Rmu_co8147422.1_g000001

Nucleoporin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8147422.1
OG0011206
Physical Location & Seq
Forward (+)
1 .. 579
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8147422.1_g000001.1.cds

Sequence Viewer

Length: 321 bp
gcaggaggctctttaggtactgtatttgcctgggatcttaggtggccacaacatcctcttttactctctggggttgggtcaggtgaagcaagctgctcaccatgtgaaagtgaggtttgggaggttcagtatgacccctatgtaaagtcttcgaacgtaggaaatgtttcttcacgtattttacctactatgatctgttctgaggatggaattcttgctgttgttgaacagggtgaggaacccattgagctctcagcagaaccttgtgcaatcaacagttttgacatagaccagcaatatccttctgtgagtagaaattga

Protein Analysis

106

Amino Acids

11.4

Weight (kDa)

4.05

Isoelectric Point (pI)

60.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011206)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30840
fragaria_vesca FvH4_4g09770 FvH4_4g09770 FvH4_4g09770
malus_domestica MD10G1281400.v1.1
prunus_persica Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1 Prupe.1G102000_v2.0.a1
pyrus_communis pycom10g23530
rosa_chinensis RchiOBHm_Chr4g0405491
rosa_laevigata RLG00000008840
rosa_multiflora Rmu_co8147422.1_g000001
rosa_roxburghii Rroxscaffold_5G00349930
rosa_rugosa Rorug04G0060500 Rorug04G0060600
rosa_samantha Rh4AG132200 Rh4BG127000 Rh4CG139700 Rh4DG126300
rosa_wichuraiana Rw4G010700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 42
AcoI YGGCCR 1 cut(s) 44
AcsI RAATTY 1 cut(s) 210
AdeI CACNNNGTG 1 cut(s) 104
AfaI GTAC 1 cut(s) 19
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 2 cut(s) 93, 250
AluI AGCT 2 cut(s) 93, 250
Alw21I GWGCWC 1 cut(s) 252
AlwI GGATC 1 cut(s) 42
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 166
AsuHPI GGTGA 3 cut(s) 90, 95, 245
AsuII TTCGAA 1 cut(s) 152
BalI TGGCCA 1 cut(s) 46
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 80
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 31
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 141
Bpu14I TTCGAA 1 cut(s) 152
BsaAI YACGTR 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 52, 211
BseMII CTCAG 2 cut(s) 192, 267
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 252
BsnI GGCC 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 2 cut(s) 34, 192
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 2 cut(s) 193, 266
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 1 cut(s) 42
BspT104I TTCGAA 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 2 cut(s) 34, 192
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 2 cut(s) 22, 278
BstBAI YACGTR 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 3 cut(s) 38, 201, 253
BstF5I GGATG 2 cut(s) 52, 211
BstKTI GATC 2 cut(s) 37, 195
BstMBI GATC 2 cut(s) 34, 192
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuRI GGCC 1 cut(s) 46
BtsCI GGATG 2 cut(s) 52, 211
Cac8I GCNNGC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 18
CviAII CATG 1 cut(s) 102
CviJI RGCY 4 cut(s) 9, 46, 93, 250
CviKI_1 RGCY 4 cut(s) 9, 46, 93, 250
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 3 cut(s) 38, 201, 253
DpnI GATC 2 cut(s) 36, 194
DpnII GATC 2 cut(s) 34, 192
DraIII CACNNNGTG 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 1 cut(s) 105
FaiI YATR 5 cut(s) 103, 132, 141, 191, 287
FatI CATG 1 cut(s) 101
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 2 cut(s) 39, 218
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 94
HaeIII GGCC 1 cut(s) 46
Hin1II CATG 1 cut(s) 105
HphI GGTGA 3 cut(s) 90, 95, 245
Hpy188I TCNGA 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 312
HpyCH4III ACNGT 2 cut(s) 22, 278
HpyCH4IV ACGT 2 cut(s) 156, 175
HpyCH4V TGCA 1 cut(s) 269
HpyF3I CTNAG 3 cut(s) 38, 201, 253
HpySE526I ACGT 2 cut(s) 156, 175
Hsp92II CATG 1 cut(s) 105
Kzo9I GATC 2 cut(s) 34, 192
LpnPI CCDG 6 cut(s) 16, 43, 54, 66, 215, 305
Lsp1109I GCAGC 1 cut(s) 80
MaeII ACGT 2 cut(s) 156, 175
MalI GATC 2 cut(s) 36, 194
MboI GATC 2 cut(s) 34, 192
MboII GAAGA 2 cut(s) 141, 162
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 252
MlsI TGGCCA 1 cut(s) 46
MluCI AATT 2 cut(s) 210, 316
MluNI TGGCCA 1 cut(s) 46
MnlI CCTC 5 cut(s) 66, 106, 115, 196, 229
Mox20I TGGCCA 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 166
MscI TGGCCA 1 cut(s) 46
Msp20I TGGCCA 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
NdeII GATC 2 cut(s) 34, 192
NlaIII CATG 1 cut(s) 105
NlaIV GGNNCC 1 cut(s) 240
NspV TTCGAA 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 166
PkrI GCNGC 1 cut(s) 95
Ppu21I YACGTR 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 240
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SacI GAGCTC 1 cut(s) 252
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 2 cut(s) 34, 192
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 1 cut(s) 252
SfuI TTCGAA 1 cut(s) 152
Sse9I AATT 2 cut(s) 210, 316
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 29
TaaI ACNGT 2 cut(s) 22, 278
TaiI ACGT 2 cut(s) 159, 178
TaqI TCGA 1 cut(s) 152
TasI AATT 2 cut(s) 210, 316
TseI GCWGC 1 cut(s) 93
XapI RAATTY 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.