Rw4G010700

Nucleoporin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0011206
Physical Location & Seq
Forward (+)
24918805 .. 24921603
2799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G010700.1

Sequence Viewer

Length: 1038 bp
ATGGCAATAGGCACAGCACTCTCAGAGCCTCCCAAAATCTACAGATTCCCACAATCCAAGTACATAGACTCCGTCCGGTGGCTGCCTCCTATCCAAGCCTTGGACCGCTTGGCCGTGATCGCGGTTTTCGACTCGGATTCGGACTCTTCCTCCATACAAATCCACTCTTTCAACCAAGACCCATCACCAAATCTAACCCCCGACTCGCAATGGGACTCACCCTCGCGAGTTTCCTCTCTCACGGCGTCTCAATTCAAGCACAAGTCCCTCGTGGCCGCCGCAGCGTTTTCGGGTTCGCTTCACGTCTTGCTCACCGACATAATGGACCCTTCGTCGTTTGAATCGGAGCTTTCGTTGCCCGAAAAGGCATTGCATGACGGGCCCATTGCTTGTGTGGATGTGATGGATTGTGGGCTTGAGTGTGTCACTGTTGGGGAAGATGGGAGGGTCAATCTAGTCAGTTTGGGGGAGTCTGAGCTCAGCTATAGGAGGATTTTCGATAGCAGTGGGTTGGTTTCTGAGTTTGCTACTGGAGGATTTGGGTTTAGTCTGCAGTGGTGGGATCAGAGAAAGCCTGGTGGGGCGGTTTCTCAGTTCAAGGGTGACTGGAATCAAAGAAAAGCTTCCGGGATTGTACATTCCATTGATATTCATCCATCAAGAAAGCACACTTGTCTGGCAGGAGGCTCTTTAGGTACTGTATTTGCCTGGGATCTTAGGTGGCCACAACAGCCTCTTTTACTCTCTGGGGTTGGGTCAGGTGAAGCAAGCTGCTCACCATGTGAAAGTGAGGTTTGGGAGGTTCAGTATGACCCCTATGTAAAGTCTTCAAACGTAGGAAATGTTTCTTCACGTATTTTACCTACTATGATCTGTTCTGAGGACGGAATCCTTGCTGTTGTTGAACAGGGTGAGGAACCCATTGAGCTCTCAGCAGAACCTTGTGCAATCAACAGTTTTGACATAGACCAGCAATATCCTTCTGATGTGATATACAGCCTGGAGTGGGAATCTATAGCCATCTTGACAAGGCCATGA

Protein Analysis

345

Amino Acids

37.59

Weight (kDa)

4.55

Isoelectric Point (pI)

