Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006560

Physical Location & Seq

Genomic Coordinates Reverse (-)

15049811 .. 15051751

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G30930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCGAGTCTTCGATGCTTTCGTGAGCTGAGCCGCCGCGCTACGACTGTTTTCTCCATCAACCAGACGCGATCGATCTCTTCATTTCATGGGATTGAGTTTTCCGGGACCAGCATTTCTCATGGGACCGTAATTCCGAATCGATCTCTCACTAGGAATTTGCCATGGTACAGTCATTGGTATCGCTCTCAAGATCGTTGTTTCTCTTCGAACACAAAGGATACTGATGAAGATGAAGAAAGCAGTGAAGGAGAGGATGATGATGAGGAGGAGGGGGAAGACTTTGAGGATTCGGCGGATATGGAAGTAGAAAGGGAATATTCACCGGCGGAGAAAGTGGAAGAGGCGGAGGAGATAGGGTACAAGGTGATGGGTCCTCTTAAACCTTCGGAGAGACTTTTCAAACCCTATGAACCAGTGTTTGCCATTGTTCAGATTGGTTCGCATCAGTTTAAAGTTAGCAATGGGGACTCCATTTTCACCGAGAAGTTGAAATTCTGTGACATCAATGATAAGTTGGAACTAACCAAGGTTCTTCTATTGGGCTCGGCAAGCCAGACGATTATTGGTAGGCCTATTTTGCCAGATGCGACAGTTCATGCTGTAGTTGAAGAGCATGCTTTGGATGAAAAAGTGCTCATTTTCAAAAAGAAACGAAGAAAGAATTATAGGAGAACGAGAGGACATCGACAGGAATTGACGAAGTTGAGAATAACCGATATACAAGGAATTGAAAAACCAGAACCGAAGATCGTCCATAAGCCTTCGAAAGAAGCTGTTACAGAACAGACGAAGGCTGAGCTAGTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009566 GO:0009567 GO:0009987 GO:0010197 GO:0016043 GO:0019953 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0051704 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

270

Amino Acids

30.91

Weight (kDa)

