Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006560

Physical Location & Seq

Genomic Coordinates Forward (+)

5360427 .. 5363250

Gene Structure 2824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCAAATCGACGGTGCCTCCAGCTCCTGACCCGCCGCGTCTCCGCCCTGTTCTCAGCCAACCCTCCACTCCACACCCTCTCCACCCCACCTCCCCTCTCTACCCATGAACCTCTCAAAGCCCTCGTCTCCAAATCCCCACTCATTTTCAGCCCCAATTGGTCCGCCCCGACCCGCCATTTCTCGTCGGACCGAAACGACGGCGTAGACGACAGCGAAGATGACGACGACGATGACGATGAAGATGATGACATTGGGTATAGCAGTGACGATGGGAGCTTATCGAAAGGCGGTGGTTCGAAACGAGAGTACACGCCGGAGGAGATGGCGGCGGAGGCGGCGGGTATTGGGTACAAAGTGGTGGGCCCGCTTGAGACGACTGATGGGGTTTTCAAGCCCTATGAGCCCGTTTTCGCTGTGATTCAGATTGGTTCGCATCAGTTCAAAGTTAGTAATGGGGACTCCATTTTCACTGAAAGATTGAAGTTTTGCGAGGTGAATGATAAGTTGATATTGAACAAAGTTCTCTTGGTGGGCACAAGTAGTCAGACAATGATCGGAAGGCCAATAGTTCCAGATGCAACAGTTCATGCAGTTGTTGAAGAGCATGCATTAGATGCAAAGGTTCTTATTTTTAAGAAAAAGAGGAGAAAGAATTACCGTCGGACCAAAGGTCATCGCCAGGAATTAACCAAGTTGAGGATCATTGATATTCAAGGGATTCAGAAGCCAGAACCTGTAGTCACCGAAAAACCTTCAAAGACACATGGTAAGAAGCCAGAAAAGGTTGCAGTTGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009566 GO:0009567 GO:0009987 GO:0010197 GO:0016043 GO:0019953 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0051704 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

268

Amino Acids

29.47

Weight (kDa)

