Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006560

Physical Location & Seq

Genomic Coordinates Reverse (-)

4670336 .. 4672965

Gene Structure 2630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031387

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCGAATCGACGGTGCCTCCAACTCCTGACGCGCCGCGTCTCCGCCGTATTCTCAGCCAACCCTCCATTCCATACCCTCTCAACCCCACCTTCTCCCCTCTCCACCCATCAACCCCTCAAAGCCCTCATCTCCAACTCCCCACTCGTTTTCACCCCCCATTGGTCCGCCCAGACCCGCCATTTCTCGTCGGACCGAAACGACGACGTAAATGAGGACAGTCAAGACGACGACGACGAAATCGGGTACAGTAGTGACGACGGGAGTTTATCCAAGGGTGGTGGGTCGAAAAGAGAGTACACGGCGGAGAAGATGGCGGCGGAGGCGGCGGGTATTGGGTACAAAGTGGTTGGGCCGCTTGAGAAGACTGATGATGGGGTTTTCAAGCCCTATGAATCCGTTTTCGCTGTCATTCAGATTGGTTCGCATCAGTTCAAAGTTAGTAATGGGGACTCCATTTTCACTGAAGGATTGAAATTTTGCGAGGTCAATGATAAGTTGATATTGAATAAGGTTCTCTTGGTGGGCACAAGTAGTCAGACAATGATCGGCAGGCCAATAGCATTAGATGCAAAGGTACTTATTTTTAAGAAAAAGAGGAGGAAGAATTACCGTCGGACCAAAGGTCATCGCCAAGAATTAACCAAGTTGAGGATTATTGATAGTCAAGGGATTCAGAAACCAGAACCTGTAGTCACCGAAAAACCTTCAAAGGCACCTGGTAAGAAGCCAGAAAAGGTTGCAGTTGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009566 GO:0009567 GO:0009987 GO:0010197 GO:0016043 GO:0019953 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0051704 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

252

Amino Acids

27.65

Weight (kDa)

