Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006560

Physical Location & Seq

Genomic Coordinates Forward (+)

29592564 .. 29594842

Gene Structure 2279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29050.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCGACCCGACGGCGCCTCCAAGCTCTGACCCGCCACGCCTCCGCCCTCTTCTCCAAAAGCCCTTCATTCCACTCCCTCCCACCTCCCCTCCCCGTCTACCAACCCCTCAAAACCCTCACCTCCAATTTCTCCCTCATTTCCTCCAGCCCCGATCCCACTCGCTCACTTACCCGCCATTTCTCGTCGAAACCGCGAATCGGCGACGTAAATGAAGACAATGAGCACAGTGAAGAGGAGGAAGACGACGACGACGACGATGACGATGACGACGATGAAGAAGTTGGGGACAGTGAGGACGAGAGTGCTTACCGATGCAGCGGTTCGAAAAGAGAGTATACTCCAGAGGAGAAAGAGGCGGAGGCCGCCGGCATTGGGTACCAAGTGATTGGGCCGCTTCAGAGGTCTGATCGGGTTTTCAAGCCATATGAGCCGGTTTTCGCGGTGGTTCAGGTTGGTTCACATCAGTTCAAGGTTAGCAACGGGGACTGCATTTTCACAGAAAAGTTGAAATTCTGCGAAGTGAATGATAAGTTAGTATTGAACAAGGTTCTCATGCTGGGCTCAAGTAGTCAGACAATAATTGGTAGGCCCATATTACCAGATGCAGCAGTTCATGCGGTTGTTGAGGAGCACGCGTTAGATGCAAAGGTAATTATTTTTAAGAAAAAGAGGAGGAAGAATTACCGTCGAACCAAAGGACATCGCCAGGAATTGACTAAGTTGAGGATAGTTGATGTTCAAGGAATTGAGAAACCAGAGCCTGTAGTCACTGAAAAGCCTCCAAAGGCTCCAAAGGCACCCGGTAAGAAAACGGAAAAGGTTGCAGTTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009566 GO:0009567 GO:0009987 GO:0010197 GO:0016043 GO:0019953 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0051704 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

280

Amino Acids

31.19

Weight (kDa)

