Rorug04G0060500

Nucleoporin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011206
Physical Location & Seq
Reverse (-)
9458435 .. 9459364
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0060500.1

Sequence Viewer

Length: 930 bp
ATGAATGCTGTCTTGTGTGGTGGACATTGGATTTTGGCTGGCCAAACTCTGATTGTGAGAAAATGGAATCCTGATTTTGATCCTATGAATGAAGTAATTGGGAAAATGGCTCTATGGGTCAGGATTTGTGGTTTGCCAGTCAAGTACTTTAAGGATTACACTGTTGCTAAGATTGGCAAAATCTTGGGGGATGTGGTTAAGGTTGATCAGGTCACCATTGGCCAGGCTAGAGGTAAATTTGCGCGGGTCTGTATTGAAGTTGACTTGAGTAAACCTTTGCGTCCTTATGTTGAAGTTGAATCTGTGGCGTATAATGTTATCTATGAAGGAATTTCCTTGATTTGCTTCGAGTGTGGATGCTTTGGCCACTCTAAAGACAAATGCCCTATTGTGTTTGATGTGTCTCCTGCTCCTCCACATGGTGATGGTCCTAACTGTGGTAACAATGATCAGACCTTGGCTCCTATTGAGAATTGTGTCATGCAGCATGAGATGGATACTCCTCAATCTTCTTCTTCTGTGATTAAAGAAGATATGGGCCCTTGGATGCTTATGAATTACAGAAACAAAAAGAAAAATGATACTAGTGGAGCAAAGAAAAGTGTGAGTAAGGGTTCTAGGTTTACTGTGCTGCAGGATGATGATGCTAACGTTTCAAATGAAAATGAGACTATAGTTGACAATGATACCAAATCTGCCACTCCTTCTATTGTGAAACTCTGGACAAATTTCCAAGATAAGAAAAAGAAGCTCTCTAAACTTAGCTCTGCTAAACTTGGTACTGTGACAGATACAAAAACTCCTAACTCTAGTTCCCTGCGTGGAACTTGTTTGGCTCCAATTTTTGTTGCAGCTGGTCAACAGTCTCTTTTCTGCGCGGGCGTGCCAGCACCGTTCGGGTGCGGTCGTCGGGGGTGTCCCTTGACCTGA

Protein Analysis

309

Amino Acids

33.69

Weight (kDa)

