FvH4_4g09770

Nucleoporin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011206
Physical Location & Seq
Forward (+)
11666870 .. 11670244
3375 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09770.t1

Sequence Viewer

Length: 1068 bp
ATGGTGATAGGCACAGCGCTCTCAGAGCCTCCCAAGATCCACAGATTCCCTCAACCCAATTACATAGACTCCGTCCGGTGGCTTCCCCCAGTCTCCGCCTTGGACCGGTTGGCCGTGATCGCTGTTTTCGACTCCGATAAGGACTCTTCCTCTATAGAAATCCACTCTTTCACCCAAGACCCATCACCAAATCTGACCCTTCATTCGCAATGGGACGCACCCTCGCGAATTTCCTCCCTCACGGCCTCTCAGTTCAACCACAGATCCCTAGTGGCCGCCGCGACGCTTTCGGGATCGCTTCACGTGTTGCTCACCGGCGCAATGGACCCTTCGGAGTTCGCGTCGGAGCTTTCGGTGCCCGAGAAGGTGTTGCATGATGGAGCCATTTCTTGTGGGGATGTGATGGATGGTGGGGTTGAGTGTGTCACTGTTGGGGAAGATGGGAGGGTGAATGTGGTCAGTTTAGGGGAGGATCAGCTGAGCTATAAGAGGATTTTCGATAGCAGCGGGCTGGTTTCGTTTACTTCGGCGAAATGGGCATCTCCCAGTGAGTTTGCTACCGGAGGGTTTGGGTTTAGTCTGCAGTGGTGGGATCAGAGAAAGACCGGTGGGGCGGTTTCTCAGTTCAAGGGTGACTGGAATCAAAGCAAATCTTCAGGGATTGTACATTCCATAGATATTCATCCATCGAGAAAGCACACTTGTCTGGCAGGAGGCTCTTTAGGTACTGTATTTGCCTGGGATCTTAGATGGCCACAACAGCCACTTATACTCTCTGGGGTTGGGTCAGGTGAAGCAACCTGCTCTCCATGTGAAAGTGAGGTTTGGGAGGTTCAGTATGACCCCTATGTGAAGTCTACAAACGTAGGAAGTGGTTCTTCACGTATTTTACCTACTATGATCTGTTCTGAGGACGGAATTCTTGCTGTTGTTGAACAGGGTGAGGAACCTATTGAGCTCTCGGCAGAACCTTGTGCAATCAACAGCTTTGACATAGACCAGCAGTCTCCATCAGATGTGATCTACAGCCTGGAGTGGGAATCTATAGCCATCTTGACAAGGCCATGA

Protein Analysis

356

Amino Acids

38.27

Weight (kDa)

4.62

Isoelectric Point (pI)

