RLG00000008840

Nucleoporin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011206
Physical Location & Seq
Reverse (-)
40784314 .. 40787122
2809 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008840

Sequence Viewer

Length: 1068 bp
ATGGCAATAGGCACAGCACTCTCAGCGCCTCCCAAAATCCACAGATTCCCACAATCCAAGTACATAGACTCCGTCCGGTGGCTGCCTCCTATCTCAGCCCTGGACCGCTTGGCCGTGATCGCGGTTTTCGACTCGGATTCGGACTCTTCCTCCATACAAATCCACTCTTTCACCCAAGACCCCTCACCAAATCTAACCCCTCACTCGCAATGGGACGCGCCCTCGCGAGTTTCCTCTCTCACGACGTCTCAGTTCAAGCACAAGTCCCTCGTGGCCGCCGCAGCGTTTTCGGGTTCGCTTCACGTCTTGCTCACCGATGCAGTGGACCCTTCGTCGTTTGAATCGGAGCTTTCGTTGCCCGAAAAGGCATTGCATGATGGGCCCATTGCTTGTGTGGATGTGATGGATAGTGGGCTTGAGTGTGTCACTGTTGGGGAAGATGGGAGGGTCAATCTAGTCAGCTTGGGGGAGTCTGAGCTGAGGTATAGGAGGATTTTCGATAGCAGTGGGTTGGTTTCGTTTACTTCGGCGAAATGGGCATCGCCGAGTGAGTTTGCTACTGGAGGATTTGGGTTTAGTCTGCAGTGGTGGGATCAGAGAAAGCCTGGTGGGGCGGTTTCTCAGTTCAAGGGTGACTGGAATCAAAGAAAAGCTTCCGGGATTGTACATTCCATTGATATTCATCCATCAAGAAAGCACACTTGTCTGGCCGGAGGCTCTTTAGGTATTGTATTTGCCTGGGATCTTAGGTGGCCACAACAGCCTCTTTTACTCTCTGGGGTTGGGTCAGGTGAAGCAAGCTGCTCACCATGTGAAAGTGAGGTTTGGGAAGTTCAGTATGACCCCTATGTAAAGTCTTCGAATGTAGGAAATGTTTCTTCACGTATTTTACCTACTATGATCTGTTCTGAGGACGGAATTCTTGCTGTTGTTGAACAGGGTGAGGAACCCATTGAGCTCTCAGCTGAACCTTGTGCAATCAACAGTTTTGACATAGACCAGCAATATCCTTCTGATGTGATATACAGCTTGGAGTGGGAATCTTTAGCCATCTTGACAAGGCCATGA

Protein Analysis

356

Amino Acids

38.54

Weight (kDa)