8.61

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30840
fragaria_vesca FvH4_4g09770 FvH4_4g09770 FvH4_4g09770
malus_domestica MD10G1281400.v1.1
prunus_persica Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1
pyrus_communis pycom10g23530
rosa_chinensis RchiOBHm_Chr4g0405491
rosa_laevigata RLG00000008840
rosa_multiflora Rmu_co8147422.1_g000001
rosa_roxburghii Rroxscaffold_5G00349930
rosa_rugosa Rorug04G0060500 Rorug04G0060600
rosa_samantha Rh4AG132200 Rh4BG127000 Rh4CG139700 Rh4DG126300
rosa_wichuraiana Rw4G010700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 244, 878
AciI CCGC 3 cut(s) 244, 878, 903
AclI AACGTT 1 cut(s) 651
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 3 cut(s) 40, 220, 364
AcsI RAATTY 3 cut(s) 236, 330, 727
AdeI CACNNNGTG 1 cut(s) 422
AfaI GTAC 2 cut(s) 146, 781
AfiI CCNNNNNNNGG 2 cut(s) 419, 437
AgsI TTSAA 4 cut(s) 257, 293, 299, 657
AhlI ACTAGT 1 cut(s) 584
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 3 cut(s) 751, 765, 854
AluI AGCT 3 cut(s) 751, 765, 854
Alw26I GTCTC 3 cut(s) 408, 662, 870
AlwI GGATC 1 cut(s) 74
AoxI GGCC 4 cut(s) 40, 220, 364, 538
ApaI GGGCCC 1 cut(s) 542
ApeKI GCWGC 3 cut(s) 484, 631, 851
ApoI RAATTY 3 cut(s) 236, 330, 727
AspLEI GCGC 2 cut(s) 244, 878
AspS9I GGNCC 3 cut(s) 428, 538, 539
AsuHPI GGTGA 2 cut(s) 205, 434
AvaII GGWCC 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 542
BalI TGGCCA 3 cut(s) 42, 222, 366
BanII GRGCYC 1 cut(s) 542
BbvI GCAGC 3 cut(s) 496, 618, 863
BccI CCATC 2 cut(s) 419, 487
BciT130I CCWGG 1 cut(s) 224
BciVI GTATCC 1 cut(s) 490
BclI TGATCA 2 cut(s) 205, 448
BcoDI GTCTC 3 cut(s) 408, 662, 870
BcuI ACTAGT 1 cut(s) 584
BfaI CTAG 4 cut(s) 228, 585, 618, 810
BfmI CTRYAG 2 cut(s) 632, 672
BfuI GTATCC 1 cut(s) 490
BisI GCNGC 3 cut(s) 485, 632, 852
BlsI GCNGC 3 cut(s) 486, 633, 853
BmcAI AGTACT 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 428
BmgT120I GGNCC 3 cut(s) 428, 538, 539
BmiI GGNNCC 3 cut(s) 462, 540, 837
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 3 cut(s) 347, 537, 634
BpuEI CTTGAG 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 456, 542
BsaXI ACNNNNNCTCC 4 cut(s) 445, 475, 784, 814
Bsc4I CCNNNNNNNGG 2 cut(s) 419, 437
Bse1I ACTGG 1 cut(s) 137
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 2 cut(s) 456, 542
BseGI GGATG 4 cut(s) 196, 362, 552, 643
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 419, 437
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 2 cut(s) 402, 492
BseSI GKGCMC 1 cut(s) 542
BseXI GCAGC 3 cut(s) 496, 618, 863
Bsh1236I CGCG 2 cut(s) 244, 878
Bsh1285I CGRYCG 1 cut(s) 907
BshFI GGCC 4 cut(s) 42, 222, 366, 540
BsiEI CGRYCG 1 cut(s) 907
BslFI GGGAC 1 cut(s) 903
BslI CCNNNNNNNGG 2 cut(s) 419, 437
BsmAI GTCTC 3 cut(s) 408, 662, 870
BsmFI GGGAC 1 cut(s) 903
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 4 cut(s) 42, 222, 366, 540
Bsp120I GGGCCC 1 cut(s) 538
Bsp1286I GDGCHC 1 cut(s) 542
Bsp143I GATC 3 cut(s) 79, 205, 448
BspACI CCGC 3 cut(s) 244, 878, 903
BspANI GGCC 4 cut(s) 42, 222, 366, 540
BspFNI CGCG 2 cut(s) 244, 878
BspLI GGNNCC 3 cut(s) 462, 540, 837
BspMAI CTGCAG 1 cut(s) 636
BspPI GGATC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 456, 542
BssMI GATC 3 cut(s) 79, 205, 448
BssT1I CCWWGG 2 cut(s) 456, 542
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 6 cut(s) 163, 437, 628, 784, 864, 894
BstC8I GCNNGC 4 cut(s) 40, 880, 884, 888
BstDEI CTNAG 2 cut(s) 168, 761
BstEII GGTNACC 1 cut(s) 211
BstF5I GGATG 4 cut(s) 196, 362, 552, 643
BstFNI CGCG 2 cut(s) 244, 878
BstHHI GCGC 2 cut(s) 244, 878
BstKTI GATC 3 cut(s) 82, 208, 451
BstMAI GTCTC 3 cut(s) 408, 662, 870
BstMBI GATC 3 cut(s) 79, 205, 448
BstMCI CGRYCG 1 cut(s) 907
BstNI CCWGG 1 cut(s) 224
BstPI GGTNACC 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 2 cut(s) 632, 672
BstSLI GKGCMC 1 cut(s) 542
BstUI CGCG 2 cut(s) 244, 878
BstV1I GCAGC 3 cut(s) 496, 618, 863
BsuI GTATCC 1 cut(s) 490
BsuRI GGCC 4 cut(s) 42, 222, 366, 540
BtsCI GGATG 4 cut(s) 196, 362, 552, 643
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 4 cut(s) 40, 880, 884, 888
CfoI GCGC 2 cut(s) 244, 878
Cfr13I GGNCC 3 cut(s) 428, 538, 539
CseI GACGC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 145, 780
CviAII CATG 3 cut(s) 419, 481, 488
CviQI GTAC 2 cut(s) 145, 780
DdeI CTNAG 2 cut(s) 168, 761
