Prupe.1G102000_v2.0.a1

Nucleoporin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011206
Physical Location & Seq
Forward (+)
8142683 .. 8146247
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G102000.1

Sequence Viewer

Length: 1062 bp
ATGGCGATCACGGCACTCTCCGAGCCTCCCCAAATCCACAGACTCCGACAATCCAAGTACATAGACGCTGTCCGCTGGTTGCCTCCTCTCTCAGCGTTAGACCGCTTGGCCGTCATCGCAGTTTTCGACTCAGATTCCGACTCTGCCGCCATAGAAACCCACTCTTTTGCTCCAGACCCAGAAAATCTAACTCAACAATCTCAATGGTTCTCGCCCTCACGAATTTCCTCCCTCAAAACCTCTCAATCCCACCACAAACCCTTTGTGGCCGCTGCAACATTGGCGGGCTCCATTCACATCTTGTTTGGGGATTCGATGGACCCGGCATCTCTCGAATCGGAGCTTTTGATGCCCGAAAAGGCATTGCATGAGGGACCCATTTCTTGTGTCGATATAATGGATGGTGGGGTGGAGTGTGTGAGTGTAGGGGAAGATGGGAGGGTGAATTTGGTCTCTGTTGGGGAGTCGGAGTTGAGCTACCAACGGATTTTCGATAGCAGCGGGTTGGTTTCGTTTACCACGGCGAAATGGGCCTCCCCGAGTGAGTTTGCCACTGGAGGATATGGATTTAGTCTCCAGTGGTGGGATCAGAGAAAGCCTGGTGCGGCGGTGTCTCAGTTTAAGGGTAGCTGGTCTCAAAGAACAACTCCTGGGATCGTACATTCCATTGATATTCATCCTTCACGAAAGCACACTTGTCTGGCAGGAGGTTCCTTAGGTACTGTATTTGCCTGGGATCTTAGGTGGCCACAACAACCAATTCTTCTTTCTGGTGTTGGGGCAGGTGAAACAACCCATTCACCATGCGAAAGTGAGGTTTGGGAGGTTCACTTTGACCACTATGCAAAGTCTTCAAATGTGGGAAATGTCTCTTCACGTATCTTACCTACTATGATCTGTTCAGAAGACGGTATCCTTGCTGTTGTTGAACAGGGTGAAGAACCCGTTGAGCTCTTAGCTGAACCTTGTGCAATCAACAGCTTTGACATAGACCGGCAATATCCTTCTGATGTGATATGTAGTTTGGAGTGGGAATCCATAGCCATCTTGACAAGGTCATGA

Protein Analysis

354

Amino Acids

38.42

Weight (kDa)

4.84

Isoelectric Point (pI)