4.81

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30840
fragaria_vesca FvH4_4g09770 FvH4_4g09770 FvH4_4g09770
malus_domestica MD10G1281400.v1.1
prunus_persica Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1
pyrus_communis pycom10g23530
rosa_chinensis RchiOBHm_Chr4g0405491
rosa_laevigata RLG00000008840
rosa_multiflora Rmu_co8147422.1_g000001
rosa_roxburghii Rroxscaffold_5G00349930
rosa_rugosa Rorug04G0060500 Rorug04G0060600
rosa_samantha Rh4AG132200 Rh4BG127000 Rh4CG139700 Rh4DG126300
rosa_wichuraiana Rw4G010700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 248
AccII CGCG 3 cut(s) 122, 218, 226
AciI CCGC 5 cut(s) 106, 122, 276, 279, 614
AclWI GGATC 2 cut(s) 600, 750
AcoI YGGCCR 4 cut(s) 111, 273, 708, 752
AcsI RAATTY 1 cut(s) 918
AcyI GRCGYC 1 cut(s) 245
AdeI CACNNNGTG 1 cut(s) 812
AfaI GTAC 2 cut(s) 62, 666
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 4 cut(s) 256, 341, 628, 935
AhdI GACNNNNNGTC 1 cut(s) 331
AjiI CACGTC 1 cut(s) 304
AjnI CCWGG 3 cut(s) 99, 604, 737
AluBI AGCT 8 cut(s) 349, 462, 478, 653, 801, 958, 965, 1029
AluI AGCT 8 cut(s) 349, 462, 478, 653, 801, 958, 965, 1029
Alw21I GWGCWC 1 cut(s) 960
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 2 cut(s) 600, 750
AoxI GGCC 6 cut(s) 111, 273, 380, 708, 752, 1061
ApaI GGGCCC 1 cut(s) 384
ApeKI GCWGC 3 cut(s) 82, 281, 801
ApoI RAATTY 1 cut(s) 918
Asp700I GAANNNNTTC 2 cut(s) 652, 874
AspLEI GCGC 2 cut(s) 28, 220
AspS9I GGNCC 4 cut(s) 103, 325, 380, 381
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 7 cut(s) 163, 177, 304, 644, 798, 803, 953
AsuII TTCGAA 1 cut(s) 860
AvaII GGWCC 2 cut(s) 103, 325
BaeGI GKGCMC 1 cut(s) 384
BalI TGGCCA 1 cut(s) 754
BanII GRGCYC 2 cut(s) 384, 960
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 849
Bbv12I GWGCWC 1 cut(s) 960
BbvCI CCTCAGC 1 cut(s) 479
BbvI GCAGC 3 cut(s) 69, 293, 788
BccI CCATC 5 cut(s) 371, 397, 434, 694, 1058
BceAI ACGGC 1 cut(s) 98
BcgI CGANNNNNNTGC 2 cut(s) 270, 304
BciT130I CCWGG 3 cut(s) 101, 606, 739
BcnI CCSGG 1 cut(s) 658
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 1 cut(s) 581
BfoI RGCGCY 1 cut(s) 29
BisI GCNGC 5 cut(s) 83, 276, 279, 282, 802
BlsI GCNGC 5 cut(s) 84, 277, 280, 283, 803
Bme1390I CCNGG 4 cut(s) 101, 606, 658, 739
Bme18I GGWCC 2 cut(s) 103, 325
BmeRI GACNNNNNGTC 1 cut(s) 331
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 4 cut(s) 103, 325, 380, 381
BmiI GGNNCC 3 cut(s) 327, 382, 948
BmrFI CCNGG 4 cut(s) 101, 606, 658, 739
BmsI GCATC 2 cut(s) 307, 548
BpiI GAAGAC 1 cut(s) 849
BpmI CTGGAG 1 cut(s) 582
Bpu10I CCTNAGC 1 cut(s) 479
Bpu14I TTCGAA 1 cut(s) 860
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 658
BsaAI YACGTR 1 cut(s) 884
BsaBI GATNNNNATC 1 cut(s) 681
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 99, 738
