Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006560

Physical Location & Seq

Genomic Coordinates Reverse (-)

2265470 .. 2267995

Gene Structure 2526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G047500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTTCATGGCGAACCGACGGCGCCTCCAAGTTCTGACCCGCCACGCCTCAGCCCTCTTCTCCACAAACACTACATTCCAGTCCCTCCAAACTACACCTCCCCTCCCCATCTATCAACCCCTCAAAACCCTCACCTCCAAATTCCCTCTCATTTTCACTAACCCCGATCCCAATTGGTCGCAAACCCGCCATTTCTCGTCGAGCCGAATCGGAGATGTGAATGAAGACAATGAGCATAGTGAAGAAGAAGATGATGATGACGACGATGACGATTATGATGATGATGATGAAGCAGTTGGGGATAGTGAGGACGAGAGTGTTTCTGGGTGCGGCTCGAAAAGGGAGTATACTGCGGAGGAGAAAGAGGCGGAGGCCGCCGCTATTGGGTACCAGGTGATTGGGCCTCTTCAGAAATCTGATCGGGTTTTCAAACCGTATGAGCCGGTTTTCGCTGTGGTTCAGGTTCGGATTGGTTCGCATCAGTTCAAGGTTAGCAATGGGGACTGCATTTTCACTGAAAGATTGAAGTTCTGTGAAGTGAATGATAAGTTAATATTGAACAAGGTTCTCTTGCTGGGCTCAAGTAGTCAGACAATAATCGGTAGGCCCCTACTACCAGATGCAGCAGTTCATGCAGTTGTTGAGGAGCACGCATTAGATGCAAAGGTAATTATTTTTAAGAAAAAGAGAAGGAAGAATTATCGTCGAACCAAAGGACATCGCCAGGAATTGACGAAGTTGAGGATAGTTGATGTTCAAGGGATTGAGAAACCAGAAGTCCCTGAAAAGCCTCCAAAAGCACCTGGTAGGAAGCCAGAAAAGGTTGCTGTTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009566 GO:0009567 GO:0009987 GO:0010197 GO:0016043 GO:0019953 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0051704 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

280

Amino Acids

31.45

Weight (kDa)

