GDGCHC 1 cut(s) 480
SexAI ACCWGGT 1 cut(s) 604
SfaNI GCATC 2 cut(s) 307, 548
SfcI CTRYAG 3 cut(s) 40, 484, 581
SinI GGWCC 2 cut(s) 103, 325
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 2 cut(s) 251, 915
SsiI CCGC 5 cut(s) 106, 122, 276, 279, 614
SspMI CTAG 1 cut(s) 455
SstI GAGCTC 1 cut(s) 480
StyD4I CCNGG 3 cut(s) 604, 653, 734
TaaI ACNGT 3 cut(s) 430, 727, 971
TaiI ACGT 4 cut(s) 306, 864, 883, 978
TaqI TCGA 2 cut(s) 129, 498
TasI AATT 2 cut(s) 251, 915
TatI WGTACW 2 cut(s) 60, 661
TauI GCSGC 2 cut(s) 278, 281
TfiI GAWTC 4 cut(s) 45, 137, 341, 640
TscAI CASTG 3 cut(s) 433, 511, 590
TseFI GTSAC 3 cut(s) 424, 632, 971
TseI GCWGC 3 cut(s) 82, 281, 798
Tsp45I GTSAC 3 cut(s) 424, 632, 971
TspDTI ATGAA 1 cut(s) 668
TspGWI ACGGA 2 cut(s) 61, 927
TspRI CASTG 3 cut(s) 433, 511, 590
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 2 cut(s) 103, 325
XapI RAATTY 1 cut(s) 915
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmnI GAANNNNTTC 1 cut(s) 871
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.