Rh4BG127000

Nucleoporin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0011206
Physical Location & Seq
Forward (+)
21203502 .. 21206801
3300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG127000.1

Sequence Viewer

Length: 768 bp
ATGGCAATAGGCACAGCACTCTCAGAGCCTCCCAAAATCCACAGATTCCCACAATCCAAGTACATAGACTCCGTCCGGTGGCTGCCTACTAGCTCAGCCTTGGACCGGTTGGCCGTGATCGCGGTTTTCGACTCGGATTCGGACTCTTCCTCCATACAAATCCACTCTTTCACCCAAGACCCATCACCAAATCTAACCCCCGACTCGCAATGGGACTCACCCTCGCGAGTTTCCTCTCTCACGGCGTCTCAATTCAAGCACAAGTCCCTCGTGGCCGCCGCAGCGTTTTCGGGTTCGCTTCACGTCTTGCTCACCGATGCAGTGGACCCTTCGTCGTTTGAATCGGAGCTTTCGTTGCCCGAAAAGGCATTGCATGATGGGCCCATTTCTTGTGTGGATGTGATGGATGGTGGGCTTGAGTGTGTCACTGTTGGGGAAGATGGGAGGGTCAATCTAGTCAGTTTGGGGGAGTCTGAGCTCAGCTATAGGAGGATTTTCGATAGCAGTGGGTTGGTTTCGTTTACTTCGGCGAAATGGGCATCGCCGAGTGAGTTTGCTACTGGAGGATTTGGGTTTAGTCTGCAGTGGTGGGATCAGAGAAAGCCTGGTGGGGCGGTTTCTCAGTTCAAGGGTGACTGGAATCAAAGAAAAGCTTCCGGGATTGTACATTCCATTGATATTCATCCATCAAGAAAGCACACTTGTCTGGTAATGTGGTTATGCTGTTCTTCAATACTTCCATTTGACATTAAATTGGTTGCGCTTTAG

Protein Analysis

255

Amino Acids

27.67

Weight (kDa)