5.74

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30930
fragaria_vesca	FvH4_3g09190
malus_domestica	MD05G1312600.v1.1 MD10G1294400.v1.1
prunus_persica	Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1
pyrus_communis	pycom05g29050 pycom10g24610
rosa_chinensis	RchiOBHm_Chr5g0008411
rosa_laevigata	RLG00000031342 RLG00000031387 RLG00000031569 RLG00000035355
rosa_multiflora	Rmu_sc0004326.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068080
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064300 Rh5BG061500 Rh5CG071400 Rh5CG071700 Rh5DG060400 Rh5DG064100
rosa_wichuraiana	Rw5G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	387
AccB1I	GGYRCC	2 cut(s)	21, 387
AccI	GTMKAC	1 cut(s)	347
AciI	CCGC	7 cut(s)	40, 187, 330, 353, 368, 375, 378
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	384
AgsI	TTSAA	5 cut(s)	430, 487, 526, 559, 758
AjnI	CCWGG	3 cut(s)	390, 723, 802
Alw21I	GWGCWC	1 cut(s)	651
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	3 cut(s)	372, 401, 605
ApeKI	GCWGC	2 cut(s)	623, 833
ApoI	RAATTY	1 cut(s)	140
Asp718I	GGTACC	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	401, 606
AsuHPI	GGTGA	2 cut(s)	124, 406
BanI	GGYRCC	2 cut(s)	21, 387
BanII	GRGCYC	1 cut(s)	581
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	651
BbvCI	CCTCAGC	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	635, 820
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	3 cut(s)	392, 725, 804
BfoI	RGCGCY	1 cut(s)	25
BisI	GCNGC	5 cut(s)	331, 375, 378, 624, 834
BlsI	GCNGC	5 cut(s)	332, 376, 379, 625, 835
Bme1390I	CCNGG	3 cut(s)	392, 725, 804
BmgT120I	GGNCC	2 cut(s)	401, 606
BmiI	GGNNCC	3 cut(s)	23, 389, 608
BmrFI	CCNGG	3 cut(s)	392, 725, 804
BmsI	GCATC	3 cut(s)	487, 610, 649
BpiI	GAAGAC	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	565
BsaHI	GRCGYC	1 cut(s)	22
BsaXI	ACNNNNNCTCC	6 cut(s)	9, 39, 82, 87, 112, 117
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse118I	RCCGGY	1 cut(s)	442
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	502
BseBI	CCWGG	3 cut(s)	392, 725, 804
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	2 cut(s)	371, 659
BseXI	GCAGC	2 cut(s)	635, 820
BseYI	CCCAGC	1 cut(s)	574
BshFI	GGCC	3 cut(s)	374, 403, 607
BshNI	GGYRCC	2 cut(s)	21, 387
BsiHKAI	GWGCWC	1 cut(s)	651
BsiSI	CCGG	1 cut(s)	443
BslFI	GGGAC	3 cut(s)	67, 515, 764
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmFI	GGGAC	3 cut(s)	67, 515, 764
BsnI	GGCC	3 cut(s)	374, 403, 607
Bsp1286I	GDGCHC	2 cut(s)	581, 651
Bsp143I	GATC	2 cut(s)	166, 418
BspACI	CCGC	7 cut(s)	40, 187, 330, 353, 368, 375, 378
BspANI	GGCC	3 cut(s)	374, 403, 607
BspCNI	CTCAG	1 cut(s)	62
BspLI	GGNNCC	3 cut(s)	23, 389, 608
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	2 cut(s)	21, 387
BsrDI	GCAATG	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	442
BssMI	GATC	2 cut(s)	166, 418
BssNAI	GTATAC	1 cut(s)	348
BssNI	GRCGYC	1 cut(s)	22
Bst1107I	GTATAC	1 cut(s)	348
Bst2UI	CCWGG	3 cut(s)	392, 725, 804
Bst4CI	ACNGT	1 cut(s)	435
Bst6I	CTCTTC	2 cut(s)	62, 411
BstACI	GRCGYC	1 cut(s)	22
BstAPI	GCANNNNNTGC	2 cut(s)	632, 659
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	2 cut(s)	49, 837
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	2 cut(s)	169, 421
BstMBI	GATC	2 cut(s)	166, 418
BstMWI	GCNNNNNNNGC	4 cut(s)	374, 632, 659, 833
BstNI	CCWGG	3 cut(s)	392, 725, 804
BstSCI	CCNGG	3 cut(s)	390, 723, 802
BstV1I	GCAGC	2 cut(s)	635, 820
BstV2I	GAAGAC	1 cut(s)	231
BstXI	CCANNNNNNTGG	1 cut(s)	398
BstZ17I	GTATAC	1 cut(s)	348
BsuRI	GGCC	3 cut(s)	374, 403, 607
BtgZI	GCGATG	1 cut(s)	704
BtsIMutI	CAGTG	1 cut(s)	513
Cac8I	GCNNGC	1 cut(s)	651
CfoI	GCGC	1 cut(s)	24
Cfr10I	RCCGGY	1 cut(s)	442
Cfr13I	GGNCC	2 cut(s)	401, 606
CsiI	ACCWGGT	2 cut(s)	390, 802
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	2 cut(s)	7, 632