5.52

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21p	PF00829	141 - 241	1.4e-32	Ribosomal prokaryotic L21 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30930
fragaria_vesca	FvH4_3g09190
malus_domestica	MD05G1312600.v1.1 MD10G1294400.v1.1
prunus_persica	Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1
pyrus_communis	pycom05g29050 pycom10g24610
rosa_chinensis	RchiOBHm_Chr5g0008411
rosa_laevigata	RLG00000031342 RLG00000031387 RLG00000031569 RLG00000035355
rosa_multiflora	Rmu_sc0004326.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068080
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064300 Rh5BG061500 Rh5CG071400 Rh5CG071700 Rh5DG060400 Rh5DG064100
rosa_wichuraiana	Rw5G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	39, 70
AciI	CCGC	5 cut(s)	34, 37, 296, 329, 347
AcsI	RAATTY	2 cut(s)	157, 494
AfaI	GTAC	2 cut(s)	170, 362
AgsI	TTSAA	5 cut(s)	403, 493, 611, 646, 734
AluBI	AGCT	3 cut(s)	28, 776, 802
AluI	AGCT	3 cut(s)	28, 776, 802
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	1 cut(s)	388
AoxI	GGCC	1 cut(s)	572
ApoI	RAATTY	2 cut(s)	157, 494
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	3 cut(s)	108, 126, 374
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	3 cut(s)	315, 379, 472
AsuII	TTCGAA	2 cut(s)	209, 767
AvaII	GGWCC	3 cut(s)	108, 126, 374
BanII	GRGCYC	1 cut(s)	548
BbsI	GAAGAC	2 cut(s)	2, 285
Bbv12I	GWGCWC	1 cut(s)	639
BccI	CCATC	2 cut(s)	65, 364
BciVI	GTATCC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	2 cut(s)	153, 803
BfmI	CTRYAG	1 cut(s)	603
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	2 cut(s)	34, 37
BlpI	GCTNAGC	2 cut(s)	29, 798
BlsI	GCNGC	2 cut(s)	35, 38
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	3 cut(s)	108, 126, 374
BmgT120I	GGNCC	3 cut(s)	108, 126, 374
BmiI	GGNNCC	3 cut(s)	109, 127, 375
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	3 cut(s)	5, 454, 577
BpiI	GAAGAC	2 cut(s)	2, 285
Bpu1102I	GCTNAGC	2 cut(s)	29, 798
Bpu14I	TTCGAA	2 cut(s)	209, 767
BpuEI	CTTGAG	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	106
Bsa29I	ATCGAT	2 cut(s)	74, 142
BsaJI	CCNNGG	2 cut(s)	164, 528
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	416
Bse3DI	GCAATG	1 cut(s)	469
BseCI	ATCGAT	2 cut(s)	74, 142
BseDI	CCNNGG	2 cut(s)	164, 528
BseGI	GGATG	2 cut(s)	262, 631
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	2 cut(s)	20, 789
BseNI	ACTGG	1 cut(s)	416
BseRI	GAGGAG	3 cut(s)	281, 284, 365
Bsh1236I	CGCG	2 cut(s)	39, 70
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	574
BshVI	ATCGAT	2 cut(s)	74, 142
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	639
BsiSI	CCGG	2 cut(s)	105, 326
BslFI	GGGAC	3 cut(s)	121, 139, 482
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	3 cut(s)	121, 139, 482
BsnI	GGCC	1 cut(s)	574
Bsp119I	TTCGAA	2 cut(s)	209, 767
Bsp1286I	GDGCHC	2 cut(s)	548, 639
Bsp143I	GATC	5 cut(s)	71, 75, 143, 193, 750
Bsp1720I	GCTNAGC	2 cut(s)	29, 798
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	5 cut(s)	34, 37, 296, 329, 347
BspANI	GGCC	1 cut(s)	574
BspCNI	CTCAG	2 cut(s)	21, 790
BspDI	ATCGAT	2 cut(s)	74, 142
BspFNI	CGCG	2 cut(s)	39, 70
BspLI	GGNNCC	3 cut(s)	109, 127, 375
BspQI	GCTCTTC	1 cut(s)	606
BspT104I	TTCGAA	2 cut(s)	209, 767
BsrDI	GCAATG	1 cut(s)	469
BsrFI	RCCGGY	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	416
BssAI	RCCGGY	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	164, 528
BssMI	GATC	5 cut(s)	71, 75, 143, 193, 750
BssT1I	CCWWGG	2 cut(s)	164, 528
Bst4CI	ACNGT	4 cut(s)	49, 130, 173, 595
Bst6I	CTCTTC	4 cut(s)	85, 211, 336, 606
BstBI	TTCGAA	2 cut(s)	209, 767
BstC8I	GCNNGC	2 cut(s)	553, 618
BstDEI	CTNAG	3 cut(s)	29, 798, 810
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	2 cut(s)	262, 631
BstFNI	CGCG	2 cut(s)	39, 70
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	5 cut(s)	74, 78, 146, 196, 753
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	5 cut(s)	71, 75, 143, 193, 750
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	2 cut(s)	552, 580
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	1 cut(s)	104
BstSFI	CTRYAG	1 cut(s)	603
BstUI	CGCG	2 cut(s)	39, 70
BstV2I	GAAGAC	2 cut(s)	2, 285
Bsu15I	ATCGAT	2 cut(s)	74, 142
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	574
BsuTUI	ATCGAT	2 cut(s)	74, 142
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	262, 631
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	2 cut(s)	250, 423
Cac8I	GCNNGC	2 cut(s)	553, 618
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	3 cut(s)	108, 126, 374
ClaI	ATCGAT	2 cut(s)	74, 142
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	169, 361