57.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30840
fragaria_vesca FvH4_4g09770 FvH4_4g09770 FvH4_4g09770
malus_domestica MD10G1281400.v1.1
prunus_persica Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1
pyrus_communis pycom10g23530
rosa_chinensis RchiOBHm_Chr4g0405491
rosa_laevigata RLG00000008840
rosa_multiflora Rmu_co8147422.1_g000001
rosa_roxburghii Rroxscaffold_5G00349930
rosa_rugosa Rorug04G0060500 Rorug04G0060600
rosa_samantha Rh4AG132200 Rh4BG127000 Rh4CG139700 Rh4DG126300
rosa_wichuraiana Rw4G010700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 809
AccB1I GGYRCC 1 cut(s) 355
AccI GTMKAC 1 cut(s) 857
AccII CGCG 3 cut(s) 226, 281, 341
AciI CCGC 5 cut(s) 96, 276, 279, 507, 614
AclWI GGATC 6 cut(s) 31, 258, 301, 480, 600, 750
AcoI YGGCCR 3 cut(s) 111, 273, 752
AcsI RAATTY 2 cut(s) 228, 918
AcuI CTGAAG 1 cut(s) 639
AcvI CACGTG 1 cut(s) 304
AfaI GTAC 2 cut(s) 666, 727
AfeI AGCGCT 1 cut(s) 18
AfiI CCNNNNNNNGG 3 cut(s) 78, 105, 1036
AflIII ACRYGT 1 cut(s) 303
AgeI ACCGGT 2 cut(s) 105, 605
AgsI TTSAA 3 cut(s) 256, 628, 935
AhdI GACNNNNNGTC 1 cut(s) 1003
AjnI CCWGG 2 cut(s) 737, 1029
AluBI AGCT 5 cut(s) 349, 478, 483, 958, 987
AluI AGCT 5 cut(s) 349, 478, 483, 958, 987
Alw21I GWGCWC 1 cut(s) 960
Alw26I GTCTC 2 cut(s) 97, 1011
AlwI GGATC 6 cut(s) 31, 258, 301, 480, 600, 750
Ama87I CYCGRG 1 cut(s) 359
Aor51HI AGCGCT 1 cut(s) 18
AoxI GGCC 5 cut(s) 111, 243, 273, 752, 1061
ApeKI GCWGC 1 cut(s) 504
ApoI RAATTY 2 cut(s) 228, 918
ArsI GACNNNNNNTTYG 2 cut(s) 187, 219
AsiGI ACCGGT 2 cut(s) 105, 605
Asp700I GAANNNNTTC 1 cut(s) 874
AspLEI GCGC 2 cut(s) 19, 320
AspS9I GGNCC 2 cut(s) 103, 325
AsuHPI GGTGA 8 cut(s) 16, 163, 177, 304, 460, 644, 803, 953
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 2 cut(s) 103, 325
BaeGI GKGCMC 1 cut(s) 360
BalI TGGCCA 1 cut(s) 754
BanI GGYRCC 1 cut(s) 355
BanII GRGCYC 1 cut(s) 960
BbrPI CACGTG 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 960
BbvI GCAGC 1 cut(s) 516
BccI CCATC 9 cut(s) 190, 371, 397, 401, 434, 694, 744, 1018, 1058
BceAI ACGGC 2 cut(s) 98, 258
BciT130I CCWGG 2 cut(s) 739, 1031
BcoDI GTCTC 2 cut(s) 97, 1011
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 4 cut(s) 153, 581, 1024, 1044
BfoI RGCGCY 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 809
BisI GCNGC 3 cut(s) 276, 279, 505
BlpI GCTNAGC 1 cut(s) 479
BlsI GCNGC 3 cut(s) 277, 280, 506
Bme1390I CCNGG 2 cut(s) 739, 1031
Bme18I GGWCC 2 cut(s) 103, 325
BmeRI GACNNNNNGTC 1 cut(s) 1003
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 2 cut(s) 103, 325
BmiI GGNNCC 4 cut(s) 327, 357, 382, 948
BmrFI CCNGG 2 cut(s) 739, 1031
BmrI ACTGGG 2 cut(s) 83, 540
BmsI GCATC 1 cut(s) 548
BmuI ACTGGG 2 cut(s) 83, 540
BpmI CTGGAG 1 cut(s) 1052
Bpu1102I GCTNAGC 1 cut(s) 479
BsaAI YACGTR 2 cut(s) 304, 884
BsaBI GATNNNNATC 1 cut(s) 681
BsaJI CCNNGG 2 cut(s) 99, 738
BsaWI WCCGGW 4 cut(s) 75, 105, 560, 605