60.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30840
fragaria_vesca FvH4_4g09770 FvH4_4g09770 FvH4_4g09770
malus_domestica MD10G1281400.v1.1
prunus_persica Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1
pyrus_communis pycom10g23530
rosa_chinensis RchiOBHm_Chr4g0405491
rosa_laevigata RLG00000008840
rosa_multiflora Rmu_co8147422.1_g000001
rosa_roxburghii Rroxscaffold_5G00349930
rosa_rugosa Rorug04G0060500 Rorug04G0060600
rosa_samantha Rh4AG132200 Rh4BG127000 Rh4CG139700 Rh4DG126300
rosa_wichuraiana Rw4G010700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 773
Acc36I ACCTGC 1 cut(s) 773
AciI CCGC 8 cut(s) 73, 103, 147, 270, 284, 501, 605, 608
AclWI GGATC 3 cut(s) 594, 662, 744
AcoI YGGCCR 3 cut(s) 108, 267, 746
AcsI RAATTY 2 cut(s) 222, 445
AfaI GTAC 3 cut(s) 59, 660, 721
AfiI CCNNNNNNNGG 1 cut(s) 583
AgsI TTSAA 2 cut(s) 855, 929
AjnI CCWGG 3 cut(s) 598, 649, 731
AjuI GAANNNNNNNTTGG 2 cut(s) 751, 783
AluBI AGCT 6 cut(s) 343, 477, 630, 952, 959, 981
AluI AGCT 6 cut(s) 343, 477, 630, 952, 959, 981
Alw21I GWGCWC 1 cut(s) 954
Alw26I GTCTC 5 cut(s) 457, 578, 618, 639, 874
AlwI GGATC 3 cut(s) 594, 662, 744
Ama87I CYCGRG 1 cut(s) 538
AoxI GGCC 4 cut(s) 108, 267, 531, 746
ApeKI GCWGC 2 cut(s) 272, 498
ApoI RAATTY 2 cut(s) 222, 445
AspS9I GGNCC 3 cut(s) 319, 374, 531
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 4 cut(s) 454, 792, 797, 947
AvaI CYCGRG 1 cut(s) 538
AvaII GGWCC 2 cut(s) 319, 374
AxyI CCTNAGG 1 cut(s) 715
BalI TGGCCA 1 cut(s) 748
BanII GRGCYC 2 cut(s) 290, 954
BbsI GAAGAC 2 cut(s) 843, 912
Bbv12I GWGCWC 1 cut(s) 954
BbvI GCAGC 2 cut(s) 259, 510
BccI CCATC 4 cut(s) 310, 395, 428, 1052
BceAI ACGGC 3 cut(s) 27, 95, 537
BciT130I CCWGG 3 cut(s) 600, 651, 733
BciVI GTATCC 1 cut(s) 923
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 5 cut(s) 457, 578, 618, 639, 874
BfuAI ACCTGC 1 cut(s) 773
BfuI GTATCC 1 cut(s) 923
BisI GCNGC 5 cut(s) 147, 270, 273, 499, 606
BlsI GCNGC 5 cut(s) 148, 271, 274, 500, 607
Bme1390I CCNGG 4 cut(s) 323, 600, 651, 733
Bme18I GGWCC 2 cut(s) 319, 374
BmeT110I CYCGRG 1 cut(s) 538
BmgT120I GGNCC 3 cut(s) 319, 374, 531
BmiI GGNNCC 5 cut(s) 289, 321, 375, 376, 712
BmrFI CCNGG 4 cut(s) 323, 600, 651, 733
BmsI GCATC 2 cut(s) 335, 339
BpiI GAAGAC 2 cut(s) 843, 912
BpmI CTGGAG 3 cut(s) 156, 560, 576
BpuMI CCSGG 1 cut(s) 323
BsaAI YACGTR 1 cut(s) 878
BsaBI GATNNNNATC 1 cut(s) 675
BsaI GGTCTC 2 cut(s) 457, 639
BsaJI CCNNGG 3 cut(s) 519, 650, 732
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse118I RCCGGY 1 cut(s) 993
Bse1I ACTGG 2 cut(s) 559, 577
Bse21I CCTNAGG 1 cut(s) 715
Bse3DI GCAATG 1 cut(s) 362
Bse8I GATNNNNATC 1 cut(s) 675
BseBI CCWGG 3 cut(s) 600, 651, 733
BseDI CCNNGG 3 cut(s) 519, 650, 732
BseGI GGATG 2 cut(s) 406, 676
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMI GCAATG 1 cut(s) 362
BseMII CTCAG 3 cut(s) 105, 144, 629
BseNI ACTGG 2 cut(s) 559, 577
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 2 cut(s) 259, 510
BshFI GGCC 4 cut(s) 110, 269, 533, 748
BsiHKAI GWGCWC 1 cut(s) 954
BsiHKCI CYCGRG 1 cut(s) 538
BsiSI CCGG 2 cut(s) 323, 994
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 1 cut(s) 583
BsmAI GTCTC 5 cut(s) 457, 578, 618, 639, 874