6.72

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21p	PF00829	138 - 238	3.6e-32	Ribosomal prokaryotic L21 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30930
fragaria_vesca	FvH4_3g09190
malus_domestica	MD05G1312600.v1.1 MD10G1294400.v1.1
prunus_persica	Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1
pyrus_communis	pycom05g29050 pycom10g24610
rosa_chinensis	RchiOBHm_Chr5g0008411
rosa_laevigata	RLG00000031342 RLG00000031387 RLG00000031569 RLG00000035355
rosa_multiflora	Rmu_sc0004326.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068080
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064300 Rh5BG061500 Rh5CG071400 Rh5CG071700 Rh5DG060400 Rh5DG064100
rosa_wichuraiana	Rw5G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	39
AclWI	GGATC	1 cut(s)	710
AfaI	GTAC	2 cut(s)	311, 353
AfiI	CCNNNNNNNGG	1 cut(s)	699
AgsI	TTSAA	7 cut(s)	394, 445, 484, 517, 602, 716, 759
AhdI	GACNNNNNGTC	1 cut(s)	672
AjnI	CCWGG	1 cut(s)	681
AluBI	AGCT	2 cut(s)	25, 279
AluI	AGCT	2 cut(s)	25, 279
Alw26I	GTCTC	3 cut(s)	46, 133, 368
AlwI	GGATC	1 cut(s)	710
AlwNI	CAGNNNCTG	3 cut(s)	28, 737, 797
AoxI	GGCC	2 cut(s)	364, 563
ApaI	GGGCCC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	797
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
AspS9I	GGNCC	5 cut(s)	162, 190, 364, 365, 666
AsuHPI	GGTGA	2 cut(s)	508, 736
AsuII	TTCGAA	1 cut(s)	299
AvaII	GGWCC	3 cut(s)	162, 190, 666
BaeGI	GKGCMC	2 cut(s)	368, 539
BanI	GGYRCC	1 cut(s)	15
BanII	GRGCYC	2 cut(s)	368, 408
BbvI	GCAGC	1 cut(s)	784
BccI	CCATC	3 cut(s)	266, 319, 377
BceAI	ACGGC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	683
BcoDI	GTCTC	3 cut(s)	46, 133, 368
BfmI	CTRYAG	1 cut(s)	738
BisI	GCNGC	4 cut(s)	37, 330, 339, 798
BlsI	GCNGC	4 cut(s)	38, 331, 340, 799
Bme1390I	CCNGG	1 cut(s)	683
Bme18I	GGWCC	3 cut(s)	162, 190, 666
BmeRI	GACNNNNNGTC	1 cut(s)	672
BmgT120I	GGNCC	5 cut(s)	162, 190, 364, 365, 666
BmiI	GGNNCC	2 cut(s)	17, 366
BmrFI	CCNGG	1 cut(s)	683
BmsI	GCATC	3 cut(s)	445, 568, 607
BpmI	CTGGAG	1 cut(s)	5
Bpu14I	TTCGAA	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	392
BsaXI	ACNNNNNCTCC	5 cut(s)	33, 65, 76, 95, 106
Bsc4I	CCNNNNNNNGG	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	683
BseLI	CCNNNNNNNGG	1 cut(s)	699
BseMII	CTCAG	1 cut(s)	69
BseRI	GAGGAG	2 cut(s)	335, 661
BseSI	GKGCMC	2 cut(s)	368, 539
BseXI	GCAGC	1 cut(s)	784
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	366, 565
BshNI	GGYRCC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	1 cut(s)	699
BsmAI	GTCTC	3 cut(s)	46, 133, 368
BsmBI	CGTCTC	3 cut(s)	46, 133, 368
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	366, 565
Bsp119I	TTCGAA	1 cut(s)	299
Bsp120I	GGGCCC	1 cut(s)	364
Bsp1286I	GDGCHC	3 cut(s)	368, 408, 539
Bsp143I	GATC	2 cut(s)	555, 702
BspANI	GGCC	2 cut(s)	366, 565
BspCNI	CTCAG	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	17, 366
BspPI	GGATC	1 cut(s)	710
BspQI	GCTCTTC	1 cut(s)	597
BspT104I	TTCGAA	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	15
BssMI	GATC	2 cut(s)	555, 702
Bst2UI	CCWGG	1 cut(s)	683
Bst4CI	ACNGT	3 cut(s)	15, 586, 662
Bst6I	CTCTTC	1 cut(s)	597
BstAPI	GCANNNNNTGC	2 cut(s)	617, 797
BstBI	TTCGAA	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	368, 609
BstDEI	CTNAG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	558, 705
BstMAI	GTCTC	3 cut(s)	46, 133, 368
BstMBI	GATC	2 cut(s)	555, 702
BstMWI	GCNNNNNNNGC	5 cut(s)	335, 338, 403, 617, 797
BstNI	CCWGG	1 cut(s)	683
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	1 cut(s)	681
BstSFI	CTRYAG	1 cut(s)	738
BstSLI	GKGCMC	2 cut(s)	368, 539
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	784
BsuRI	GGCC	2 cut(s)	366, 565
BtgZI	GCGATG	1 cut(s)	662
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	2 cut(s)	271, 471
Cac8I	GCNNGC	2 cut(s)	368, 609
CaiI	CAGNNNCTG	3 cut(s)	28, 737, 797
Cfr13I	GGNCC	5 cut(s)	162, 190, 364, 365, 666
CpoI	CGGWCCG	1 cut(s)	190
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	310, 352
CspI	CGGWCCG	1 cut(s)	190
CviAII	CATG	4 cut(s)	107, 590, 608, 767
CviQI	GTAC	2 cut(s)	310, 352
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	2 cut(s)	557, 704