BsaXI ACNNNNNCTCC 8 cut(s) 53, 83, 326, 356, 790, 820, 821, 851
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 105, 1036
Bse118I RCCGGY 3 cut(s) 105, 314, 605
Bse1I ACTGG 3 cut(s) 89, 546, 641
Bse3DI GCAATG 2 cut(s) 215, 327
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 2 cut(s) 739, 1031
BseDI CCNNGG 2 cut(s) 99, 738
BseGI GGATG 3 cut(s) 403, 412, 682
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 3 cut(s) 78, 105, 1036
BseMI GCAATG 2 cut(s) 215, 327
BseMII CTCAG 5 cut(s) 36, 263, 470, 635, 900
BseNI ACTGG 3 cut(s) 89, 546, 641
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 1 cut(s) 516
Bsh1236I CGCG 3 cut(s) 226, 281, 341
BshFI GGCC 5 cut(s) 113, 245, 275, 754, 1063
BshNI GGYRCC 1 cut(s) 355
BshTI ACCGGT 2 cut(s) 105, 605
BsiHKAI GWGCWC 1 cut(s) 960
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 5 cut(s) 76, 106, 315, 561, 606
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 3 cut(s) 78, 105, 1036
BsmAI GTCTC 2 cut(s) 97, 1011
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 5 cut(s) 113, 245, 275, 754, 1063
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 2 cut(s) 360, 960
Bsp1407I TGTACA 1 cut(s) 664
Bsp143I GATC 9 cut(s) 36, 117, 263, 293, 472, 592, 742, 900, 1020
Bsp1720I GCTNAGC 1 cut(s) 479
Bsp68I TCGCGA 1 cut(s) 226
BspACI CCGC 5 cut(s) 96, 276, 279, 507, 614
BspANI GGCC 5 cut(s) 113, 245, 275, 754, 1063
BspCNI CTCAG 5 cut(s) 35, 262, 471, 634, 901
BspFNI CGCG 3 cut(s) 226, 281, 341
BspLI GGNNCC 4 cut(s) 327, 357, 382, 948
BspMAI CTGCAG 1 cut(s) 585
BspMI ACCTGC 1 cut(s) 809
BspPI GGATC 6 cut(s) 31, 258, 301, 480, 600, 750
BspT107I GGYRCC 1 cut(s) 355
BsrDI GCAATG 2 cut(s) 215, 327
BsrFI RCCGGY 3 cut(s) 105, 314, 605
BsrGI TGTACA 1 cut(s) 664
BsrI ACTGG 3 cut(s) 89, 546, 641
BssAI RCCGGY 3 cut(s) 105, 314, 605
BssECI CCNNGG 2 cut(s) 99, 738
BssMI GATC 9 cut(s) 36, 117, 263, 293, 472, 592, 742, 900, 1020
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 2 cut(s) 739, 1031
Bst4CI ACNGT 2 cut(s) 430, 730
Bst6I CTCTTC 1 cut(s) 151
BstAUI TGTACA 1 cut(s) 664
BstBAI YACGTR 2 cut(s) 304, 884
BstC8I GCNNGC 1 cut(s) 509
BstDEI CTNAG 6 cut(s) 22, 249, 479, 621, 746, 909
BstF5I GGATG 3 cut(s) 403, 412, 682
BstFNI CGCG 3 cut(s) 226, 281, 341
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 2 cut(s) 19, 320
BstKTI GATC 9 cut(s) 39, 120, 266, 296, 475, 595, 745, 903, 1023
BstMAI GTCTC 2 cut(s) 97, 1011
BstMBI GATC 9 cut(s) 36, 117, 263, 293, 472, 592, 742, 900, 1020
BstMWI GCNNNNNNNGC 5 cut(s) 25, 119, 355, 536, 760
BstNI CCWGG 2 cut(s) 739, 1031
BstSCI CCNGG 2 cut(s) 737, 1029
BstSFI CTRYAG 4 cut(s) 153, 581, 1024, 1044
BstSLI GKGCMC 1 cut(s) 360
BstUI CGCG 3 cut(s) 226, 281, 341
BstV1I GCAGC 1 cut(s) 516
BstX2I RGATCY 3 cut(s) 36, 263, 742
BstYI RGATCY 3 cut(s) 36, 263, 742
BsuRI GGCC 5 cut(s) 113, 245, 275, 754, 1063
BtsCI GGATG 3 cut(s) 403, 412, 682
BtsI GCAGTG 1 cut(s) 590