5.56

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30840
fragaria_vesca FvH4_4g09770 FvH4_4g09770 FvH4_4g09770
malus_domestica MD10G1281400.v1.1
prunus_persica Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1
pyrus_communis pycom10g23530
rosa_chinensis RchiOBHm_Chr4g0405491
rosa_laevigata RLG00000008840
rosa_multiflora Rmu_co8147422.1_g000001
rosa_roxburghii Rroxscaffold_5G00349930
rosa_rugosa Rorug04G0060500 Rorug04G0060600
rosa_samantha Rh4AG132200 Rh4BG127000 Rh4CG139700 Rh4DG126300
rosa_wichuraiana Rw4G010700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 122, 226
AciI CCGC 4 cut(s) 122, 276, 279, 614
AclWI GGATC 1 cut(s) 600
AcoI YGGCCR 2 cut(s) 111, 273
AcyI GRCGYC 1 cut(s) 245
AfaI GTAC 2 cut(s) 62, 666
AfiI CCNNNNNNNGG 2 cut(s) 78, 105
AgeI ACCGGT 1 cut(s) 105
AgsI TTSAA 4 cut(s) 256, 341, 628, 732
AhdI GACNNNNNGTC 1 cut(s) 331
AjiI CACGTC 1 cut(s) 304
AjnI CCWGG 1 cut(s) 604
AluBI AGCT 5 cut(s) 93, 349, 478, 483, 653
AluI AGCT 5 cut(s) 93, 349, 478, 483, 653
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 1 cut(s) 600
AoxI GGCC 3 cut(s) 111, 273, 380
ApaI GGGCCC 1 cut(s) 384
ApeKI GCWGC 2 cut(s) 82, 281
AsiGI ACCGGT 1 cut(s) 105
Asp700I GAANNNNTTC 1 cut(s) 652
AspLEI GCGC 1 cut(s) 763
AspS9I GGNCC 4 cut(s) 103, 325, 380, 381
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 5 cut(s) 163, 177, 210, 304, 644
AvaII GGWCC 2 cut(s) 103, 325
BaeGI GKGCMC 1 cut(s) 384
BanII GRGCYC 2 cut(s) 384, 480
BauI CACGAG 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 2 cut(s) 69, 293
BccI CCATC 6 cut(s) 190, 371, 397, 401, 434, 694
BceAI ACGGC 2 cut(s) 98, 258
BcgI CGANNNNNNTGC 2 cut(s) 270, 304
BciT130I CCWGG 1 cut(s) 606
BcnI CCSGG 1 cut(s) 658
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 2 cut(s) 90, 455
BfmI CTRYAG 2 cut(s) 484, 581
BisI GCNGC 4 cut(s) 83, 276, 279, 282
BlpI GCTNAGC 2 cut(s) 94, 479
BlsI GCNGC 4 cut(s) 84, 277, 280, 283
Bme1390I CCNGG 2 cut(s) 606, 658
Bme18I GGWCC 2 cut(s) 103, 325
BmeRI GACNNNNNGTC 1 cut(s) 331
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 4 cut(s) 103, 325, 380, 381
BmiI GGNNCC 2 cut(s) 327, 382
BmrFI CCNGG 2 cut(s) 606, 658
BmsI GCATC 2 cut(s) 307, 548
BpmI CTGGAG 1 cut(s) 582
Bpu1102I GCTNAGC 2 cut(s) 94, 479
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 658
BsaBI GATNNNNATC 1 cut(s) 681
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 2 cut(s) 75, 105
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 134, 164, 338, 368
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 105
Bse118I RCCGGY 1 cut(s) 105
Bse1I ACTGG 2 cut(s) 565, 641
Bse3DI GCAATG 2 cut(s) 215, 368
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 3 cut(s) 403, 412, 682
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 2 cut(s) 78, 105
BseMI GCAATG 2 cut(s) 215, 368
BseMII CTCAG 5 cut(s) 36, 108, 465, 493, 635
BseNI ACTGG 2 cut(s) 565, 641
BseSI GKGCMC 1 cut(s) 384
BseXI GCAGC 2 cut(s) 69, 293
Bsh1236I CGCG 2 cut(s) 122, 226
BshFI GGCC 3 cut(s) 113, 275, 382
BshTI ACCGGT 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 480
BsiSI CCGG 3 cut(s) 76, 106, 657
BslFI GGGAC 2 cut(s) 227, 250
BslI CCNNNNNNNGG 2 cut(s) 78, 105
BsmAI GTCTC 1 cut(s) 252
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 2 cut(s) 227, 250
BsnI GGCC 3 cut(s) 113, 275, 382
