Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006560

Physical Location & Seq

Genomic Coordinates Reverse (-)

6285184 .. 6287719

Gene Structure 2536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031569

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGAATCGACGGTGCCTCCAACTCCTGACCCGCCGCGTCTCCGCCCTATTCTCAGCCAACCCACCATTCCACACCCTCTCAACCCCACCTCCTCCCCTCTCTACTCATCAACCCCTCATCTCCAACTCCCCACTTGTTTTCACCCCCCATTGGTCCGCCCACACCCGCCATTTCTCGTCGGACCGAAACGACGACGTAAATGAGGACAGTCAAGACGACGACGACGATGATGAAATTGGGTACAGTAGTGACGACGGGAGTTTATCGAAGGGTGGTGGGTCGAAAAGGGAGTACACGGAGGAGGAGATGGCGGCGGAGGCGGCGGGTATTGGGTACAAGGTGGTTGGGCCGCTTGAGAAGACTGATGATGGGGTTTTCAAGTCCTATGAGCCCGTTTTCGCTGTCATTCAGATTGGTTCGCATCAGTTCAAAGTTAGTAATGGGGACTCCATTTTCACTGAAAGATTGAAATTTTGCGAGGTCAATGATAAGTTGATATTGAATAAGGTTCTCTTGGTGGGCTCAAGTAGTCAGACAATGATCGGCAGGCCAATAGTTCCTGATGCAGCAGTTCATGCAGTTGTTGAAGAGCATGCATTAGATGCGAAGGTACTTATTTTTAAGAAAAAGAGGAGGAAGAATTACCGTCGGACCAAAGGTCATCGCCAAGAATTAACCAAGTTGAGGATTATTGATATTCAAGGGATTCAGAAACCAGAACCTGTAGTCACCGAAAAACCTTCAAAGGCAGCTGGTAAGAAGCCAGAAAAGGTTGCAGTTGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009566 GO:0009567 GO:0009987 GO:0010197 GO:0016043 GO:0019953 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0051704 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

264

Amino Acids

29.1

Weight (kDa)