CviAII	CATG	5 cut(s)	89, 122, 165, 599, 617
CviJI	RGCY	9 cut(s)	28, 33, 546, 555, 574, 763, 776, 797, 802
CviKI_1	RGCY	9 cut(s)	28, 33, 546, 555, 574, 763, 776, 797, 802
CviQI	GTAC	2 cut(s)	169, 361
DdeI	CTNAG	3 cut(s)	29, 798, 810
DpnI	GATC	5 cut(s)	73, 77, 145, 195, 752
DpnII	GATC	5 cut(s)	71, 75, 143, 193, 750
DraI	TTTAAA	1 cut(s)	454
Eam1104I	CTCTTC	4 cut(s)	85, 211, 336, 606
EarI	CTCTTC	4 cut(s)	85, 211, 336, 606
EciI	GGCGGA	3 cut(s)	311, 344, 362
Eco130I	CCWWGG	2 cut(s)	164, 528
Eco147I	AGGCCT	1 cut(s)	574
Eco24I	GRGCYC	1 cut(s)	548
Eco47I	GGWCC	3 cut(s)	108, 126, 374
EcoO109I	RGGNCCY	1 cut(s)	374
EcoT14I	CCWWGG	2 cut(s)	164, 528
EcoT38I	GRGCYC	1 cut(s)	548
ErhI	CCWWGG	2 cut(s)	164, 528
FaeI	CATG	5 cut(s)	92, 125, 168, 602, 620
FaqI	GGGAC	3 cut(s)	121, 139, 482
FatI	CATG	5 cut(s)	88, 121, 164, 598, 616
Fnu4HI	GCNGC	2 cut(s)	34, 37
FokI	GGATG	2 cut(s)	269, 638
FriOI	GRGCYC	1 cut(s)	548
Fsp4HI	GCNGC	2 cut(s)	34, 37
FspBI	CTAG	2 cut(s)	153, 803
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	34, 37
HaeIII	GGCC	1 cut(s)	574
HapII	CCGG	2 cut(s)	105, 326
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	5 cut(s)	92, 125, 168, 602, 620
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	4 cut(s)	7, 139, 290, 470
HpaII	CCGG	2 cut(s)	105, 326
HphI	GGTGA	3 cut(s)	315, 379, 472
Hpy188I	TCNGA	3 cut(s)	138, 391, 435
Hpy188III	TCNNGA	2 cut(s)	23, 191
HpyAV	CCTTC	4 cut(s)	242, 396, 774, 787
HpyCH4III	ACNGT	4 cut(s)	49, 130, 173, 595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	552, 580
HpyF3I	CTNAG	3 cut(s)	29, 798, 810
Hsp92II	CATG	5 cut(s)	92, 125, 168, 602, 620
HspAI	GCGC	1 cut(s)	39
Kzo9I	GATC	5 cut(s)	71, 75, 143, 193, 750
LguI	GCTCTTC	1 cut(s)	606
LpnPI	CCDG	9 cut(s)	77, 118, 124, 339, 429, 569, 597, 677, 753
LweI	GCATC	3 cut(s)	5, 454, 577
MaeI	CTAG	2 cut(s)	153, 803
MaeIII	GTNAC	2 cut(s)	500, 778
MalI	GATC	5 cut(s)	73, 77, 145, 195, 752
MboI	GATC	5 cut(s)	71, 75, 143, 193, 750
MhlI	GDGCHC	2 cut(s)	548, 639
MluCI	AATT	6 cut(s)	132, 157, 494, 664, 695, 729
MlyI	GAGTC	2 cut(s)	16, 464
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	9 cut(s)	247, 259, 262, 265, 280, 337, 343, 387, 674
MseI	TTAA	2 cut(s)	381, 453
MspI	CCGG	2 cut(s)	105, 326
MspR9I	CCNGG	1 cut(s)	106
MvnI	CGCG	2 cut(s)	39, 70
MwoI	GCNNNNNNNGC	2 cut(s)	552, 580
NciI	CCSGG	1 cut(s)	106
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	5 cut(s)	71, 75, 143, 193, 750
NlaIII	CATG	5 cut(s)	92, 125, 168, 602, 620
NlaIV	GGNNCC	3 cut(s)	109, 127, 375
NmeAIII	GCCGAG	1 cut(s)	527
NmuCI	GTSAC	1 cut(s)	500
NspI	RCATGY	1 cut(s)	620
NspV	TTCGAA	2 cut(s)	209, 767
PaeI	GCATGC	1 cut(s)	620
PceI	AGGCCT	1 cut(s)	574
PciSI	GCTCTTC	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PfeI	GAWTC	2 cut(s)	139, 290
PfoI	TCCNGGA	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	35, 38
Ple19I	CGATCG	1 cut(s)	74
PleI	GAGTC	2 cut(s)	15, 464
PpsI	GAGTC	2 cut(s)	15, 464
PpuMI	RGGWCCY	1 cut(s)	374
Psp5II	RGGWCCY	1 cut(s)	374
PspN4I	GGNNCC	3 cut(s)	109, 127, 375
PspPI	GGNCC	3 cut(s)	108, 126, 374
PspPPI	RGGWCCY	1 cut(s)	374
PvuI	CGATCG	1 cut(s)	74
RsaI	GTAC	2 cut(s)	170, 362
RsaNI	GTAC	2 cut(s)	169, 361
SapI	GCTCTTC	1 cut(s)	606
SaqAI	TTAA	2 cut(s)	381, 453
SatI	GCNGC	2 cut(s)	34, 37
Sau3AI	GATC	5 cut(s)	71, 75, 143, 193, 750
Sau96I	GGNCC	3 cut(s)	108, 126, 374
SchI	GAGTC	2 cut(s)	16, 464
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	2 cut(s)	548, 639
SetI	ASST	6 cut(s)	30, 369, 388, 534, 778, 804
SfaNI	GCATC	3 cut(s)	5, 454, 577
SfcI	CTRYAG	1 cut(s)	603
SfuI	TTCGAA	2 cut(s)	209, 767
SgrAI	CRCCGGYG	1 cut(s)	325
SinI	GGWCC	3 cut(s)	108, 126, 374
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	6 cut(s)	132, 157, 494, 664, 695, 729
SseBI	AGGCCT	1 cut(s)	574
SsiI	CCGC	5 cut(s)	34, 37, 296, 329, 347
SspI	AATATT	1 cut(s)	320
SspMI	CTAG	2 cut(s)	153, 803
StuI	AGGCCT	1 cut(s)	574
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	2 cut(s)	164, 528
TaaI	ACNGT	4 cut(s)	49, 130, 173, 595
TaqI	TCGA	6 cut(s)	13, 74, 142, 209, 688, 767
TasI	AATT	6 cut(s)	132, 157, 494, 664, 695, 729
TauI	GCSGC	2 cut(s)	36, 39
TfiI	GAWTC	2 cut(s)	139, 290
Tru1I	TTAA	2 cut(s)	381, 453
Tru9I	TTAA	2 cut(s)	381, 453
TscAI	CASTG	2 cut(s)	250, 423
TseFI	GTSAC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	7 cut(s)	72, 77, 243, 249, 426, 587, 642
TspRI	CASTG	2 cut(s)	250, 423
VpaK11BI	GGWCC	3 cut(s)	108, 126, 374
XapI	RAATTY	2 cut(s)	157, 494
XceI	RCATGY	1 cut(s)	620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XspI	CTAG	2 cut(s)	153, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.