Bsp120I GGGCCC 1 cut(s) 380
Bsp1286I GDGCHC 2 cut(s) 384, 480
Bsp1407I TGTACA 1 cut(s) 664
Bsp143I GATC 2 cut(s) 117, 592
Bsp1720I GCTNAGC 2 cut(s) 94, 479
Bsp68I TCGCGA 1 cut(s) 226
BspACI CCGC 4 cut(s) 122, 276, 279, 614
BspANI GGCC 3 cut(s) 113, 275, 382
BspCNI CTCAG 5 cut(s) 35, 107, 466, 492, 634
BspFNI CGCG 2 cut(s) 122, 226
BspLI GGNNCC 2 cut(s) 327, 382
BspMAI CTGCAG 1 cut(s) 585
BspPI GGATC 1 cut(s) 600
BsrDI GCAATG 2 cut(s) 215, 368
BsrFI RCCGGY 1 cut(s) 105
BsrGI TGTACA 1 cut(s) 664
BsrI ACTGG 2 cut(s) 565, 641
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 2 cut(s) 117, 592
BssNI GRCGYC 1 cut(s) 245
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 1 cut(s) 430
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 245
BstAUI TGTACA 1 cut(s) 664
BstDEI CTNAG 5 cut(s) 22, 94, 474, 479, 621
BstF5I GGATG 3 cut(s) 403, 412, 682
BstFNI CGCG 2 cut(s) 122, 226
BstHHI GCGC 1 cut(s) 763
BstKTI GATC 2 cut(s) 120, 595
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 2 cut(s) 117, 592
BstMWI GCNNNNNNNGC 5 cut(s) 119, 281, 355, 379, 536
BstNI CCWGG 1 cut(s) 606
BstSCI CCNGG 2 cut(s) 604, 656
BstSFI CTRYAG 2 cut(s) 484, 581
BstSLI GKGCMC 1 cut(s) 384
BstUI CGCG 2 cut(s) 122, 226
BstV1I GCAGC 2 cut(s) 69, 293
BsuRI GGCC 3 cut(s) 113, 275, 382
BtgZI GCGATG 1 cut(s) 525
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 3 cut(s) 403, 412, 682
BtsI GCAGTG 3 cut(s) 327, 511, 590
BtsIMutI CAGTG 4 cut(s) 327, 426, 511, 590
BtuMI TCGCGA 1 cut(s) 226
CfoI GCGC 1 cut(s) 763
Cfr10I RCCGGY 1 cut(s) 105
Cfr13I GGNCC 4 cut(s) 103, 325, 380, 381
CseI GACGC 1 cut(s) 234
Csp6I GTAC 2 cut(s) 61, 665
CspAI ACCGGT 1 cut(s) 105
CviAII CATG 1 cut(s) 374
CviQI GTAC 2 cut(s) 61, 665
DdeI CTNAG 5 cut(s) 22, 94, 474, 479, 621
DpnI GATC 2 cut(s) 119, 594
DpnII GATC 2 cut(s) 117, 592
DriI GACNNNNNGTC 1 cut(s) 331
EaeI YGGCCR 2 cut(s) 111, 273
Eam1104I CTCTTC 1 cut(s) 151
Eam1105I GACNNNNNGTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 478
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 2 cut(s) 384, 480
Eco47I GGWCC 2 cut(s) 103, 325
Eco53kI GAGCTC 1 cut(s) 478
EcoICRI GAGCTC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 604
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 2 cut(s) 384, 480
ErhI CCWWGG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 1 cut(s) 377
FaiI YATR 5 cut(s) 65, 155, 375, 486, 721
FalI AAGNNNNNCTT 2 cut(s) 637, 669
FaqI GGGAC 2 cut(s) 227, 250
FatI CATG 1 cut(s) 373
Fnu4HI GCNGC 4 cut(s) 83, 276, 279, 282
FokI GGATG 3 cut(s) 410, 419, 669
FriOI GRGCYC 2 cut(s) 384, 480
Fsp4HI GCNGC 4 cut(s) 83, 276, 279, 282
FspBI CTAG 2 cut(s) 90, 455
GlaI GCGC 1 cut(s) 762
GluI GCNGC 4 cut(s) 83, 276, 279, 282
GsuI CTGGAG 1 cut(s) 582
HaeIII GGCC 3 cut(s) 113, 275, 382
HapII CCGG 3 cut(s) 76, 106, 657
HgaI GACGC 1 cut(s) 234
HhaI GCGC 1 cut(s) 763
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 1 cut(s) 377
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HindIII AAGCTT 1 cut(s) 651
HpaII CCGG 3 cut(s) 76, 106, 657
HphI GGTGA 5 cut(s) 163, 177, 210, 304, 644
Hpy166II GTNNAC 2 cut(s) 325, 522
Hpy188I TCNGA 6 cut(s) 25, 136, 142, 346, 475, 597
Hpy188III TCNNGA 2 cut(s) 225, 690
Hpy8I GTNNAC 2 cut(s) 325, 522
Hpy99I CGWCG 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 339