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 134, 164, 338, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse1I ACTGG 2 cut(s) 565, 641
Bse3DI GCAATG 3 cut(s) 215, 368, 384
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 3 cut(s) 101, 606, 739
BseDI CCNNGG 2 cut(s) 99, 738
BseGI GGATG 2 cut(s) 403, 682
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMI GCAATG 3 cut(s) 215, 368, 384
BseMII CTCAG 8 cut(s) 36, 108, 263, 465, 470, 635, 900, 975
BseNI ACTGG 2 cut(s) 565, 641
BseSI GKGCMC 1 cut(s) 384
BseXI GCAGC 3 cut(s) 69, 293, 788
Bsh1236I CGCG 3 cut(s) 122, 218, 226
BshFI GGCC 6 cut(s) 113, 275, 382, 710, 754, 1063
BsiHKAI GWGCWC 1 cut(s) 960
BsiSI CCGG 3 cut(s) 76, 657, 711
BslFI GGGAC 2 cut(s) 227, 250
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 252
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 2 cut(s) 227, 250
BsnI GGCC 6 cut(s) 113, 275, 382, 710, 754, 1063
Bsp119I TTCGAA 1 cut(s) 860
Bsp120I GGGCCC 1 cut(s) 380
Bsp1286I GDGCHC 2 cut(s) 384, 960
Bsp1407I TGTACA 1 cut(s) 664
Bsp143I GATC 4 cut(s) 117, 592, 742, 900
Bsp68I TCGCGA 1 cut(s) 226
BspACI CCGC 5 cut(s) 106, 122, 276, 279, 614
BspANI GGCC 6 cut(s) 113, 275, 382, 710, 754, 1063
BspCNI CTCAG 8 cut(s) 35, 107, 262, 466, 471, 634, 901, 974
BspFNI CGCG 3 cut(s) 122, 218, 226
BspLI GGNNCC 3 cut(s) 327, 382, 948
BspMAI CTGCAG 1 cut(s) 585
BspPI GGATC 2 cut(s) 600, 750
BspT104I TTCGAA 1 cut(s) 860
BsrDI GCAATG 3 cut(s) 215, 368, 384
BsrGI TGTACA 1 cut(s) 664
BsrI ACTGG 2 cut(s) 565, 641
BssECI CCNNGG 2 cut(s) 99, 738
BssMI GATC 4 cut(s) 117, 592, 742, 900
BssNI GRCGYC 1 cut(s) 245
BssSI CACGAG 1 cut(s) 269
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 3 cut(s) 101, 606, 739
Bst4CI ACNGT 2 cut(s) 430, 986
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 245
BstAUI TGTACA 1 cut(s) 664
BstBAI YACGTR 1 cut(s) 884
BstBI TTCGAA 1 cut(s) 860
BstC8I GCNNGC 1 cut(s) 799
BstDEI CTNAG 9 cut(s) 22, 94, 249, 474, 479, 621, 746, 909, 961
BstF5I GGATG 2 cut(s) 403, 682
BstFNI CGCG 3 cut(s) 122, 218, 226
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 2 cut(s) 28, 220
BstKTI GATC 4 cut(s) 120, 595, 745, 903
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 4 cut(s) 117, 592, 742, 900
BstMWI GCNNNNNNNGC 7 cut(s) 23, 119, 281, 355, 379, 536, 760
BstNI CCWGG 3 cut(s) 101, 606, 739
BstSCI CCNGG 4 cut(s) 99, 604, 656, 737
BstSFI CTRYAG 1 cut(s) 581
BstSLI GKGCMC 1 cut(s) 384
BstUI CGCG 3 cut(s) 122, 218, 226
BstV1I GCAGC 3 cut(s) 69, 293, 788
BstV2I GAAGAC 1 cut(s) 849
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BsuRI GGCC 6 cut(s) 113, 275, 382, 710, 754, 1063
BtgZI GCGATG 1 cut(s) 525
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 2 cut(s) 403, 682
BtsI GCAGTG 3 cut(s) 327, 511, 590
BtsIMutI CAGTG 4 cut(s) 327, 426, 511, 590