9.46

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21p	PF00829	135 - 219	2.2e-18	Ribosomal prokaryotic L21 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30930
fragaria_vesca	FvH4_3g09190
malus_domestica	MD05G1312600.v1.1 MD10G1294400.v1.1
prunus_persica	Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1
pyrus_communis	pycom05g29050 pycom10g24610
rosa_chinensis	RchiOBHm_Chr5g0008411
rosa_laevigata	RLG00000031342 RLG00000031387 RLG00000031569 RLG00000035355
rosa_multiflora	Rmu_sc0004326.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068080
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064300 Rh5BG061500 Rh5CG071400 Rh5CG071700 Rh5DG060400 Rh5DG064100
rosa_wichuraiana	Rw5G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	15, 715
AccII	CGCG	2 cut(s)	34, 39
AcsI	RAATTY	1 cut(s)	476
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	4 cut(s)	248, 299, 341, 579
AfiI	CCNNNNNNNGG	2 cut(s)	162, 651
AgsI	TTSAA	5 cut(s)	385, 436, 475, 508, 711
AhdI	GACNNNNNGTC	1 cut(s)	624
AjnI	CCWGG	1 cut(s)	718
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
Alw26I	GTCTC	1 cut(s)	46
AlwNI	CAGNNNCTG	2 cut(s)	689, 749
AoxI	GGCC	2 cut(s)	353, 554
ApeKI	GCWGC	1 cut(s)	749
ApoI	RAATTY	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	4 cut(s)	165, 193, 353, 618
AsuHPI	GGTGA	2 cut(s)	145, 688
AvaII	GGWCC	3 cut(s)	165, 193, 618
BaeGI	GKGCMC	1 cut(s)	530
BaeI	ACNNNNGTAYC	2 cut(s)	238, 271
BanI	GGYRCC	2 cut(s)	15, 715
BbsI	GAAGAC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	736
BccI	CCATC	3 cut(s)	117, 307, 368
BceAI	ACGGC	2 cut(s)	32, 318
BciT130I	CCWGG	1 cut(s)	720
BcoDI	GTCTC	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	690
BisI	GCNGC	5 cut(s)	37, 318, 327, 356, 750
BlsI	GCNGC	5 cut(s)	38, 319, 328, 357, 751
Bme1390I	CCNGG	1 cut(s)	720
Bme18I	GGWCC	3 cut(s)	165, 193, 618
BmeRI	GACNNNNNGTC	1 cut(s)	624
BmgT120I	GGNCC	4 cut(s)	165, 193, 353, 618
BmiI	GGNNCC	2 cut(s)	17, 717
BmrFI	CCNGG	1 cut(s)	720
BmsI	GCATC	2 cut(s)	436, 559
BpiI	GAAGAC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	273
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 651
BseBI	CCWGG	1 cut(s)	720
BseDI	CCNNGG	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	162, 651
BseMII	CTCAG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	613
BseSI	GKGCMC	1 cut(s)	530
BseXI	GCAGC	1 cut(s)	736
Bsh1236I	CGCG	2 cut(s)	34, 39
BshFI	GGCC	2 cut(s)	355, 556
BshNI	GGYRCC	2 cut(s)	15, 715
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	2 cut(s)	162, 651
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	2 cut(s)	355, 556
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp143I	GATC	1 cut(s)	546
BspANI	GGCC	2 cut(s)	355, 556
BspCNI	CTCAG	1 cut(s)	68
BspFNI	CGCG	2 cut(s)	34, 39
BspLI	GGNNCC	2 cut(s)	17, 717
BspT107I	GGYRCC	2 cut(s)	15, 715
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	4 cut(s)	15, 221, 251, 614
BstAPI	GCANNNNNTGC	2 cut(s)	569, 749
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	1 cut(s)	55
BstFNI	CGCG	2 cut(s)	34, 39
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	1 cut(s)	549
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	546
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 326, 569, 749
BstNI	CCWGG	1 cut(s)	720
BstSCI	CCNGG	1 cut(s)	718
BstSFI	CTRYAG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	530
BstUI	CGCG	2 cut(s)	34, 39
BstV1I	GCAGC	1 cut(s)	736
BstV2I	GAAGAC	1 cut(s)	371
BsuRI	GGCC	2 cut(s)	355, 556
BtgZI	GCGATG	1 cut(s)	614
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	554
CaiI	CAGNNNCTG	2 cut(s)	689, 749
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	4 cut(s)	165, 193, 353, 618
CpoI	CGGWCCG	1 cut(s)	193
CseI	GACGC	2 cut(s)	28, 40
CsiI	ACCWGGT	1 cut(s)	718
Csp6I	GTAC	4 cut(s)	247, 298, 340, 578
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CspI	CGGWCCG	1 cut(s)	193
