Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006560

Physical Location & Seq

Genomic Coordinates Reverse (-)

5394869 .. 5397673

Gene Structure 2805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG064300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGAATCGACGGTGCCTCCAACTCCTGACCCGCCGCGTCTCCGCCCTATTCTCAGCCAACCCACCATTCCACACCCTCTCAACCCCACCTCCTCCCCTCTCTACCCATCAACCCCTCATCTCCAACTCCCCAGTCGTTTTCACCCCCCATTGGTCCGCCCACACCCGCCATTTCTCGTCGGACCGAAACGATGACGTAAATGAGGACAGTCAAGACGACGACGACGATGATGAAATTGGGTATAGTAGTGACGACGGGAGTTTATCGAAGAATGGTGGGTCGAAAAGAGAGTACACGGCGGAGGAGATGGAGGCGGAGGCGGCGGGTATTGGGTACAAAGTGGTTGGGCCGCTTGAGAAGACTGATGATGGGGTTTTCAAGCCCTATGAACCCGTTTTCGCTGTCATTCAGATTGGTTCGCATCAGTTCAAAGTTAGTAATGGGGACTCCATTTTCACTGAAAGATTGAAATTTTGCGAGGTCAATGATAAGGTATGTACATTTTTAGGGTTGTGTGTTTTAACTGCTACGAGATCATTGATTGGTATATGGGTAAATTTTGGAAAATTTACCGAAAGAAATGAATGTTCAGTGGATGAGGTTTGCAGAAATCGAATTAGAATATGCATTTTGAGGTCTTGTAGCTTACAATGCATCTGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009566 GO:0009567 GO:0009987 GO:0010197 GO:0016043 GO:0019953 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0051704 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

222

Amino Acids

24.76

Weight (kDa)