BsmFI GGGAC 1 cut(s) 387
BsnI GGCC 4 cut(s) 110, 269, 533, 748
Bso31I GGTCTC 2 cut(s) 457, 639
BsoBI CYCGRG 1 cut(s) 538
Bsp1286I GDGCHC 2 cut(s) 290, 954
Bsp143I GATC 5 cut(s) 6, 586, 654, 736, 894
BspACI CCGC 8 cut(s) 73, 103, 147, 270, 284, 501, 605, 608
BspANI GGCC 4 cut(s) 110, 269, 533, 748
BspCNI CTCAG 3 cut(s) 104, 143, 628
BspHI TCATGA 1 cut(s) 1058
BspLI GGNNCC 5 cut(s) 289, 321, 375, 376, 712
BspMI ACCTGC 1 cut(s) 773
BspPI GGATC 3 cut(s) 594, 662, 744
BspTNI GGTCTC 2 cut(s) 457, 639
BsrDI GCAATG 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 993
BsrI ACTGG 2 cut(s) 559, 577
BssAI RCCGGY 1 cut(s) 993
BssECI CCNNGG 3 cut(s) 519, 650, 732
BssMI GATC 5 cut(s) 6, 586, 654, 736, 894
Bst2UI CCWGG 3 cut(s) 600, 651, 733
Bst4CI ACNGT 2 cut(s) 724, 911
Bst6I CTCTTC 1 cut(s) 877
BstBAI YACGTR 1 cut(s) 878
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 6 cut(s) 91, 130, 615, 715, 740, 955
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 2 cut(s) 406, 676
BstKTI GATC 5 cut(s) 9, 589, 657, 739, 897
BstMAI GTCTC 5 cut(s) 457, 578, 618, 639, 874
BstMBI GATC 5 cut(s) 6, 586, 654, 736, 894
BstMWI GCNNNNNNNGC 5 cut(s) 11, 116, 281, 349, 530
BstNI CCWGG 3 cut(s) 600, 651, 733
BstSCI CCNGG 4 cut(s) 321, 598, 649, 731
BstV1I GCAGC 2 cut(s) 259, 510
BstV2I GAAGAC 2 cut(s) 843, 912
BstX2I RGATCY 1 cut(s) 736
BstYI RGATCY 1 cut(s) 736
Bsu36I CCTNAGG 1 cut(s) 715
BsuI GTATCC 1 cut(s) 923
BsuRI GGCC 4 cut(s) 110, 269, 533, 748
BtgI CCRYGG 1 cut(s) 519
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 2 cut(s) 406, 676
BtsIMutI CAGTG 2 cut(s) 552, 584
BveI ACCTGC 1 cut(s) 773
Cac8I GCNNGC 1 cut(s) 286
CciI TCATGA 1 cut(s) 1058
Cfr10I RCCGGY 1 cut(s) 993
Cfr13I GGNCC 3 cut(s) 319, 374, 531
CseI GACGC 1 cut(s) 74
Csp6I GTAC 3 cut(s) 58, 659, 720
CviAII CATG 3 cut(s) 368, 804, 1059
CviQI GTAC 3 cut(s) 58, 659, 720
DdeI CTNAG 6 cut(s) 91, 130, 615, 715, 740, 955
DpnI GATC 5 cut(s) 8, 588, 656, 738, 896
DpnII GATC 5 cut(s) 6, 586, 654, 736, 894
EaeI YGGCCR 3 cut(s) 108, 267, 746
Eam1104I CTCTTC 1 cut(s) 877
EarI CTCTTC 1 cut(s) 877
Ecl136II GAGCTC 1 cut(s) 952
Eco24I GRGCYC 2 cut(s) 290, 954
Eco31I GGTCTC 2 cut(s) 457, 639
Eco47I GGWCC 2 cut(s) 319, 374
Eco53kI GAGCTC 1 cut(s) 952
Eco81I CCTNAGG 1 cut(s) 715
Eco88I CYCGRG 1 cut(s) 538
EcoICRI GAGCTC 1 cut(s) 952
EcoO109I RGGNCCY 1 cut(s) 374
EcoRII CCWGG 3 cut(s) 598, 649, 731
EcoT38I GRGCYC 2 cut(s) 290, 954
FaeI CATG 3 cut(s) 371, 807, 1062
FaqI GGGAC 1 cut(s) 387
FatI CATG 3 cut(s) 367, 803, 1058
FauI CCCGC 2 cut(s) 277, 494
Fnu4HI GCNGC 5 cut(s) 147, 270, 273, 499, 606
FokI GGATG 2 cut(s) 413, 663
FriOI GRGCYC 2 cut(s) 290, 954
Fsp4HI GCNGC 5 cut(s) 147, 270, 273, 499, 606
GluI GCNGC 5 cut(s) 147, 270, 273, 499, 606
GsuI CTGGAG 3 cut(s) 156, 560, 576
HaeIII GGCC 4 cut(s) 110, 269, 533, 748
HapII CCGG 2 cut(s) 323, 994
HgaI GACGC 1 cut(s) 74
Hin1II CATG 3 cut(s) 371, 807, 1062
HinfI GANTC 8 cut(s) 42, 128, 134, 140, 311, 335, 464, 1034
HpaII CCGG 2 cut(s) 323, 994
HphI GGTGA 4 cut(s) 454, 792, 797, 947
Hpy166II GTNNAC 2 cut(s) 516, 829
Hpy188I TCNGA 9 cut(s) 22, 47, 133, 139, 340, 469, 591, 904, 1009
Hpy188III TCNNGA 6 cut(s) 173, 219, 332, 684, 1048, 1059