CviJI	RGCY	6 cut(s)	59, 125, 355, 388, 556, 730
CviKI_1	RGCY	6 cut(s)	59, 125, 355, 388, 556, 730
CviQI	GTAC	4 cut(s)	247, 298, 340, 578
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	1 cut(s)	548
DpnII	GATC	1 cut(s)	546
DriI	GACNNNNNGTC	1 cut(s)	624
Eam1105I	GACNNNNNGTC	1 cut(s)	624
EciI	GGCGGA	4 cut(s)	34, 157, 320, 335
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	3 cut(s)	165, 193, 618
Eco57I	CTGAAG	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	718
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	46
FaiI	YATR	3 cut(s)	75, 393, 754
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	1 cut(s)	464
FauI	CCCGC	2 cut(s)	185, 322
Fnu4HI	GCNGC	5 cut(s)	37, 318, 327, 356, 750
Fsp4HI	GCNGC	5 cut(s)	37, 318, 327, 356, 750
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	5 cut(s)	37, 318, 327, 356, 750
HaeIII	GGCC	2 cut(s)	355, 556
HgaI	GACGC	2 cut(s)	28, 40
HhaI	GCGC	1 cut(s)	36
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	4 cut(s)	7, 395, 452, 673
HphI	GGTGA	2 cut(s)	145, 688
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	5 cut(s)	193, 417, 540, 618, 678
Hpy188III	TCNNGA	2 cut(s)	28, 224
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	9 cut(s)	15, 193, 206, 209, 233, 236, 239, 263, 618
HpyAV	CCTTC	3 cut(s)	102, 461, 717
HpyCH4III	ACNGT	4 cut(s)	15, 221, 251, 614
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	572, 743, 752
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 326, 569, 749
HpyF3I	CTNAG	1 cut(s)	55
HpySE526I	ACGT	1 cut(s)	207
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	546
LpnPI	CCDG	8 cut(s)	41, 185, 538, 696, 702, 705, 732, 744
Lsp1109I	GCAGC	1 cut(s)	736
LweI	GCATC	2 cut(s)	436, 559
MabI	ACCWGGT	1 cut(s)	718
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	254, 694
MalI	GATC	1 cut(s)	548
MboI	GATC	1 cut(s)	546
MboII	GAAGA	3 cut(s)	322, 376, 616
MhlI	GDGCHC	1 cut(s)	530
MluCI	AATT	3 cut(s)	476, 607, 638
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	4 cut(s)	46, 159, 171, 596
MseI	TTAA	2 cut(s)	588, 641
MspR9I	CCNGG	1 cut(s)	720
MvaI	CCWGG	1 cut(s)	720
MvnI	CGCG	2 cut(s)	34, 39
MwoI	GCNNNNNNNGC	4 cut(s)	323, 326, 569, 749
NdeII	GATC	1 cut(s)	546
NlaIV	GGNNCC	2 cut(s)	17, 717
NmuCI	GTSAC	2 cut(s)	254, 694
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	7, 395, 673
PkrI	GCNGC	5 cut(s)	38, 319, 328, 357, 751
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	2 cut(s)	17, 717
PspPI	GGNCC	4 cut(s)	165, 193, 353, 618
PstNI	CAGNNNCTG	2 cut(s)	689, 749
RsaI	GTAC	4 cut(s)	248, 299, 341, 579
RsaNI	GTAC	4 cut(s)	247, 298, 340, 578
Rsr2I	CGGWCCG	1 cut(s)	193
RsrII	CGGWCCG	1 cut(s)	193
SaqAI	TTAA	2 cut(s)	588, 641
SatI	GCNGC	5 cut(s)	37, 318, 327, 356, 750
Sau3AI	GATC	1 cut(s)	546
Sau96I	GGNCC	4 cut(s)	165, 193, 353, 618
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	720
SduI	GDGCHC	1 cut(s)	530
SexAI	ACCWGGT	1 cut(s)	718
SfaNI	GCATC	2 cut(s)	436, 559
SfcI	CTRYAG	1 cut(s)	690
SinI	GGWCC	3 cut(s)	165, 193, 618
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	3 cut(s)	476, 607, 638
StyD4I	CCNGG	1 cut(s)	718
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	4 cut(s)	15, 221, 251, 614
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	2 cut(s)	10, 287
TaqII	GACCGA	1 cut(s)	210
TasI	AATT	3 cut(s)	476, 607, 638
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	4 cut(s)	39, 320, 329, 358
TfiI	GAWTC	3 cut(s)	7, 395, 673
Tru1I	TTAA	2 cut(s)	588, 641
Tru9I	TTAA	2 cut(s)	588, 641
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	2 cut(s)	254, 694
TseI	GCWGC	1 cut(s)	749
Tsp45I	GTSAC	2 cut(s)	254, 694
TspDTI	ATGAA	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	388
TspRI	CASTG	1 cut(s)	469
VpaK11BI	GGWCC	3 cut(s)	165, 193, 618
XapI	RAATTY	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.