5.25

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30930
fragaria_vesca	FvH4_3g09190
malus_domestica	MD05G1312600.v1.1 MD10G1294400.v1.1
prunus_persica	Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1
pyrus_communis	pycom05g29050 pycom10g24610
rosa_chinensis	RchiOBHm_Chr5g0008411
rosa_laevigata	RLG00000031342 RLG00000031387 RLG00000031569 RLG00000035355
rosa_multiflora	Rmu_sc0004326.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068080
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064300 Rh5BG061500 Rh5CG071400 Rh5CG071700 Rh5DG060400 Rh5DG064100
rosa_wichuraiana	Rw5G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	15
AccII	CGCG	1 cut(s)	39
AcsI	RAATTY	3 cut(s)	473, 559, 569
AfaI	GTAC	3 cut(s)	296, 338, 502
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	3 cut(s)	382, 433, 472
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	1 cut(s)	648
AluI	AGCT	1 cut(s)	648
Alw26I	GTCTC	1 cut(s)	46
AoxI	GGCC	1 cut(s)	350
ApoI	RAATTY	3 cut(s)	473, 559, 569
AspS9I	GGNCC	3 cut(s)	156, 184, 350
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	2 cut(s)	156, 184
BanI	GGYRCC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	368
BccI	CCATC	3 cut(s)	117, 304, 365
BceAI	ACGGC	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	46
BisI	GCNGC	3 cut(s)	37, 324, 353
BlsI	GCNGC	3 cut(s)	38, 325, 354
Bme18I	GGWCC	2 cut(s)	156, 184
BmgT120I	GGNCC	3 cut(s)	156, 184, 350
BmiI	GGNNCC	1 cut(s)	17
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	433
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	377
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 76, 106
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	604
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	2 cut(s)	84, 320
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	352
BshNI	GGYRCC	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	352
Bsp1407I	TGTACA	1 cut(s)	500
Bsp143I	GATC	1 cut(s)	536
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	134
BssMI	GATC	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	15, 212
BstAUI	TGTACA	1 cut(s)	500
BstDEI	CTNAG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	604
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	539
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	536
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 654
BstUI	CGCG	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	604
BtsIMutI	CAGTG	2 cut(s)	459, 600
Cfr13I	GGNCC	3 cut(s)	156, 184, 350
CpoI	CGGWCCG	1 cut(s)	184
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	3 cut(s)	295, 337, 501
CspI	CGGWCCG	1 cut(s)	184
CviJI	RGCY	4 cut(s)	59, 352, 385, 648
CviKI_1	RGCY	4 cut(s)	59, 352, 385, 648
CviQI	GTAC	3 cut(s)	295, 337, 501
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	1 cut(s)	538
DpnII	GATC	1 cut(s)	536
EciI	GGCGGA	4 cut(s)	34, 148, 317, 332
Eco47I	GGWCC	2 cut(s)	156, 184
EcoT22I	ATGCAT	2 cut(s)	632, 659
Esp3I	CGTCTC	1 cut(s)	46
FaiI	YATR	6 cut(s)	246, 390, 499, 551, 553, 628
FaqI	GGGAC	1 cut(s)	461
FauI	CCCGC	3 cut(s)	41, 176, 319
Fnu4HI	GCNGC	3 cut(s)	37, 324, 353
FokI	GGATG	1 cut(s)	611
Fsp4HI	GCNGC	3 cut(s)	37, 324, 353
GluI	GCNGC	3 cut(s)	37, 324, 353
HaeIII	GGCC	1 cut(s)	352
HgaI	GACGC	1 cut(s)	28
HinfI	GANTC	2 cut(s)	7, 449
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	2 cut(s)	184, 414
Hpy188III	TCNNGA	2 cut(s)	28, 215
Hpy8I	GTNNAC	1 cut(s)	297
Hpy99I	CGWCG	6 cut(s)	15, 184, 224, 227, 230, 260
HpyCH4III	ACNGT	2 cut(s)	15, 212
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	3 cut(s)	609, 630, 657
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 654
HpyF3I	CTNAG	1 cut(s)	55
HpySE526I	ACGT	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	536
LpnPI	CCDG	2 cut(s)	41, 147
LweI	GCATC	1 cut(s)	433
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	538
MboI	GATC	1 cut(s)	536
MboII	GAAGA	2 cut(s)	283, 373
MluCI	AATT	5 cut(s)	237, 473, 559, 569, 618
MlyI	GAGTC	1 cut(s)	443
MmeI	TCCRAC	3 cut(s)	46, 150, 162
Mph1103I	ATGCAT	2 cut(s)	632, 659
MseI	TTAA	1 cut(s)	524
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	323, 654
NdeII	GATC	1 cut(s)	536
NlaIV	GGNNCC	1 cut(s)	17
NmuCI	GTSAC	1 cut(s)	251
NsiI	ATGCAT	2 cut(s)	632, 659
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	38, 325, 354
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	3 cut(s)	156, 184, 350
RsaI	GTAC	3 cut(s)	296, 338, 502
RsaNI	GTAC	3 cut(s)	295, 337, 501
Rsr2I	CGGWCCG	1 cut(s)	184
RsrII	CGGWCCG	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	3 cut(s)	37, 324, 353
Sau3AI	GATC	1 cut(s)	536
Sau96I	GGNCC	3 cut(s)	156, 184, 350
SchI	GAGTC	1 cut(s)	443
SetI	ASST	7 cut(s)	94, 201, 486, 498, 606, 641, 650
SfaNI	GCATC	1 cut(s)	433
SinI	GGWCC	2 cut(s)	156, 184
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	5 cut(s)	237, 473, 559, 569, 618
TaaI	ACNGT	2 cut(s)	15, 212
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	4 cut(s)	10, 269, 284, 616
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	237, 473, 559, 569, 618
TatI	WGTACW	2 cut(s)	294, 500
TauI	GCSGC	3 cut(s)	39, 326, 355
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	2 cut(s)	466, 600
TseFI	GTSAC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	3 cut(s)	249, 405, 600
TspRI	CASTG	2 cut(s)	466, 600
VpaK11BI	GGWCC	2 cut(s)	156, 184
XapI	RAATTY	3 cut(s)	473, 559, 569
Zsp2I	ATGCAT	2 cut(s)	632, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.