BtuMI TCGCGA 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 799
CfoI GCGC 2 cut(s) 28, 220
Cfr13I GGNCC 4 cut(s) 103, 325, 380, 381
CseI GACGC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 61, 665
CviAII CATG 3 cut(s) 374, 810, 1065
CviQI GTAC 2 cut(s) 61, 665
DdeI CTNAG 9 cut(s) 22, 94, 249, 474, 479, 621, 746, 909, 961
DpnI GATC 4 cut(s) 119, 594, 744, 902
DpnII GATC 4 cut(s) 117, 592, 742, 900
DraIII CACNNNGTG 1 cut(s) 812
DriI GACNNNNNGTC 1 cut(s) 331
EaeI YGGCCR 4 cut(s) 111, 273, 708, 752
Eam1104I CTCTTC 1 cut(s) 151
Eam1105I GACNNNNNGTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 958
Eco24I GRGCYC 2 cut(s) 384, 960
Eco47I GGWCC 2 cut(s) 103, 325
Eco53kI GAGCTC 1 cut(s) 958
EcoICRI GAGCTC 1 cut(s) 958
EcoRI GAATTC 1 cut(s) 918
EcoRII CCWGG 3 cut(s) 99, 604, 737
EcoT38I GRGCYC 2 cut(s) 384, 960
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 3 cut(s) 377, 813, 1068
FalI AAGNNNNNCTT 2 cut(s) 637, 669
FaqI GGGAC 2 cut(s) 227, 250
FatI CATG 3 cut(s) 373, 809, 1064
Fnu4HI GCNGC 5 cut(s) 83, 276, 279, 282, 802
FokI GGATG 2 cut(s) 410, 669
FriOI GRGCYC 2 cut(s) 384, 960
Fsp4HI GCNGC 5 cut(s) 83, 276, 279, 282, 802
FspBI CTAG 1 cut(s) 455
GlaI GCGC 2 cut(s) 27, 219
GluI GCNGC 5 cut(s) 83, 276, 279, 282, 802
GsuI CTGGAG 1 cut(s) 582
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 6 cut(s) 113, 275, 382, 710, 754, 1063
HapII CCGG 3 cut(s) 76, 657, 711
HgaI GACGC 1 cut(s) 224
HhaI GCGC 2 cut(s) 28, 220
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 3 cut(s) 377, 813, 1068
Hin6I GCGC 2 cut(s) 26, 218
HinP1I GCGC 2 cut(s) 26, 218
HindIII AAGCTT 1 cut(s) 651
HinfI GANTC 9 cut(s) 45, 68, 131, 137, 143, 341, 470, 640, 1040
HpaII CCGG 3 cut(s) 76, 657, 711
HphI GGTGA 7 cut(s) 163, 177, 304, 644, 798, 803, 953
Hpy166II GTNNAC 2 cut(s) 325, 522
Hpy188I TCNGA 7 cut(s) 136, 142, 346, 475, 597, 910, 1015
Hpy188III TCNNGA 4 cut(s) 225, 241, 690, 1054
Hpy8I GTNNAC 2 cut(s) 325, 522
Hpy99I CGWCG 2 cut(s) 247, 337
HpyAV CCTTC 2 cut(s) 339, 1020
HpyCH4III ACNGT 2 cut(s) 430, 986
HpyCH4IV ACGT 3 cut(s) 245, 303, 883
HpyCH4V TGCA 4 cut(s) 320, 373, 583, 977
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 119, 281, 355, 379, 536, 760
HpyF3I CTNAG 9 cut(s) 22, 94, 249, 474, 479, 621, 746, 909, 961
HpySE526I ACGT 3 cut(s) 245, 303, 883
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 3 cut(s) 377, 813, 1068
HspAI GCGC 2 cut(s) 26, 218
Kzo9I GATC 4 cut(s) 117, 592, 742, 900
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 3 cut(s) 69, 293, 788
LweI GCATC 2 cut(s) 307, 548
MaeI CTAG 1 cut(s) 455
MaeII ACGT 3 cut(s) 245, 303, 883
MaeIII GTNAC 2 cut(s) 424, 632
MalI GATC 4 cut(s) 119, 594, 744, 902
MboI GATC 4 cut(s) 117, 592, 742, 900
MboII GAAGA 4 cut(s) 138, 449, 849, 870