BtsIMutI CAGTG 3 cut(s) 426, 553, 590
BtuMI TCGCGA 1 cut(s) 226
BveI ACCTGC 1 cut(s) 809
Cac8I GCNNGC 1 cut(s) 509
CfoI GCGC 2 cut(s) 19, 320
Cfr10I RCCGGY 3 cut(s) 105, 314, 605
Cfr13I GGNCC 2 cut(s) 103, 325
CseI GACGC 3 cut(s) 224, 292, 330
Csp6I GTAC 2 cut(s) 665, 726
CspAI ACCGGT 2 cut(s) 105, 605
CviAII CATG 3 cut(s) 374, 810, 1065
CviQI GTAC 2 cut(s) 665, 726
DdeI CTNAG 6 cut(s) 22, 249, 479, 621, 746, 909
DpnI GATC 9 cut(s) 38, 119, 265, 295, 474, 594, 744, 902, 1022
DpnII GATC 9 cut(s) 36, 117, 263, 293, 472, 592, 742, 900, 1020
DriI GACNNNNNGTC 1 cut(s) 1003
EaeI YGGCCR 3 cut(s) 111, 273, 752
Eam1104I CTCTTC 1 cut(s) 151
Eam1105I GACNNNNNGTC 1 cut(s) 1003
EarI CTCTTC 1 cut(s) 151
EciI GGCGGA 1 cut(s) 85
Ecl136II GAGCTC 1 cut(s) 958
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 960
Eco47I GGWCC 2 cut(s) 103, 325
Eco47III AGCGCT 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 958
Eco57I CTGAAG 1 cut(s) 639
Eco72I CACGTG 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 359
EcoICRI GAGCTC 1 cut(s) 958
EcoRI GAATTC 1 cut(s) 918
EcoRII CCWGG 2 cut(s) 737, 1029
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 960
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 3 cut(s) 377, 813, 1068
FalI AAGNNNNNCTT 4 cut(s) 637, 669, 862, 894
FaqI GGGAC 1 cut(s) 227
FatI CATG 3 cut(s) 373, 809, 1064
FauI CCCGC 1 cut(s) 500
FblI GTMKAC 1 cut(s) 857
Fnu4HI GCNGC 3 cut(s) 276, 279, 505
FokI GGATG 3 cut(s) 410, 419, 669
FriOI GRGCYC 1 cut(s) 960
Fsp4HI GCNGC 3 cut(s) 276, 279, 505
FspBI CTAG 1 cut(s) 269
GlaI GCGC 2 cut(s) 18, 319
GluI GCNGC 3 cut(s) 276, 279, 505
GsuI CTGGAG 1 cut(s) 1052
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 5 cut(s) 113, 245, 275, 754, 1063
HapII CCGG 5 cut(s) 76, 106, 315, 561, 606
HgaI GACGC 3 cut(s) 224, 292, 330
HhaI GCGC 2 cut(s) 19, 320
Hin1II CATG 3 cut(s) 377, 813, 1068
Hin6I GCGC 2 cut(s) 17, 318
HinP1I GCGC 2 cut(s) 17, 318
HinfI GANTC 6 cut(s) 45, 68, 131, 143, 640, 1040
HpaII CCGG 5 cut(s) 76, 106, 315, 561, 606
HphI GGTGA 8 cut(s) 16, 163, 177, 304, 460, 644, 803, 953
Hpy166II GTNNAC 2 cut(s) 522, 858
Hpy188I TCNGA 8 cut(s) 25, 136, 195, 334, 346, 597, 910, 1015
Hpy188III TCNNGA 4 cut(s) 225, 291, 690, 1054
Hpy8I GTNNAC 2 cut(s) 522, 858
Hpy99I CGWCG 2 cut(s) 286, 346
HpyAV CCTTC 3 cut(s) 209, 339, 358
HpyCH4III ACNGT 2 cut(s) 430, 730
HpyCH4IV ACGT 3 cut(s) 303, 864, 883
HpyCH4V TGCA 3 cut(s) 373, 583, 977
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 119, 355, 536, 760
HpyF3I CTNAG 6 cut(s) 22, 249, 479, 621, 746, 909
HpySE526I ACGT 3 cut(s) 303, 864, 883
Hsp92II CATG 3 cut(s) 377, 813, 1068
HspAI GCGC 2 cut(s) 17, 318
Kzo9I GATC 9 cut(s) 36, 117, 263, 293, 472, 592, 742, 900, 1020
LmnI GCTCC 2 cut(s) 346, 380
Lsp1109I GCAGC 1 cut(s) 516
LweI GCATC 1 cut(s) 548
MaeI CTAG 1 cut(s) 269
MaeII ACGT 3 cut(s) 303, 864, 883
MaeIII GTNAC 2 cut(s) 424, 632
