Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006560

Physical Location & Seq

Genomic Coordinates Forward (+)

89397199 .. 89400074

Gene Structure 2876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCGAATCGACGGTGCCTCCAACTCCTAACCCGCCGCGTCTCCGCCCTATTCTCAGCCAACCCTCCATTCCACACACTCTCAACCCCACCTCCTCCCCTCTCTACCCATCAACCCCTCAAAGCCCTCATCTCCAACTCCCCACTCGTTTTCACCCCCCATTGGTCCGCCCACACCCGCCATTTCTCGTCGCACCGAAACGATAACGTAAATGAGGGCAGCCAAGACGACGACGACGATGATGAAATTGGGTACAGTAGTGACGACGGGAGTTTATCGAAGGGTGGTGGGTCGAAAAGAGAGTACACGGCGGAGGAGATGGAGGCGGAGGCGGCGGGTATTGGGTACAAAGTGGTTGGGCCGCTTGAGAAGACTGATGATGGGGTTTTCAAGCCCTATGAACCCGTTTTCGCTGTCATTCAGATTGGTTCGCATCAGTTCAAAGTTAGTAATGGGGACTCCATTTTCACCGAAAGGTTGAAGTTTTGCGAGGTCAATGATAAGTTGATATTGAATAAGGTTCTCTTGGTGGGCACAAGTAGTCAGACAATGATCGGCAGGCCAATAGTTCCTGATGCAGCAGTTCATGCAGTTGTTGAAGAGCATGCATTAGATGCAAAGGTACTTATTTTTAAGAAAAAGAGGAGGAAGAATTACCGTCGGACCAAAGGTCATCGCCAAGAATTAACCAAGTTGAGGATTATTGATATTCAAGGGATTCAGAAACCAGAACCTGTAGTCACCGAAAAACCTTCAAAGGCACCTGGTAAGAAGCCAGAAAAGGTTGCAGTTGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009566 GO:0009567 GO:0009987 GO:0010197 GO:0016043 GO:0019953 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0051704 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

266

Amino Acids

29.42

Weight (kDa)