55.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30840
fragaria_vesca FvH4_4g09770 FvH4_4g09770 FvH4_4g09770
malus_domestica MD10G1281400.v1.1
prunus_persica Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1
pyrus_communis pycom10g23530
rosa_chinensis RchiOBHm_Chr4g0405491
rosa_laevigata RLG00000008840
rosa_multiflora Rmu_co8147422.1_g000001
rosa_roxburghii Rroxscaffold_5G00349930
rosa_rugosa Rorug04G0060500 Rorug04G0060600
rosa_samantha Rh4AG132200 Rh4BG127000 Rh4CG139700 Rh4DG126300
rosa_wichuraiana Rw4G010700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 100
AccII CGCG 2 cut(s) 122, 226
AciI CCGC 5 cut(s) 106, 122, 276, 279, 584
AclWI GGATC 2 cut(s) 570, 720
AcoI YGGCCR 3 cut(s) 111, 273, 722
AcyI GRCGYC 1 cut(s) 245
AdeI CACNNNGTG 1 cut(s) 782
AfaI GTAC 3 cut(s) 62, 636, 697
AfiI CCNNNNNNNGG 3 cut(s) 78, 100, 1006
AgsI TTSAA 6 cut(s) 172, 256, 341, 598, 831, 905
AhdI GACNNNNNGTC 1 cut(s) 331
AjiI CACGTC 1 cut(s) 304
AjnI CCWGG 3 cut(s) 574, 707, 999
AluBI AGCT 6 cut(s) 349, 478, 483, 623, 771, 928
AluI AGCT 6 cut(s) 349, 478, 483, 623, 771, 928
Alw21I GWGCWC 2 cut(s) 480, 930
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 2 cut(s) 570, 720
AoxI GGCC 5 cut(s) 111, 273, 380, 722, 1031
ApaI GGGCCC 1 cut(s) 384
ApeKI GCWGC 3 cut(s) 82, 281, 771
Asp700I GAANNNNTTC 2 cut(s) 622, 844
AspS9I GGNCC 4 cut(s) 103, 325, 380, 381
AsuC2I CCSGG 1 cut(s) 628
AsuHPI GGTGA 7 cut(s) 177, 210, 304, 614, 768, 773, 923
AvaII GGWCC 2 cut(s) 103, 325
BaeGI GKGCMC 1 cut(s) 384
BalI TGGCCA 1 cut(s) 724
BanII GRGCYC 3 cut(s) 384, 480, 930
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 819
Bbv12I GWGCWC 2 cut(s) 480, 930
BbvI GCAGC 3 cut(s) 69, 293, 758
BccI CCATC 5 cut(s) 190, 397, 434, 664, 1028
BceAI ACGGC 2 cut(s) 98, 258
BcgI CGANNNNNNTGC 2 cut(s) 270, 304
BciT130I CCWGG 3 cut(s) 576, 709, 1001
BcnI CCSGG 1 cut(s) 628
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 4 cut(s) 40, 484, 551, 1014
BisI GCNGC 5 cut(s) 83, 276, 279, 282, 772
BlpI GCTNAGC 1 cut(s) 479
BlsI GCNGC 5 cut(s) 84, 277, 280, 283, 773
Bme1390I CCNGG 4 cut(s) 576, 628, 709, 1001
Bme18I GGWCC 2 cut(s) 103, 325
BmeRI GACNNNNNGTC 1 cut(s) 331
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 4 cut(s) 103, 325, 380, 381
BmiI GGNNCC 3 cut(s) 327, 382, 918
BmrFI CCNGG 4 cut(s) 576, 628, 709, 1001
BpiI GAAGAC 1 cut(s) 819
BpmI CTGGAG 2 cut(s) 552, 1022
Bpu1102I GCTNAGC 1 cut(s) 479
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 628
BsaAI YACGTR 1 cut(s) 854
BsaBI GATNNNNATC 1 cut(s) 651
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 99, 708
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 8 cut(s) 53, 83, 134, 164, 338, 368, 791, 821
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 100, 1006
Bse1I ACTGG 2 cut(s) 535, 611
Bse3DI GCAATG 3 cut(s) 215, 368, 384
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 3 cut(s) 576, 709, 1001
BseDI CCNNGG 2 cut(s) 99, 708
BseGI GGATG 2 cut(s) 403, 652
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 3 cut(s) 78, 100, 1006
BseMI GCAATG 3 cut(s) 215, 368, 384
BseMII CTCAG 7 cut(s) 36, 465, 493, 510, 605, 870, 945
BseNI ACTGG 2 cut(s) 535, 611
BseSI GKGCMC 1 cut(s) 384
BseXI GCAGC 3 cut(s) 69, 293, 758
Bsh1236I CGCG 2 cut(s) 122, 226
BshFI GGCC 5 cut(s) 113, 275, 382, 724, 1033
BsiHKAI GWGCWC 2 cut(s) 480, 930
BsiSI CCGG 2 cut(s) 76, 627
BslFI GGGAC 2 cut(s) 227, 250
BslI CCNNNNNNNGG 3 cut(s) 78, 100, 1006
BsmAI GTCTC 1 cut(s) 252
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 2 cut(s) 227, 250