MalI GATC 9 cut(s) 38, 119, 265, 295, 474, 594, 744, 902, 1022
MboI GATC 9 cut(s) 36, 117, 263, 293, 472, 592, 742, 900, 1020
MboII GAAGA 4 cut(s) 138, 449, 645, 870
MflI RGATCY 3 cut(s) 36, 263, 742
MhlI GDGCHC 2 cut(s) 360, 960
MlsI TGGCCA 1 cut(s) 754
MluCI AATT 3 cut(s) 58, 228, 918
MluNI TGGCCA 1 cut(s) 754
MlyI GAGTC 3 cut(s) 62, 125, 137
MmeI TCCRAC 1 cut(s) 324
Mox20I TGGCCA 1 cut(s) 754
MroXI GAANNNNTTC 1 cut(s) 874
MscI TGGCCA 1 cut(s) 754
Msp20I TGGCCA 1 cut(s) 754
MspA1I CMGCKG 2 cut(s) 478, 507
MspI CCGG 5 cut(s) 76, 106, 315, 561, 606
MspR9I CCNGG 2 cut(s) 739, 1031
MvaI CCWGG 2 cut(s) 739, 1031
MvnI CGCG 3 cut(s) 226, 281, 341
MwoI GCNNNNNNNGC 5 cut(s) 25, 119, 355, 536, 760
NdeII GATC 9 cut(s) 36, 117, 263, 293, 472, 592, 742, 900, 1020
NlaIII CATG 3 cut(s) 377, 813, 1068
NlaIV GGNNCC 4 cut(s) 327, 357, 382, 948
NmeAIII GCCGAG 1 cut(s) 941
NmuCI GTSAC 2 cut(s) 424, 632
NruI TCGCGA 1 cut(s) 226
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 338
PdmI GAANNNNTTC 1 cut(s) 874
PfeI GAWTC 3 cut(s) 45, 640, 1040
PflFI GACNNNGTC 1 cut(s) 71
PinAI ACCGGT 2 cut(s) 105, 605
PkrI GCNGC 3 cut(s) 277, 280, 506
PleI GAGTC 3 cut(s) 62, 125, 137
PmaCI CACGTG 1 cut(s) 304
PmlI CACGTG 1 cut(s) 304
PpsI GAGTC 3 cut(s) 62, 125, 137
Ppu21I YACGTR 2 cut(s) 304, 884
Psp124BI GAGCTC 1 cut(s) 960
Psp6I CCWGG 2 cut(s) 737, 1029
PspCI CACGTG 1 cut(s) 304
PspGI CCWGG 2 cut(s) 737, 1029
PspN4I GGNNCC 4 cut(s) 327, 357, 382, 948
PspPI GGNCC 2 cut(s) 103, 325
PstI CTGCAG 1 cut(s) 585
PsuI RGATCY 3 cut(s) 36, 263, 742
PsyI GACNNNGTC 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 478
RruI TCGCGA 1 cut(s) 226
RsaI GTAC 2 cut(s) 666, 727
RsaNI GTAC 2 cut(s) 665, 726
SacI GAGCTC 1 cut(s) 960
SatI GCNGC 3 cut(s) 276, 279, 505
Sau3AI GATC 9 cut(s) 36, 117, 263, 293, 472, 592, 742, 900, 1020
Sau96I GGNCC 2 cut(s) 103, 325
SchI GAGTC 3 cut(s) 62, 125, 137
ScrFI CCNGG 2 cut(s) 739, 1031
SduI GDGCHC 2 cut(s) 360, 960
SfaNI GCATC 1 cut(s) 548
SfcI CTRYAG 4 cut(s) 153, 581, 1024, 1044
SgrAI CRCCGGYG 1 cut(s) 314
SinI GGWCC 2 cut(s) 103, 325
Sse9I AATT 3 cut(s) 58, 228, 918
SsiI CCGC 5 cut(s) 96, 276, 279, 507, 614
SspMI CTAG 1 cut(s) 269
SstI GAGCTC 1 cut(s) 960
StyD4I CCNGG 2 cut(s) 737, 1029
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 2 cut(s) 430, 730
TaiI ACGT 3 cut(s) 306, 867, 886
TaqI TCGA 3 cut(s) 129, 498, 689
TasI AATT 3 cut(s) 58, 228, 918
TatI WGTACW 1 cut(s) 664
TauI GCSGC 2 cut(s) 278, 281
TfiI GAWTC 3 cut(s) 45, 640, 1040
TscAI CASTG 3 cut(s) 433, 553, 590
TseFI GTSAC 2 cut(s) 424, 632
TseI GCWGC 1 cut(s) 504
Tsp45I GTSAC 2 cut(s) 424, 632
TspDTI ATGAA 2 cut(s) 191, 671
TspGWI ACGGA 2 cut(s) 61, 930
TspRI CASTG 3 cut(s) 433, 553, 590
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 2 cut(s) 103, 325
XapI RAATTY 2 cut(s) 228, 918
XmiI GTMKAC 1 cut(s) 857
XmnI GAANNNNTTC 1 cut(s) 874
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.