HpyCH4III ACNGT 1 cut(s) 430
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 3 cut(s) 320, 373, 583
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 281, 355, 379, 536
HpyF3I CTNAG 5 cut(s) 22, 94, 474, 479, 621
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 1 cut(s) 377
HspAI GCGC 1 cut(s) 761
Kzo9I GATC 2 cut(s) 117, 592
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 8 cut(s) 89, 119, 546, 591, 618, 622, 670, 692
Lsp1109I GCAGC 2 cut(s) 69, 293
LweI GCATC 2 cut(s) 307, 548
MaeI CTAG 2 cut(s) 90, 455
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 424, 632
MalI GATC 2 cut(s) 119, 594
MboI GATC 2 cut(s) 117, 592
MboII GAAGA 3 cut(s) 138, 449, 720
MhlI GDGCHC 2 cut(s) 384, 480
MluCI AATT 2 cut(s) 251, 752
MlyI GAGTC 6 cut(s) 62, 125, 137, 197, 209, 479
MnlI CCTC 8 cut(s) 39, 160, 232, 244, 278, 438, 483, 557
MroXI GAANNNNTTC 1 cut(s) 652
MseI TTAA 1 cut(s) 750
MspI CCGG 3 cut(s) 76, 106, 657
MspR9I CCNGG 2 cut(s) 606, 658
MvaI CCWGG 1 cut(s) 606
MvnI CGCG 2 cut(s) 122, 226
MwoI GCNNNNNNNGC 5 cut(s) 119, 281, 355, 379, 536
NciI CCSGG 1 cut(s) 658
NdeII GATC 2 cut(s) 117, 592
NlaIII CATG 1 cut(s) 377
NlaIV GGNNCC 2 cut(s) 327, 382
NmeAIII GCCGAG 1 cut(s) 570
NmuCI GTSAC 2 cut(s) 424, 632
NruI TCGCGA 1 cut(s) 226
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 350
PdmI GAANNNNTTC 1 cut(s) 652
PfeI GAWTC 4 cut(s) 45, 137, 341, 640
PflFI GACNNNGTC 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 656
PinAI ACCGGT 1 cut(s) 105
PkrI GCNGC 4 cut(s) 84, 277, 280, 283
PleI GAGTC 6 cut(s) 62, 125, 137, 197, 209, 478
PpsI GAGTC 6 cut(s) 62, 125, 137, 197, 209, 478
Psp124BI GAGCTC 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 2 cut(s) 327, 382
PspOMI GGGCCC 1 cut(s) 380
PspPI GGNCC 4 cut(s) 103, 325, 380, 381
PstI CTGCAG 1 cut(s) 585
PsyI GACNNNGTC 1 cut(s) 71
RruI TCGCGA 1 cut(s) 226
RsaI GTAC 2 cut(s) 62, 666
RsaNI GTAC 2 cut(s) 61, 665
SacI GAGCTC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 750
SatI GCNGC 4 cut(s) 83, 276, 279, 282
Sau3AI GATC 2 cut(s) 117, 592
Sau96I GGNCC 4 cut(s) 103, 325, 380, 381
SchI GAGTC 6 cut(s) 62, 125, 137, 197, 209, 479
ScrFI CCNGG 2 cut(s) 606, 658
SduI GDGCHC 2 cut(s) 384, 480
SetI ASST 6 cut(s) 95, 306, 351, 480, 485, 655
SfaNI GCATC 2 cut(s) 307, 548
SfcI CTRYAG 2 cut(s) 484, 581
SinI GGWCC 2 cut(s) 103, 325
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 2 cut(s) 251, 752
SsiI CCGC 4 cut(s) 122, 276, 279, 614
SspMI CTAG 2 cut(s) 90, 455
SstI GAGCTC 1 cut(s) 480
StyD4I CCNGG 2 cut(s) 604, 656
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 430
TaiI ACGT 1 cut(s) 306
TaqI TCGA 2 cut(s) 129, 498
TasI AATT 2 cut(s) 251, 752
TatI WGTACW 2 cut(s) 60, 664
TauI GCSGC 2 cut(s) 278, 281
TfiI GAWTC 4 cut(s) 45, 137, 341, 640
Tru1I TTAA 1 cut(s) 750
Tru9I TTAA 1 cut(s) 750
TscAI CASTG 4 cut(s) 327, 433, 511, 590
TseFI GTSAC 2 cut(s) 424, 632
TseI GCWGC 2 cut(s) 82, 281
Tsp45I GTSAC 2 cut(s) 424, 632
TspDTI ATGAA 1 cut(s) 671
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 4 cut(s) 327, 433, 511, 590
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 2 cut(s) 103, 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmnI GAANNNNTTC 1 cut(s) 652
XspI CTAG 2 cut(s) 90, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.