Hpy8I GTNNAC 2 cut(s) 516, 829
HpyAV CCTTC 2 cut(s) 690, 1014
HpyCH4III ACNGT 2 cut(s) 724, 911
HpyCH4IV ACGT 1 cut(s) 877
HpyCH4V TGCA 4 cut(s) 275, 367, 845, 971
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 116, 281, 349, 530
HpyF3I CTNAG 6 cut(s) 91, 130, 615, 715, 740, 955
HpySE526I ACGT 1 cut(s) 877
Hsp92II CATG 3 cut(s) 371, 807, 1062
KflI GGGWCCC 1 cut(s) 374
Kzo9I GATC 5 cut(s) 6, 586, 654, 736, 894
LmnI GCTCC 3 cut(s) 175, 293, 340
Lsp1109I GCAGC 2 cut(s) 259, 510
LweI GCATC 2 cut(s) 335, 339
MaeII ACGT 1 cut(s) 877
MalI GATC 5 cut(s) 8, 588, 656, 738, 896
MboI GATC 5 cut(s) 6, 586, 654, 736, 894
MboII GAAGA 6 cut(s) 443, 755, 843, 864, 917, 950
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 2 cut(s) 290, 954
MlsI TGGCCA 1 cut(s) 748
MluCI AATT 3 cut(s) 222, 445, 759
MluNI TGGCCA 1 cut(s) 748
MlyI GAGTC 4 cut(s) 36, 122, 134, 473
MmeI TCCRAC 3 cut(s) 70, 162, 447
Mox20I TGGCCA 1 cut(s) 748
MscI TGGCCA 1 cut(s) 748
MseI TTAA 1 cut(s) 621
Msp20I TGGCCA 1 cut(s) 748
MspA1I CMGCKG 3 cut(s) 75, 272, 501
MspI CCGG 2 cut(s) 323, 994
MspR9I CCNGG 4 cut(s) 323, 600, 651, 733
MvaI CCWGG 3 cut(s) 600, 651, 733
MwoI GCNNNNNNNGC 5 cut(s) 11, 116, 281, 349, 530
NciI CCSGG 1 cut(s) 323
NdeII GATC 5 cut(s) 6, 586, 654, 736, 894
NlaIII CATG 3 cut(s) 371, 807, 1062
NlaIV GGNNCC 5 cut(s) 289, 321, 375, 376, 712
PagI TCATGA 1 cut(s) 1058
PaqCI CACCTGC 1 cut(s) 773
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 4 cut(s) 134, 311, 335, 1034
PflFI GACNNNGTC 2 cut(s) 68, 1054
PkrI GCNGC 5 cut(s) 148, 271, 274, 500, 607
PleI GAGTC 4 cut(s) 36, 122, 134, 472
PpsI GAGTC 4 cut(s) 36, 122, 134, 472
Ppu21I YACGTR 1 cut(s) 878
PpuMI RGGWCCY 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 954
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 3 cut(s) 598, 649, 731
PspGI CCWGG 3 cut(s) 598, 649, 731
PspN4I GGNNCC 5 cut(s) 289, 321, 375, 376, 712
PspPI GGNCC 3 cut(s) 319, 374, 531
PspPPI RGGWCCY 1 cut(s) 374
PsuI RGATCY 1 cut(s) 736
PsyI GACNNNGTC 2 cut(s) 68, 1054
RsaI GTAC 3 cut(s) 59, 660, 721
RsaNI GTAC 3 cut(s) 58, 659, 720
SacI GAGCTC 1 cut(s) 954
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 5 cut(s) 147, 270, 273, 499, 606
Sau3AI GATC 5 cut(s) 6, 586, 654, 736, 894
Sau96I GGNCC 3 cut(s) 319, 374, 531
SchI GAGTC 4 cut(s) 36, 122, 134, 473
ScrFI CCNGG 4 cut(s) 323, 600, 651, 733
SduI GDGCHC 2 cut(s) 290, 954
SfaNI GCATC 2 cut(s) 335, 339
SinI GGWCC 2 cut(s) 319, 374
Sse9I AATT 3 cut(s) 222, 445, 759
SsiI CCGC 8 cut(s) 73, 103, 147, 270, 284, 501, 605, 608
SstI GAGCTC 1 cut(s) 954
StyD4I CCNGG 4 cut(s) 321, 598, 649, 731
TaaI ACNGT 2 cut(s) 724, 911
TaiI ACGT 1 cut(s) 880
TaqI TCGA 5 cut(s) 126, 314, 333, 390, 492
TasI AATT 3 cut(s) 222, 445, 759
TatI WGTACW 1 cut(s) 57
TauI GCSGC 3 cut(s) 149, 272, 608
TfiI GAWTC 4 cut(s) 134, 311, 335, 1034
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TscAI CASTG 2 cut(s) 559, 584
TseI GCWGC 2 cut(s) 272, 498
TspDTI ATGAA 1 cut(s) 665
TspGWI ACGGA 1 cut(s) 499
TspRI CASTG 2 cut(s) 559, 584
Tth111I GACNNNGTC 2 cut(s) 68, 1054
VpaK11BI GGWCC 2 cut(s) 319, 374
XapI RAATTY 2 cut(s) 222, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.