BsnI GGCC 5 cut(s) 113, 275, 382, 724, 1033
Bsp120I GGGCCC 1 cut(s) 380
Bsp1286I GDGCHC 3 cut(s) 384, 480, 930
Bsp1407I TGTACA 1 cut(s) 634
Bsp143I GATC 4 cut(s) 117, 562, 712, 870
Bsp1720I GCTNAGC 1 cut(s) 479
Bsp68I TCGCGA 1 cut(s) 226
BspACI CCGC 5 cut(s) 106, 122, 276, 279, 584
BspANI GGCC 5 cut(s) 113, 275, 382, 724, 1033
BspCNI CTCAG 7 cut(s) 35, 466, 492, 511, 604, 871, 944
BspFNI CGCG 2 cut(s) 122, 226
BspLI GGNNCC 3 cut(s) 327, 382, 918
BspMAI CTGCAG 1 cut(s) 555
BspPI GGATC 2 cut(s) 570, 720
BsrDI GCAATG 3 cut(s) 215, 368, 384
BsrGI TGTACA 1 cut(s) 634
BsrI ACTGG 2 cut(s) 535, 611
BssECI CCNNGG 2 cut(s) 99, 708
BssMI GATC 4 cut(s) 117, 562, 712, 870
BssNI GRCGYC 1 cut(s) 245
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 3 cut(s) 576, 709, 1001
Bst4CI ACNGT 3 cut(s) 430, 700, 956
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 245
BstAUI TGTACA 1 cut(s) 634
BstBAI YACGTR 1 cut(s) 854
BstC8I GCNNGC 1 cut(s) 769
BstDEI CTNAG 8 cut(s) 22, 474, 479, 519, 591, 716, 879, 931
BstF5I GGATG 2 cut(s) 403, 652
BstFNI CGCG 2 cut(s) 122, 226
BstKTI GATC 4 cut(s) 120, 565, 715, 873
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 4 cut(s) 117, 562, 712, 870
BstMWI GCNNNNNNNGC 5 cut(s) 119, 281, 355, 379, 730
BstNI CCWGG 3 cut(s) 576, 709, 1001
BstSCI CCNGG 4 cut(s) 574, 626, 707, 999
BstSFI CTRYAG 4 cut(s) 40, 484, 551, 1014
BstSLI GKGCMC 1 cut(s) 384
BstUI CGCG 2 cut(s) 122, 226
BstV1I GCAGC 3 cut(s) 69, 293, 758
BstV2I GAAGAC 1 cut(s) 819
BstX2I RGATCY 1 cut(s) 712
BstYI RGATCY 1 cut(s) 712
BsuRI GGCC 5 cut(s) 113, 275, 382, 724, 1033
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 2 cut(s) 403, 652
BtsI GCAGTG 2 cut(s) 511, 560
BtsIMutI CAGTG 3 cut(s) 426, 511, 560
BtuMI TCGCGA 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 769
Cfr13I GGNCC 4 cut(s) 103, 325, 380, 381
CseI GACGC 1 cut(s) 234
Csp6I GTAC 3 cut(s) 61, 635, 696
CviAII CATG 3 cut(s) 374, 780, 1035
CviQI GTAC 3 cut(s) 61, 635, 696
DdeI CTNAG 8 cut(s) 22, 474, 479, 519, 591, 716, 879, 931
DpnI GATC 4 cut(s) 119, 564, 714, 872
DpnII GATC 4 cut(s) 117, 562, 712, 870
DraIII CACNNNGTG 1 cut(s) 782
DriI GACNNNNNGTC 1 cut(s) 331
EaeI YGGCCR 3 cut(s) 111, 273, 722
Eam1104I CTCTTC 1 cut(s) 151
Eam1105I GACNNNNNGTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 151
Ecl136II GAGCTC 2 cut(s) 478, 928
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 3 cut(s) 384, 480, 930
Eco47I GGWCC 2 cut(s) 103, 325
Eco53kI GAGCTC 2 cut(s) 478, 928
EcoICRI GAGCTC 2 cut(s) 478, 928
EcoRII CCWGG 3 cut(s) 574, 707, 999
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 3 cut(s) 384, 480, 930
ErhI CCWWGG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 3 cut(s) 377, 783, 1038
FalI AAGNNNNNCTT 2 cut(s) 607, 639
FaqI GGGAC 2 cut(s) 227, 250
FatI CATG 3 cut(s) 373, 779, 1034
Fnu4HI GCNGC 5 cut(s) 83, 276, 279, 282, 772
FokI GGATG 2 cut(s) 410, 639
FriOI GRGCYC 3 cut(s) 384, 480, 930
Fsp4HI GCNGC 5 cut(s) 83, 276, 279, 282, 772
FspBI CTAG 1 cut(s) 455
GluI GCNGC 5 cut(s) 83, 276, 279, 282, 772
GsuI CTGGAG 2 cut(s) 552, 1022
HaeIII GGCC 5 cut(s) 113, 275, 382, 724, 1033
HapII CCGG 2 cut(s) 76, 627
HgaI GACGC 1 cut(s) 234
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 3 cut(s) 377, 783, 1038
HindIII AAGCTT 1 cut(s) 621
HpaII CCGG 2 cut(s) 76, 627
HphI GGTGA 7 cut(s) 177, 210, 304, 614, 768, 773, 923
Hpy188I TCNGA 9 cut(s) 25, 136, 142, 346, 475, 520, 567, 880, 985
Hpy188III TCNNGA 3 cut(s) 225, 660, 1024