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 2 cut(s) 384, 960
MlsI TGGCCA 1 cut(s) 754
MluCI AATT 1 cut(s) 918
MluNI TGGCCA 1 cut(s) 754
MlyI GAGTC 4 cut(s) 62, 125, 137, 479
Mox20I TGGCCA 1 cut(s) 754
MroXI GAANNNNTTC 2 cut(s) 652, 874
MscI TGGCCA 1 cut(s) 754
Msp20I TGGCCA 1 cut(s) 754
MspA1I CMGCKG 1 cut(s) 965
MspI CCGG 3 cut(s) 76, 657, 711
MspR9I CCNGG 4 cut(s) 101, 606, 658, 739
MvaI CCWGG 3 cut(s) 101, 606, 739
MvnI CGCG 3 cut(s) 122, 218, 226
MwoI GCNNNNNNNGC 7 cut(s) 23, 119, 281, 355, 379, 536, 760
NciI CCSGG 1 cut(s) 658
NdeII GATC 4 cut(s) 117, 592, 742, 900
NlaIII CATG 3 cut(s) 377, 813, 1068
NlaIV GGNNCC 3 cut(s) 327, 382, 948
NmeAIII GCCGAG 1 cut(s) 570
NmuCI GTSAC 2 cut(s) 424, 632
NruI TCGCGA 1 cut(s) 226
NspV TTCGAA 1 cut(s) 860
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 350
PdmI GAANNNNTTC 2 cut(s) 652, 874
PfeI GAWTC 5 cut(s) 45, 137, 341, 640, 1040
PflFI GACNNNGTC 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 656
PkrI GCNGC 5 cut(s) 84, 277, 280, 283, 803
PleI GAGTC 4 cut(s) 62, 125, 137, 478
PpsI GAGTC 4 cut(s) 62, 125, 137, 478
Ppu21I YACGTR 1 cut(s) 884
Psp124BI GAGCTC 1 cut(s) 960
Psp6I CCWGG 3 cut(s) 99, 604, 737
PspGI CCWGG 3 cut(s) 99, 604, 737
PspN4I GGNNCC 3 cut(s) 327, 382, 948
PspOMI GGGCCC 1 cut(s) 380
PspPI GGNCC 4 cut(s) 103, 325, 380, 381
PstI CTGCAG 1 cut(s) 585
PsuI RGATCY 1 cut(s) 742
PsyI GACNNNGTC 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 965
RruI TCGCGA 1 cut(s) 226
RsaI GTAC 2 cut(s) 62, 666
RsaNI GTAC 2 cut(s) 61, 665
SacI GAGCTC 1 cut(s) 960
SatI GCNGC 5 cut(s) 83, 276, 279, 282, 802
Sau3AI GATC 4 cut(s) 117, 592, 742, 900
Sau96I GGNCC 4 cut(s) 103, 325, 380, 381
SchI GAGTC 4 cut(s) 62, 125, 137, 479
ScrFI CCNGG 4 cut(s) 101, 606, 658, 739
SduI GDGCHC 2 cut(s) 384, 960
SfaNI GCATC 2 cut(s) 307, 548
SfcI CTRYAG 1 cut(s) 581
SfuI TTCGAA 1 cut(s) 860
SinI GGWCC 2 cut(s) 103, 325
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 1 cut(s) 918
SsiI CCGC 5 cut(s) 106, 122, 276, 279, 614
SspMI CTAG 1 cut(s) 455
SstI GAGCTC 1 cut(s) 960
StyD4I CCNGG 4 cut(s) 99, 604, 656, 737
TaaI ACNGT 2 cut(s) 430, 986
TaiI ACGT 3 cut(s) 248, 306, 886
TaqI TCGA 3 cut(s) 129, 498, 860
TasI AATT 1 cut(s) 918
TatI WGTACW 2 cut(s) 60, 664
TauI GCSGC 2 cut(s) 278, 281
TfiI GAWTC 5 cut(s) 45, 137, 341, 640, 1040
TscAI CASTG 4 cut(s) 327, 433, 511, 590
TseFI GTSAC 2 cut(s) 424, 632
TseI GCWGC 3 cut(s) 82, 281, 801
Tsp45I GTSAC 2 cut(s) 424, 632
TspDTI ATGAA 1 cut(s) 671
TspGWI ACGGA 2 cut(s) 61, 930
TspRI CASTG 4 cut(s) 327, 433, 511, 590
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 2 cut(s) 103, 325
XapI RAATTY 1 cut(s) 918
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmnI GAANNNNTTC 2 cut(s) 652, 874
XspI CTAG 1 cut(s) 455
ZraI GACGTC 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.