DpnI GATC 3 cut(s) 81, 207, 450
DpnII GATC 3 cut(s) 79, 205, 448
DraIII CACNNNGTG 1 cut(s) 422
EaeI YGGCCR 3 cut(s) 40, 220, 364
Eco130I CCWWGG 2 cut(s) 456, 542
Eco24I GRGCYC 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 428
Eco91I GGTNACC 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 539
EcoO65I GGTNACC 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 2 cut(s) 456, 542
EcoT38I GRGCYC 1 cut(s) 542
ErhI CCWWGG 2 cut(s) 456, 542
FaeI CATG 3 cut(s) 422, 484, 491
FaqI GGGAC 1 cut(s) 903
FatI CATG 3 cut(s) 418, 480, 487
FauI CCCGC 2 cut(s) 237, 871
FbaI TGATCA 2 cut(s) 205, 448
Fnu4HI GCNGC 3 cut(s) 485, 632, 852
FokI GGATG 4 cut(s) 203, 369, 559, 650
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 3 cut(s) 485, 632, 852
FspBI CTAG 4 cut(s) 228, 585, 618, 810
GlaI GCGC 2 cut(s) 243, 877
GluI GCNGC 3 cut(s) 485, 632, 852
HaeIII GGCC 4 cut(s) 42, 222, 366, 540
HgaI GACGC 1 cut(s) 269
HhaI GCGC 2 cut(s) 244, 878
Hin1II CATG 3 cut(s) 422, 484, 491
Hin6I GCGC 2 cut(s) 242, 876
HinP1I GCGC 2 cut(s) 242, 876
HincII GTYRAC 3 cut(s) 262, 679, 860
HindII GTYRAC 3 cut(s) 262, 679, 860
HinfI GANTC 2 cut(s) 67, 299
HphI GGTGA 2 cut(s) 205, 434
Hpy166II GTNNAC 6 cut(s) 23, 262, 272, 624, 679, 860
Hpy188I TCNGA 2 cut(s) 51, 453
Hpy188III TCNNGA 3 cut(s) 71, 121, 721
Hpy8I GTNNAC 6 cut(s) 23, 262, 272, 624, 679, 860
Hpy99I CGWCG 1 cut(s) 912
HpyAV CCTTC 2 cut(s) 320, 714
HpyCH4III ACNGT 6 cut(s) 163, 437, 628, 784, 864, 894
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 3 cut(s) 484, 634, 851
HpyF3I CTNAG 2 cut(s) 168, 761
HpySE526I ACGT 1 cut(s) 651
Hsp92II CATG 3 cut(s) 422, 484, 491
HspAI GCGC 2 cut(s) 242, 876
Ksp22I TGATCA 2 cut(s) 205, 448
Kzo9I GATC 3 cut(s) 79, 205, 448
LmnI GCTCC 4 cut(s) 415, 466, 590, 841
Lsp1109I GCAGC 3 cut(s) 496, 618, 863
LweI GCATC 3 cut(s) 347, 537, 634
MaeI CTAG 4 cut(s) 228, 585, 618, 810
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 3 cut(s) 211, 440, 784
MalI GATC 3 cut(s) 81, 207, 450
MboI GATC 3 cut(s) 79, 205, 448
MboII GAAGA 4 cut(s) 501, 504, 507, 542
MhlI GDGCHC 1 cut(s) 542
MlsI TGGCCA 3 cut(s) 42, 222, 366
MluCI AATT 7 cut(s) 96, 236, 330, 472, 556, 727, 840
MluNI TGGCCA 3 cut(s) 42, 222, 366
MnlI CCTC 3 cut(s) 224, 423, 513
Mox20I TGGCCA 3 cut(s) 42, 222, 366
MscI TGGCCA 3 cut(s) 42, 222, 366
MseI TTAA 3 cut(s) 150, 198, 525
MslI CAYNNNNRTG 1 cut(s) 423
Msp20I TGGCCA 3 cut(s) 42, 222, 366
MspA1I CMGCKG 1 cut(s) 854
MspR9I CCNGG 1 cut(s) 224
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 2 cut(s) 244, 878
NdeII GATC 3 cut(s) 79, 205, 448
NlaIII CATG 3 cut(s) 422, 484, 491
NlaIV GGNNCC 3 cut(s) 462, 540, 837
NmuCI GTSAC 2 cut(s) 211, 784
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 67, 299
PkrI GCNGC 3 cut(s) 486, 633, 853
Psp1406I AACGTT 1 cut(s) 651
Psp6I CCWGG 1 cut(s) 222
PspEI GGTNACC 1 cut(s) 211
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 3 cut(s) 462, 540, 837
PspOMI GGGCCC 1 cut(s) 538
PspPI GGNCC 3 cut(s) 428, 538, 539
PstI CTGCAG 1 cut(s) 636
PvuII CAGCTG 1 cut(s) 854
RsaI GTAC 2 cut(s) 146, 781
RsaNI GTAC 2 cut(s) 145, 780
RseI CAYNNNNRTG 1 cut(s) 423
SaqAI TTAA 3 cut(s) 150, 198, 525
SatI GCNGC 3 cut(s) 485, 632, 852
Sau3AI GATC 3 cut(s) 79, 205, 448
Sau96I GGNCC 3 cut(s) 428, 538, 539
ScaI AGTACT 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 542
SfaNI GCATC 3 cut(s) 347, 537, 634
SfcI CTRYAG 2 cut(s) 632, 672
SinI GGWCC 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
SpeI ACTAGT 1 cut(s) 584
Sse9I AATT 7 cut(s) 96, 236, 330, 472, 556, 727, 840
SsiI CCGC 3 cut(s) 244, 878, 903
SspMI CTAG 4 cut(s) 228, 585, 618, 810
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 2 cut(s) 456, 542
TaaI ACNGT 6 cut(s) 163, 437, 628, 784, 864, 894
TaiI ACGT 1 cut(s) 654
TaqI TCGA 1 cut(s) 348
TasI AATT 7 cut(s) 96, 236, 330, 472, 556, 727, 840
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 2 cut(s) 67, 299
Tru1I TTAA 3 cut(s) 150, 198, 525
Tru9I TTAA 3 cut(s) 150, 198, 525
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 2 cut(s) 211, 784
TseI GCWGC 3 cut(s) 484, 631, 851
Tsp45I GTSAC 2 cut(s) 211, 784
TspDTI ATGAA 6 cut(s) 17, 101, 105, 339, 569, 675
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 3 cut(s) 236, 330, 727
XspI CTAG 4 cut(s) 228, 585, 618, 810
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.