DpnII	GATC	2 cut(s)	555, 702
DriI	GACNNNNNGTC	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	597
Eam1105I	GACNNNNNGTC	1 cut(s)	672
EarI	CTCTTC	1 cut(s)	597
EciI	GGCGGA	3 cut(s)	34, 154, 347
Eco24I	GRGCYC	2 cut(s)	368, 408
Eco47I	GGWCC	3 cut(s)	162, 190, 666
EcoRII	CCWGG	1 cut(s)	681
EcoT22I	ATGCAT	1 cut(s)	613
EcoT38I	GRGCYC	2 cut(s)	368, 408
Esp3I	CGTCTC	3 cut(s)	46, 133, 368
FaeI	CATG	4 cut(s)	110, 593, 611, 770
FaiI	YATR	7 cut(s)	108, 261, 402, 591, 609, 768, 802
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	4 cut(s)	106, 589, 607, 766
FauI	CCCGC	4 cut(s)	41, 182, 334, 375
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	4 cut(s)	37, 330, 339, 798
FriOI	GRGCYC	2 cut(s)	368, 408
Fsp4HI	GCNGC	4 cut(s)	37, 330, 339, 798
GluI	GCNGC	4 cut(s)	37, 330, 339, 798
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	366, 565
HapII	CCGG	1 cut(s)	317
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	4 cut(s)	110, 593, 611, 770
HinfI	GANTC	3 cut(s)	421, 461, 721
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	2 cut(s)	508, 736
Hpy166II	GTNNAC	2 cut(s)	208, 312
Hpy188I	TCNGA	6 cut(s)	190, 426, 549, 560, 666, 726
Hpy188III	TCNNGA	2 cut(s)	28, 575
Hpy8I	GTNNAC	2 cut(s)	208, 312
Hpy99I	CGWCG	6 cut(s)	15, 190, 203, 230, 233, 666
HpyAV	CCTTC	2 cut(s)	555, 765
HpyCH4III	ACNGT	3 cut(s)	15, 586, 662
HpyCH4V	TGCA	6 cut(s)	581, 593, 611, 620, 791, 800
HpyF10VI	GCNNNNNNNGC	5 cut(s)	335, 338, 403, 617, 797
HpyF3I	CTNAG	1 cut(s)	55
Hsp92II	CATG	4 cut(s)	110, 593, 611, 770
Kzo9I	GATC	2 cut(s)	555, 702
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	2 cut(s)	30, 276
Lsp1109I	GCAGC	1 cut(s)	784
LweI	GCATC	3 cut(s)	445, 568, 607
MaeIII	GTNAC	2 cut(s)	266, 742
MalI	GATC	2 cut(s)	557, 704
MboI	GATC	2 cut(s)	555, 702
MboII	GAAGA	3 cut(s)	230, 254, 614
MfeI	CAATTG	1 cut(s)	157
MhlI	GDGCHC	3 cut(s)	368, 408, 539
MluCI	AATT	3 cut(s)	157, 655, 686
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	2 cut(s)	168, 644
Mph1103I	ATGCAT	1 cut(s)	613
MseI	TTAA	2 cut(s)	636, 689
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	683
MunI	CAATTG	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	683
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	5 cut(s)	335, 338, 403, 617, 797
NdeII	GATC	2 cut(s)	555, 702
NlaIII	CATG	4 cut(s)	110, 593, 611, 770
NlaIV	GGNNCC	2 cut(s)	17, 366
NmuCI	GTSAC	2 cut(s)	266, 742
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	1 cut(s)	611
NspV	TTCGAA	1 cut(s)	299
PaeI	GCATGC	1 cut(s)	611
PciSI	GCTCTTC	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 234
PfeI	GAWTC	2 cut(s)	421, 721
PkrI	GCNGC	4 cut(s)	38, 331, 340, 799
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	681
PspGI	CCWGG	1 cut(s)	681
PspN4I	GGNNCC	2 cut(s)	17, 366
PspOMI	GGGCCC	1 cut(s)	364
PspPI	GGNCC	5 cut(s)	162, 190, 364, 365, 666
PstNI	CAGNNNCTG	3 cut(s)	28, 737, 797
RsaI	GTAC	2 cut(s)	311, 353
RsaNI	GTAC	2 cut(s)	310, 352
Rsr2I	CGGWCCG	1 cut(s)	190
RsrII	CGGWCCG	1 cut(s)	190
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	2 cut(s)	636, 689
SatI	GCNGC	4 cut(s)	37, 330, 339, 798
Sau3AI	GATC	2 cut(s)	555, 702
Sau96I	GGNCC	5 cut(s)	162, 190, 364, 365, 666
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	683
SduI	GDGCHC	3 cut(s)	368, 408, 539
SfaNI	GCATC	3 cut(s)	445, 568, 607
SfcI	CTRYAG	1 cut(s)	738
SfuI	TTCGAA	1 cut(s)	299
SinI	GGWCC	3 cut(s)	162, 190, 666
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	3 cut(s)	157, 655, 686
StyD4I	CCNGG	1 cut(s)	681
TaaI	ACNGT	3 cut(s)	15, 586, 662
TaqI	TCGA	3 cut(s)	10, 284, 299
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	3 cut(s)	157, 655, 686
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	3 cut(s)	39, 332, 341
TfiI	GAWTC	2 cut(s)	421, 721
Tru1I	TTAA	2 cut(s)	636, 689
Tru9I	TTAA	2 cut(s)	636, 689
TscAI	CASTG	2 cut(s)	271, 478
TseFI	GTSAC	2 cut(s)	266, 742
TseI	GCWGC	1 cut(s)	797
Tsp45I	GTSAC	2 cut(s)	266, 742
TspDTI	ATGAA	3 cut(s)	123, 255, 578
TspRI	CASTG	2 cut(s)	271, 478
VpaK11BI	GGWCC	3 cut(s)	162, 190, 666
XceI	RCATGY	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.