6.11

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30930
fragaria_vesca	FvH4_3g09190
malus_domestica	MD05G1312600.v1.1 MD10G1294400.v1.1
prunus_persica	Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1
pyrus_communis	pycom05g29050 pycom10g24610
rosa_chinensis	RchiOBHm_Chr5g0008411
rosa_laevigata	RLG00000031342 RLG00000031387 RLG00000031569 RLG00000035355
rosa_multiflora	Rmu_sc0004326.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068080
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064300 Rh5BG061500 Rh5CG071400 Rh5CG071700 Rh5DG060400 Rh5DG064100
rosa_wichuraiana	Rw5G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	378
AccB1I	GGYRCC	3 cut(s)	15, 378, 799
AccI	GTMKAC	2 cut(s)	99, 338
AccII	CGCG	3 cut(s)	196, 443, 638
AclWI	GGATC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	512
AcuI	CTGAAG	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	16
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	2 cut(s)	200, 375
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	5 cut(s)	421, 472, 511, 544, 743
AjnI	CCWGG	1 cut(s)	708
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw21I	GWGCWC	2 cut(s)	228, 636
AlwI	GGATC	1 cut(s)	149
AlwNI	CAGNNNCTG	2 cut(s)	764, 833
AoxI	GGCC	3 cut(s)	363, 392, 590
ApeKI	GCWGC	3 cut(s)	318, 608, 833
ApoI	RAATTY	1 cut(s)	512
Asp718I	GGTACC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	392, 591
AsuC2I	CCSGG	1 cut(s)	804
AsuHPI	GGTGA	1 cut(s)	112
AsuII	TTCGAA	1 cut(s)	326
BanI	GGYRCC	3 cut(s)	15, 378, 799
BanII	GRGCYC	1 cut(s)	566
BbsI	GAAGAC	2 cut(s)	222, 249
Bbv12I	GWGCWC	2 cut(s)	228, 636
BbvI	GCAGC	3 cut(s)	330, 620, 820
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	710
BcnI	CCSGG	1 cut(s)	804
BfmI	CTRYAG	1 cut(s)	765
BfoI	RGCGCY	1 cut(s)	19
BisI	GCNGC	5 cut(s)	319, 366, 395, 609, 834
BlsI	GCNGC	5 cut(s)	320, 367, 396, 610, 835
Bme1390I	CCNGG	2 cut(s)	710, 804
BmgT120I	GGNCC	2 cut(s)	392, 591
BmiI	GGNNCC	4 cut(s)	17, 380, 792, 801
BmrFI	CCNGG	2 cut(s)	710, 804
BmsI	GCATC	3 cut(s)	305, 595, 634
BpiI	GAAGAC	2 cut(s)	222, 249
BpmI	CTGGAG	2 cut(s)	130, 327
Bpu14I	TTCGAA	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	550
BpuMI	CCSGG	1 cut(s)	804
BsaHI	GRCGYC	1 cut(s)	16
BsaXI	ACNNNNNCTCC	5 cut(s)	33, 75, 105, 623, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 375
Bse118I	RCCGGY	2 cut(s)	368, 433
BseBI	CCWGG	1 cut(s)	710
BseLI	CCNNNNNNNGG	2 cut(s)	200, 375
BseRI	GAGGAG	4 cut(s)	251, 362, 644, 688
BseXI	GCAGC	3 cut(s)	330, 620, 820
BseYI	CCCAGC	1 cut(s)	559
Bsh1236I	CGCG	3 cut(s)	196, 443, 638
BshFI	GGCC	3 cut(s)	365, 394, 592
BshNI	GGYRCC	3 cut(s)	15, 378, 799
BsiHKAI	GWGCWC	2 cut(s)	228, 636
BsiSI	CCGG	3 cut(s)	369, 434, 804
BslFI	GGGAC	2 cut(s)	302, 500
BslI	CCNNNNNNNGG	2 cut(s)	200, 375
BsmFI	GGGAC	2 cut(s)	302, 500
BsnI	GGCC	3 cut(s)	365, 394, 592
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1286I	GDGCHC	3 cut(s)	228, 566, 636
Bsp143I	GATC	2 cut(s)	154, 409
BspANI	GGCC	3 cut(s)	365, 394, 592
BspFNI	CGCG	3 cut(s)	196, 443, 638
BspLI	GGNNCC	4 cut(s)	17, 380, 792, 801
BspPI	GGATC	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	326
BspT107I	GGYRCC	3 cut(s)	15, 378, 799
BsrFI	RCCGGY	2 cut(s)	368, 433
BssAI	RCCGGY	2 cut(s)	368, 433
BssMI	GATC	2 cut(s)	154, 409
BssNAI	GTATAC	1 cut(s)	339
BssNI	GRCGYC	1 cut(s)	16
Bst1107I	GTATAC	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	3 cut(s)	230, 293, 689
Bst6I	CTCTTC	2 cut(s)	56, 228
BstACI	GRCGYC	1 cut(s)	16
BstAPI	GCANNNNNTGC	2 cut(s)	617, 833
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	370, 636
BstDEI	CTNAG	2 cut(s)	720, 837
BstFNI	CGCG	3 cut(s)	196, 443, 638
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	2 cut(s)	157, 412
BstMBI	GATC	2 cut(s)	154, 409
BstMWI	GCNNNNNNNGC	6 cut(s)	365, 430, 617, 644, 797, 833
BstNI	CCWGG	1 cut(s)	710
BstSCI	CCNGG	2 cut(s)	708, 802
BstSFI	CTRYAG	1 cut(s)	765
BstUI	CGCG	3 cut(s)	196, 443, 638
BstV1I	GCAGC	3 cut(s)	330, 620, 820
BstV2I	GAAGAC	2 cut(s)	222, 249
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstZ17I	GTATAC	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	365, 394, 592
BtgZI	GCGATG	1 cut(s)	689
BtsIMutI	CAGTG	3 cut(s)	235, 298, 771
Cac8I	GCNNGC	2 cut(s)	370, 636
CaiI	CAGNNNCTG	2 cut(s)	764, 833
CfoI	GCGC	1 cut(s)	18
Cfr10I	RCCGGY	2 cut(s)	368, 433
Cfr13I	GGNCC	2 cut(s)	392, 591
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	2 cut(s)	556, 617