9.07

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21p	PF00829	137 - 237	6.5e-32	Ribosomal prokaryotic L21 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30930
fragaria_vesca	FvH4_3g09190
malus_domestica	MD05G1312600.v1.1 MD10G1294400.v1.1
prunus_persica	Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1
pyrus_communis	pycom05g29050 pycom10g24610
rosa_chinensis	RchiOBHm_Chr5g0008411
rosa_laevigata	RLG00000031342 RLG00000031387 RLG00000031569 RLG00000035355
rosa_multiflora	Rmu_sc0004326.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068080
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064300 Rh5BG061500 Rh5CG071400 Rh5CG071700 Rh5DG060400 Rh5DG064100
rosa_wichuraiana	Rw5G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	15, 760
AccII	CGCG	1 cut(s)	39
AfaI	GTAC	4 cut(s)	254, 305, 347, 624
AfiI	CCNNNNNNNGG	2 cut(s)	162, 696
AgsI	TTSAA	7 cut(s)	391, 442, 481, 514, 599, 713, 756
AhdI	GACNNNNNGTC	1 cut(s)	669
AjnI	CCWGG	1 cut(s)	763
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
Alw26I	GTCTC	1 cut(s)	46
AlwNI	CAGNNNCTG	2 cut(s)	734, 794
AoxI	GGCC	2 cut(s)	359, 560
ApeKI	GCWGC	3 cut(s)	219, 578, 794
AspS9I	GGNCC	3 cut(s)	165, 359, 663
AsuHPI	GGTGA	3 cut(s)	145, 460, 733
AvaII	GGWCC	2 cut(s)	165, 663
BaeGI	GKGCMC	1 cut(s)	536
BaeI	ACNNNNGTAYC	2 cut(s)	244, 277
BanI	GGYRCC	2 cut(s)	15, 760
BbsI	GAAGAC	1 cut(s)	377
BbvI	GCAGC	3 cut(s)	231, 590, 781
BccI	CCATC	3 cut(s)	117, 313, 374
BceAI	ACGGC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	765
BcoDI	GTCTC	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	735
BisI	GCNGC	6 cut(s)	37, 220, 333, 362, 579, 795
BlsI	GCNGC	6 cut(s)	38, 221, 334, 363, 580, 796
Bme1390I	CCNGG	1 cut(s)	765
Bme18I	GGWCC	2 cut(s)	165, 663
BmeRI	GACNNNNNGTC	1 cut(s)	669
BmgT120I	GGNCC	3 cut(s)	165, 359, 663
BmiI	GGNNCC	2 cut(s)	17, 762
BmrFI	CCNGG	1 cut(s)	765
BmsI	GCATC	3 cut(s)	442, 565, 604
BpiI	GAAGAC	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	386
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 76, 106
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 696
BseBI	CCWGG	1 cut(s)	765
BseLI	CCNNNNNNNGG	2 cut(s)	162, 696
BseMII	CTCAG	1 cut(s)	69
BseRI	GAGGAG	3 cut(s)	84, 329, 658
BseSI	GKGCMC	1 cut(s)	536
BseXI	GCAGC	3 cut(s)	231, 590, 781
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	361, 562
BshNI	GGYRCC	2 cut(s)	15, 760
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	162, 696
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	2 cut(s)	361, 562
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp143I	GATC	1 cut(s)	552
BspANI	GGCC	2 cut(s)	361, 562
BspCNI	CTCAG	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	17, 762
BspQI	GCTCTTC	1 cut(s)	594
BspT107I	GGYRCC	2 cut(s)	15, 760
BssMI	GATC	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	3 cut(s)	15, 257, 659
Bst6I	CTCTTC	1 cut(s)	594
BstAPI	GCANNNNNTGC	3 cut(s)	587, 614, 794
BstC8I	GCNNGC	2 cut(s)	560, 606
BstDEI	CTNAG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	555
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	552
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 587, 614, 794
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	1 cut(s)	608
BstSCI	CCNGG	1 cut(s)	763
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	1 cut(s)	536
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	3 cut(s)	231, 590, 781
BstV2I	GAAGAC	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	361, 562
BtgZI	GCGATG	1 cut(s)	659
Cac8I	GCNNGC	2 cut(s)	560, 606
CaiI	CAGNNNCTG	2 cut(s)	734, 794
Cfr13I	GGNCC	3 cut(s)	165, 359, 663
CseI	GACGC	1 cut(s)	28
CsiI	ACCWGGT	1 cut(s)	763
Csp6I	GTAC	4 cut(s)	253, 304, 346, 623
CviAII	CATG	2 cut(s)	587, 605
CviJI	RGCY	7 cut(s)	59, 125, 222, 361, 394, 562, 775
CviKI_1	RGCY	7 cut(s)	59, 125, 222, 361, 394, 562, 775