Hpy99I CGWCG 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 339, 990
HpyCH4III ACNGT 3 cut(s) 430, 700, 956
HpyCH4IV ACGT 3 cut(s) 303, 834, 853
HpyCH4V TGCA 3 cut(s) 373, 553, 947
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 281, 355, 379, 730
HpyF3I CTNAG 8 cut(s) 22, 474, 479, 519, 591, 716, 879, 931
HpySE526I ACGT 3 cut(s) 303, 834, 853
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 3 cut(s) 377, 783, 1038
Kzo9I GATC 4 cut(s) 117, 562, 712, 870
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 3 cut(s) 69, 293, 758
MaeI CTAG 1 cut(s) 455
MaeII ACGT 3 cut(s) 303, 834, 853
MaeIII GTNAC 2 cut(s) 424, 602
MalI GATC 4 cut(s) 119, 564, 714, 872
MboI GATC 4 cut(s) 117, 562, 712, 870
MboII GAAGA 4 cut(s) 138, 449, 819, 840
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 3 cut(s) 384, 480, 930
MlsI TGGCCA 1 cut(s) 724
MluCI AATT 1 cut(s) 251
MluNI TGGCCA 1 cut(s) 724
MlyI GAGTC 6 cut(s) 62, 125, 137, 197, 209, 479
Mox20I TGGCCA 1 cut(s) 724
MroXI GAANNNNTTC 2 cut(s) 622, 844
MscI TGGCCA 1 cut(s) 724
Msp20I TGGCCA 1 cut(s) 724
MspI CCGG 2 cut(s) 76, 627
MspR9I CCNGG 4 cut(s) 576, 628, 709, 1001
MvaI CCWGG 3 cut(s) 576, 709, 1001
MvnI CGCG 2 cut(s) 122, 226
MwoI GCNNNNNNNGC 5 cut(s) 119, 281, 355, 379, 730
NciI CCSGG 1 cut(s) 628
NdeII GATC 4 cut(s) 117, 562, 712, 870
NlaIII CATG 3 cut(s) 377, 783, 1038
NlaIV GGNNCC 3 cut(s) 327, 382, 918
NmuCI GTSAC 2 cut(s) 424, 602
NruI TCGCGA 1 cut(s) 226
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 350
PdmI GAANNNNTTC 2 cut(s) 622, 844
PfeI GAWTC 6 cut(s) 45, 137, 341, 610, 888, 1010
PflFI GACNNNGTC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 100
PfoI TCCNGGA 1 cut(s) 626
PkrI GCNGC 5 cut(s) 84, 277, 280, 283, 773
PleI GAGTC 6 cut(s) 62, 125, 137, 197, 209, 478
PpsI GAGTC 6 cut(s) 62, 125, 137, 197, 209, 478
Ppu21I YACGTR 1 cut(s) 854
Psp124BI GAGCTC 2 cut(s) 480, 930
Psp6I CCWGG 3 cut(s) 574, 707, 999
PspGI CCWGG 3 cut(s) 574, 707, 999
PspN4I GGNNCC 3 cut(s) 327, 382, 918
PspOMI GGGCCC 1 cut(s) 380
PspPI GGNCC 4 cut(s) 103, 325, 380, 381
PstI CTGCAG 1 cut(s) 555
PsuI RGATCY 1 cut(s) 712
PsyI GACNNNGTC 1 cut(s) 71
RruI TCGCGA 1 cut(s) 226
RsaI GTAC 3 cut(s) 62, 636, 697
RsaNI GTAC 3 cut(s) 61, 635, 696
SacI GAGCTC 2 cut(s) 480, 930
SatI GCNGC 5 cut(s) 83, 276, 279, 282, 772
Sau3AI GATC 4 cut(s) 117, 562, 712, 870
Sau96I GGNCC 4 cut(s) 103, 325, 380, 381
SchI GAGTC 6 cut(s) 62, 125, 137, 197, 209, 479
ScrFI CCNGG 4 cut(s) 576, 628, 709, 1001
SduI GDGCHC 3 cut(s) 384, 480, 930
SfcI CTRYAG 4 cut(s) 40, 484, 551, 1014
SinI GGWCC 2 cut(s) 103, 325
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 1 cut(s) 251
SsiI CCGC 5 cut(s) 106, 122, 276, 279, 584
SspMI CTAG 1 cut(s) 455
SstI GAGCTC 2 cut(s) 480, 930
StyD4I CCNGG 4 cut(s) 574, 626, 707, 999
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 3 cut(s) 430, 700, 956
TaiI ACGT 3 cut(s) 306, 837, 856
TaqI TCGA 2 cut(s) 129, 498
TasI AATT 1 cut(s) 251
TatI WGTACW 2 cut(s) 60, 634
TauI GCSGC 2 cut(s) 278, 281
TfiI GAWTC 6 cut(s) 45, 137, 341, 610, 888, 1010
TscAI CASTG 3 cut(s) 433, 511, 560
TseFI GTSAC 2 cut(s) 424, 602
TseI GCWGC 3 cut(s) 82, 281, 771
Tsp45I GTSAC 2 cut(s) 424, 602
TspDTI ATGAA 1 cut(s) 641
TspGWI ACGGA 2 cut(s) 61, 900
TspRI CASTG 3 cut(s) 433, 511, 560
Tth111I GACNNNGTC 1 cut(s) 71
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 103, 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmnI GAANNNNTTC 2 cut(s) 622, 844
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.