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	2 cut(s)	49, 837
DinI	GGCGCC	1 cut(s)	23
DpnI	GATC	2 cut(s)	168, 420
DpnII	GATC	2 cut(s)	166, 418
Eam1104I	CTCTTC	2 cut(s)	62, 411
EarI	CTCTTC	2 cut(s)	62, 411
EciI	GGCGGA	1 cut(s)	383
Eco24I	GRGCYC	1 cut(s)	581
Eco57I	CTGAAG	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	606
EcoRII	CCWGG	3 cut(s)	390, 723, 802
EcoT38I	GRGCYC	1 cut(s)	581
EgeI	GGCGCC	1 cut(s)	23
EheI	GGCGCC	1 cut(s)	23
FaeI	CATG	2 cut(s)	10, 635
FaiI	YATR	6 cut(s)	8, 237, 276, 348, 438, 633
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	3 cut(s)	67, 515, 764
FatI	CATG	2 cut(s)	6, 631
FauI	CCCGC	2 cut(s)	47, 194
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	5 cut(s)	331, 375, 378, 624, 834
FriOI	GRGCYC	1 cut(s)	581
Fsp4HI	GCNGC	5 cut(s)	331, 375, 378, 624, 834
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	5 cut(s)	331, 375, 378, 624, 834
GsaI	CCCAGC	1 cut(s)	578
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	3 cut(s)	374, 403, 607
HapII	CCGG	1 cut(s)	443
HhaI	GCGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	10, 635
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	1 cut(s)	207
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	2 cut(s)	124, 406
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	6 cut(s)	36, 212, 411, 418, 468, 591
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	4 cut(s)	21, 202, 266, 708
HpyAV	CCTTC	1 cut(s)	684
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4V	TGCA	4 cut(s)	507, 623, 635, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	374, 632, 659, 833
HpyF3I	CTNAG	2 cut(s)	49, 837
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	10, 635
HspAI	GCGC	1 cut(s)	22
KasI	GGCGCC	1 cut(s)	21
KpnI	GGTACC	1 cut(s)	391
Kzo9I	GATC	2 cut(s)	166, 418
LmnI	GCTCC	1 cut(s)	646
Lsp1109I	GCAGC	2 cut(s)	635, 820
LweI	GCATC	3 cut(s)	487, 610, 649
MabI	ACCWGGT	2 cut(s)	390, 802
MalI	GATC	2 cut(s)	168, 420
MboI	GATC	2 cut(s)	166, 418
MboII	GAAGA	7 cut(s)	49, 236, 254, 257, 260, 398, 706
MfeI	CAATTG	1 cut(s)	172
MhlI	GDGCHC	2 cut(s)	581, 651
MluCI	AATT	5 cut(s)	140, 172, 669, 697, 728
Mly113I	GGCGCC	1 cut(s)	22
MseI	TTAA	2 cut(s)	551, 678
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	3 cut(s)	392, 725, 804
MunI	CAATTG	1 cut(s)	172
MvaI	CCWGG	3 cut(s)	392, 725, 804
MwoI	GCNNNNNNNGC	4 cut(s)	374, 632, 659, 833
NarI	GGCGCC	1 cut(s)	22
NdeII	GATC	2 cut(s)	166, 418
NlaIII	CATG	2 cut(s)	10, 635
NlaIV	GGNNCC	3 cut(s)	23, 389, 608
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	5 cut(s)	332, 376, 379, 625, 835
PluTI	GGCGCC	1 cut(s)	25
Psp6I	CCWGG	3 cut(s)	390, 723, 802
PspFI	CCCAGC	1 cut(s)	574
PspGI	CCWGG	3 cut(s)	390, 723, 802
PspN4I	GGNNCC	3 cut(s)	23, 389, 608
PspPI	GGNCC	2 cut(s)	401, 606
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SaqAI	TTAA	2 cut(s)	551, 678
SatI	GCNGC	5 cut(s)	331, 375, 378, 624, 834
Sau3AI	GATC	2 cut(s)	166, 418
Sau96I	GGNCC	2 cut(s)	401, 606
ScrFI	CCNGG	3 cut(s)	392, 725, 804
SduI	GDGCHC	2 cut(s)	581, 651
SetI	ASST	9 cut(s)	100, 137, 396, 465, 492, 567, 669, 805, 825
SexAI	ACCWGGT	2 cut(s)	390, 802
SfaNI	GCATC	3 cut(s)	487, 610, 649
SfoI	GGCGCC	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	580
SmoI	CTYRAG	1 cut(s)	580
Sse9I	AATT	5 cut(s)	140, 172, 669, 697, 728
SsiI	CCGC	7 cut(s)	40, 187, 330, 353, 368, 375, 378
SspDI	GGCGCC	1 cut(s)	21
SspI	AATATT	1 cut(s)	555
StyD4I	CCNGG	3 cut(s)	390, 723, 802
TaaI	ACNGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	200, 335, 706
TasI	AATT	5 cut(s)	140, 172, 669, 697, 728
TauI	GCSGC	3 cut(s)	333, 377, 380
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	2 cut(s)	551, 678
Tru9I	TTAA	2 cut(s)	551, 678
TscAI	CASTG	1 cut(s)	520
TseI	GCWGC	2 cut(s)	623, 833
TspDTI	ATGAA	3 cut(s)	237, 303, 620
TspRI	CASTG	1 cut(s)	520
XapI	RAATTY	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.