CviQI	GTAC	4 cut(s)	253, 304, 346, 623
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	1 cut(s)	554
DpnII	GATC	1 cut(s)	552
DriI	GACNNNNNGTC	1 cut(s)	669
Eam1104I	CTCTTC	1 cut(s)	594
Eam1105I	GACNNNNNGTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	594
EciI	GGCGGA	4 cut(s)	34, 157, 326, 341
Eco47I	GGWCC	2 cut(s)	165, 663
EcoRII	CCWGG	1 cut(s)	763
EcoT22I	ATGCAT	1 cut(s)	610
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	2 cut(s)	590, 608
FaiI	YATR	4 cut(s)	399, 588, 606, 799
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	2 cut(s)	586, 604
FauI	CCCGC	3 cut(s)	41, 185, 328
Fnu4HI	GCNGC	6 cut(s)	37, 220, 333, 362, 579, 795
Fsp4HI	GCNGC	6 cut(s)	37, 220, 333, 362, 579, 795
GluI	GCNGC	6 cut(s)	37, 220, 333, 362, 579, 795
HaeIII	GGCC	2 cut(s)	361, 562
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	590, 608
HinfI	GANTC	3 cut(s)	7, 458, 718
HphI	GGTGA	3 cut(s)	145, 460, 733
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	4 cut(s)	423, 546, 663, 723
Hpy188III	TCNNGA	1 cut(s)	572
Hpy8I	GTNNAC	1 cut(s)	306
Hpy99I	CGWCG	7 cut(s)	15, 193, 233, 236, 239, 269, 663
HpyAV	CCTTC	2 cut(s)	274, 762
HpyCH4III	ACNGT	3 cut(s)	15, 257, 659
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	6 cut(s)	578, 590, 608, 617, 788, 797
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 587, 614, 794
HpyF3I	CTNAG	1 cut(s)	55
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	590, 608
Kzo9I	GATC	1 cut(s)	552
LguI	GCTCTTC	1 cut(s)	594
LpnPI	CCDG	7 cut(s)	544, 585, 741, 747, 750, 777, 789
Lsp1109I	GCAGC	3 cut(s)	231, 590, 781
LweI	GCATC	3 cut(s)	442, 565, 604
MabI	ACCWGGT	1 cut(s)	763
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	260, 739
MalI	GATC	1 cut(s)	554
MboI	GATC	1 cut(s)	552
MboII	GAAGA	3 cut(s)	382, 611, 661
MhlI	GDGCHC	1 cut(s)	536
MluCI	AATT	3 cut(s)	246, 652, 683
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	3 cut(s)	46, 159, 641
Mph1103I	ATGCAT	1 cut(s)	610
MseI	TTAA	2 cut(s)	633, 686
MspR9I	CCNGG	1 cut(s)	765
MvaI	CCWGG	1 cut(s)	765
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	4 cut(s)	332, 587, 614, 794
NdeII	GATC	1 cut(s)	552
NlaIII	CATG	2 cut(s)	590, 608
NlaIV	GGNNCC	2 cut(s)	17, 762
NmuCI	GTSAC	2 cut(s)	260, 739
NsiI	ATGCAT	1 cut(s)	610
NspI	RCATGY	1 cut(s)	608
PaeI	GCATGC	1 cut(s)	608
PciSI	GCTCTTC	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	7, 718
PkrI	GCNGC	6 cut(s)	38, 221, 334, 363, 580, 796
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	763
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	2 cut(s)	17, 762
PspPI	GGNCC	3 cut(s)	165, 359, 663
PstNI	CAGNNNCTG	2 cut(s)	734, 794
RsaI	GTAC	4 cut(s)	254, 305, 347, 624
RsaNI	GTAC	4 cut(s)	253, 304, 346, 623
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	2 cut(s)	633, 686
SatI	GCNGC	6 cut(s)	37, 220, 333, 362, 579, 795
Sau3AI	GATC	1 cut(s)	552
Sau96I	GGNCC	3 cut(s)	165, 359, 663
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	765
SduI	GDGCHC	1 cut(s)	536
SexAI	ACCWGGT	1 cut(s)	763
SfaNI	GCATC	3 cut(s)	442, 565, 604
SfcI	CTRYAG	1 cut(s)	735
SinI	GGWCC	2 cut(s)	165, 663
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SphI	GCATGC	1 cut(s)	608
Sse9I	AATT	3 cut(s)	246, 652, 683
StyD4I	CCNGG	1 cut(s)	763
TaaI	ACNGT	3 cut(s)	15, 257, 659
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	3 cut(s)	10, 278, 293
TasI	AATT	3 cut(s)	246, 652, 683
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	3 cut(s)	39, 335, 364
TfiI	GAWTC	2 cut(s)	7, 718
Tru1I	TTAA	2 cut(s)	633, 686
Tru9I	TTAA	2 cut(s)	633, 686
TseFI	GTSAC	2 cut(s)	260, 739
TseI	GCWGC	3 cut(s)	219, 578, 794
Tsp45I	GTSAC	2 cut(s)	260, 739
TspDTI	ATGAA	3 cut(s)	258, 414, 575
VpaK11BI	GGWCC	2 cut(s)	165, 663
XceI	RCATGY	1 cut(s)	608
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.