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	2 cut(s)	720, 837
DinI	GGCGCC	1 cut(s)	17
DpnI	GATC	2 cut(s)	156, 411
DpnII	GATC	2 cut(s)	154, 409
Eam1104I	CTCTTC	2 cut(s)	56, 228
EarI	CTCTTC	2 cut(s)	56, 228
EciI	GGCGGA	2 cut(s)	34, 374
Eco24I	GRGCYC	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	708
EcoT38I	GRGCYC	1 cut(s)	566
EgeI	GGCGCC	1 cut(s)	17
EheI	GGCGCC	1 cut(s)	17
FaeI	CATG	2 cut(s)	559, 620
FaiI	YATR	6 cut(s)	339, 427, 429, 557, 596, 618
FaqI	GGGAC	2 cut(s)	302, 500
FatI	CATG	2 cut(s)	555, 616
FauI	CCCGC	2 cut(s)	41, 182
FauNDI	CATATG	1 cut(s)	427
FblI	GTMKAC	2 cut(s)	99, 338
Fnu4HI	GCNGC	5 cut(s)	319, 366, 395, 609, 834
FriOI	GRGCYC	1 cut(s)	566
Fsp4HI	GCNGC	5 cut(s)	319, 366, 395, 609, 834
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	5 cut(s)	319, 366, 395, 609, 834
GsaI	CCCAGC	1 cut(s)	563
GsuI	CTGGAG	2 cut(s)	130, 327
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	3 cut(s)	365, 394, 592
HapII	CCGG	3 cut(s)	369, 434, 804
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	16
Hin1II	CATG	2 cut(s)	559, 620
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HinfI	GANTC	1 cut(s)	198
HpaII	CCGG	3 cut(s)	369, 434, 804
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	3 cut(s)	100, 339, 461
Hpy188I	TCNGA	4 cut(s)	30, 402, 409, 576
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	3 cut(s)	100, 339, 461
Hpy99I	CGWCG	9 cut(s)	15, 190, 209, 251, 254, 257, 260, 275, 693
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	3 cut(s)	230, 293, 689
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	5 cut(s)	318, 492, 608, 647, 827
HpyF10VI	GCNNNNNNNGC	6 cut(s)	365, 430, 617, 644, 797, 833
HpyF3I	CTNAG	2 cut(s)	720, 837
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	16
Hsp92II	CATG	2 cut(s)	559, 620
HspAI	GCGC	1 cut(s)	16
KasI	GGCGCC	1 cut(s)	15
KpnI	GGTACC	1 cut(s)	382
KroI	GCCGGC	1 cut(s)	368
KroNI	GCCGGC	1 cut(s)	370
Kzo9I	GATC	2 cut(s)	154, 409
LmnI	GCTCC	2 cut(s)	631, 796
Lsp1109I	GCAGC	3 cut(s)	330, 620, 820
LweI	GCATC	3 cut(s)	305, 595, 634
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	769
MalI	GATC	2 cut(s)	156, 411
MboI	GATC	2 cut(s)	154, 409
MboII	GAAGA	6 cut(s)	43, 227, 245, 254, 290, 691
MhlI	GDGCHC	3 cut(s)	228, 566, 636
MluCI	AATT	7 cut(s)	127, 512, 582, 654, 682, 713, 747
MluI	ACGCGT	1 cut(s)	636
Mly113I	GGCGCC	1 cut(s)	16
MroNI	GCCGGC	1 cut(s)	368
MseI	TTAA	1 cut(s)	663
MspA1I	CMGCKG	1 cut(s)	321
MspI	CCGG	3 cut(s)	369, 434, 804
MspR9I	CCNGG	2 cut(s)	710, 804
MvaI	CCWGG	1 cut(s)	710
MvnI	CGCG	3 cut(s)	196, 443, 638
MwoI	GCNNNNNNNGC	6 cut(s)	365, 430, 617, 644, 797, 833
NaeI	GCCGGC	1 cut(s)	370
NarI	GGCGCC	1 cut(s)	16
NciI	CCSGG	1 cut(s)	804
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	2 cut(s)	154, 409
NgoMIV	GCCGGC	1 cut(s)	368
NlaIII	CATG	2 cut(s)	559, 620
NlaIV	GGNNCC	4 cut(s)	17, 380, 792, 801
NmuCI	GTSAC	1 cut(s)	769
NspV	TTCGAA	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	4 cut(s)	252, 255, 261, 270
PdiI	GCCGGC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	198
PkrI	GCNGC	5 cut(s)	320, 367, 396, 610, 835
PluTI	GGCGCC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	708
PspFI	CCCAGC	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	4 cut(s)	17, 380, 792, 801
PspPI	GGNCC	2 cut(s)	392, 591
PstNI	CAGNNNCTG	2 cut(s)	764, 833
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	5 cut(s)	319, 366, 395, 609, 834
Sau3AI	GATC	2 cut(s)	154, 409
Sau96I	GGNCC	2 cut(s)	392, 591
ScrFI	CCNGG	2 cut(s)	710, 804
SduI	GDGCHC	3 cut(s)	228, 566, 636
SfaNI	GCATC	3 cut(s)	305, 595, 634
SfcI	CTRYAG	1 cut(s)	765
SfoI	GGCGCC	1 cut(s)	17
SfuI	TTCGAA	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
Sse9I	AATT	7 cut(s)	127, 512, 582, 654, 682, 713, 747
SspDI	GGCGCC	1 cut(s)	15
StyD4I	CCNGG	2 cut(s)	708, 802
TaaI	ACNGT	3 cut(s)	230, 293, 689
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	3 cut(s)	188, 326, 691
TasI	AATT	7 cut(s)	127, 512, 582, 654, 682, 713, 747
TauI	GCSGC	2 cut(s)	368, 397
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	3 cut(s)	235, 298, 778
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	3 cut(s)	318, 608, 833
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	4 cut(s)	57, 228, 291, 605
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	3 cut(s)	235, 298, 778
XapI	RAATTY	1 cut(s)	512
XmiI	GTMKAC	2 cut(s)	99, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.