7.79

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21p	PF00829	134 - 234	5.6e-32	Ribosomal prokaryotic L21 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30930
fragaria_vesca	FvH4_3g09190
malus_domestica	MD05G1312600.v1.1 MD10G1294400.v1.1
prunus_persica	Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1
pyrus_communis	pycom05g29050 pycom10g24610
rosa_chinensis	RchiOBHm_Chr5g0008411
rosa_laevigata	RLG00000031342 RLG00000031387 RLG00000031569 RLG00000035355
rosa_multiflora	Rmu_sc0004326.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068080
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064300 Rh5BG061500 Rh5CG071400 Rh5CG071700 Rh5DG060400 Rh5DG064100
rosa_wichuraiana	Rw5G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	15
AccII	CGCG	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	473
AfaI	GTAC	4 cut(s)	245, 296, 338, 615
AfiI	CCNNNNNNNGG	2 cut(s)	153, 687
AgsI	TTSAA	7 cut(s)	382, 433, 472, 505, 590, 704, 747
AhdI	GACNNNNNGTC	1 cut(s)	660
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	1 cut(s)	755
AluI	AGCT	1 cut(s)	755
Alw26I	GTCTC	1 cut(s)	46
AlwNI	CAGNNNCTG	2 cut(s)	725, 785
AoxI	GGCC	2 cut(s)	350, 551
ApeKI	GCWGC	3 cut(s)	569, 752, 785
ApoI	RAATTY	1 cut(s)	473
AspS9I	GGNCC	4 cut(s)	156, 184, 350, 654
AsuHPI	GGTGA	2 cut(s)	136, 724
AvaII	GGWCC	3 cut(s)	156, 184, 654
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BanI	GGYRCC	1 cut(s)	15
BanII	GRGCYC	2 cut(s)	396, 527
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	3 cut(s)	581, 764, 772
BccI	CCATC	2 cut(s)	304, 365
BcoDI	GTCTC	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	726
BisI	GCNGC	7 cut(s)	37, 315, 324, 353, 570, 753, 786
BlsI	GCNGC	7 cut(s)	38, 316, 325, 354, 571, 754, 787
Bme18I	GGWCC	3 cut(s)	156, 184, 654
BmeRI	GACNNNNNGTC	1 cut(s)	660
BmgT120I	GGNCC	4 cut(s)	156, 184, 350, 654
BmiI	GGNNCC	1 cut(s)	17
BmsI	GCATC	3 cut(s)	433, 556, 595
BpiI	GAAGAC	1 cut(s)	368
BpuEI	CTTGAG	2 cut(s)	377, 511
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 76, 106
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 687
BseLI	CCNNNNNNNGG	2 cut(s)	153, 687
BseMII	CTCAG	1 cut(s)	69
BseRI	GAGGAG	4 cut(s)	84, 317, 320, 649
BseXI	GCAGC	3 cut(s)	581, 764, 772
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	352, 553
BshNI	GGYRCC	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	153, 687
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	352, 553
Bsp1286I	GDGCHC	2 cut(s)	396, 527
Bsp143I	GATC	1 cut(s)	543
BspANI	GGCC	2 cut(s)	352, 553
BspCNI	CTCAG	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	585
BspT107I	GGYRCC	1 cut(s)	15
BssMI	GATC	1 cut(s)	543
Bst4CI	ACNGT	4 cut(s)	15, 212, 248, 650
Bst6I	CTCTTC	1 cut(s)	585
BstAPI	GCANNNNNTGC	3 cut(s)	578, 605, 785
BstC8I	GCNNGC	2 cut(s)	551, 597
BstDEI	CTNAG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	546
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	543
BstMWI	GCNNNNNNNGC	5 cut(s)	320, 323, 578, 605, 785
BstNSI	RCATGY	1 cut(s)	599
BstSFI	CTRYAG	1 cut(s)	726
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	3 cut(s)	581, 764, 772
BstV2I	GAAGAC	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	352, 553
BtgZI	GCGATG	1 cut(s)	650
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	551, 597
CaiI	CAGNNNCTG	2 cut(s)	725, 785
Cfr13I	GGNCC	4 cut(s)	156, 184, 350, 654
CpoI	CGGWCCG	1 cut(s)	184
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	4 cut(s)	244, 295, 337, 614
CspI	CGGWCCG	1 cut(s)	184
CviAII	CATG	2 cut(s)	578, 596
CviJI	RGCY	7 cut(s)	59, 352, 394, 525, 553, 755, 766
CviKI_1	RGCY	7 cut(s)	59, 352, 394, 525, 553, 755, 766
CviQI	GTAC	4 cut(s)	244, 295, 337, 614
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	1 cut(s)	545
DpnII	GATC	1 cut(s)	543
DriI	GACNNNNNGTC	1 cut(s)	660
Eam1104I	CTCTTC	1 cut(s)	585
Eam1105I	GACNNNNNGTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	585
EciI	GGCGGA	3 cut(s)	34, 148, 332
Eco24I	GRGCYC	2 cut(s)	396, 527
Eco47I	GGWCC	3 cut(s)	156, 184, 654
EcoT22I	ATGCAT	1 cut(s)	601
EcoT38I	GRGCYC	2 cut(s)	396, 527
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	2 cut(s)	581, 599
FaiI	YATR	4 cut(s)	390, 579, 597, 790
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	2 cut(s)	577, 595
FauI	CCCGC	3 cut(s)	41, 176, 319
Fnu4HI	GCNGC	7 cut(s)	37, 315, 324, 353, 570, 753, 786
FriOI	GRGCYC	2 cut(s)	396, 527
Fsp4HI	GCNGC	7 cut(s)	37, 315, 324, 353, 570, 753, 786
GluI	GCNGC	7 cut(s)	37, 315, 324, 353, 570, 753, 786
HaeIII	GGCC	2 cut(s)	352, 553
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	581, 599
HinfI	GANTC	3 cut(s)	7, 449, 709
HphI	GGTGA	2 cut(s)	136, 724
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	5 cut(s)	184, 414, 537, 654, 714
Hpy188III	TCNNGA	3 cut(s)	28, 215, 563
Hpy8I	GTNNAC	1 cut(s)	297
Hpy99I	CGWCG	9 cut(s)	15, 184, 197, 200, 224, 227, 230, 260, 654
HpyAV	CCTTC	3 cut(s)	265, 604, 753
HpyCH4III	ACNGT	4 cut(s)	15, 212, 248, 650
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	5 cut(s)	569, 581, 599, 779, 788
HpyF10VI	GCNNNNNNNGC	5 cut(s)	320, 323, 578, 605, 785
HpyF3I	CTNAG	1 cut(s)	55
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	581, 599
Kzo9I	GATC	1 cut(s)	543
LguI	GCTCTTC	1 cut(s)	585
LpnPI	CCDG	7 cut(s)	41, 535, 576, 732, 738, 741, 780
Lsp1109I	GCAGC	3 cut(s)	581, 764, 772
LweI	GCATC	3 cut(s)	433, 556, 595
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	251, 730
MalI	GATC	1 cut(s)	545
MboI	GATC	1 cut(s)	543
MboII	GAAGA	3 cut(s)	373, 602, 652
MhlI	GDGCHC	2 cut(s)	396, 527
MluCI	AATT	4 cut(s)	237, 473, 643, 674
MlyI	GAGTC	1 cut(s)	443
MmeI	TCCRAC	4 cut(s)	46, 150, 162, 632
Mph1103I	ATGCAT	1 cut(s)	601
MseI	TTAA	2 cut(s)	624, 677
MspA1I	CMGCKG	1 cut(s)	755
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	5 cut(s)	320, 323, 578, 605, 785
NdeII	GATC	1 cut(s)	543
NlaIII	CATG	2 cut(s)	581, 599
NlaIV	GGNNCC	1 cut(s)	17
NmuCI	GTSAC	2 cut(s)	251, 730
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	1 cut(s)	599
PaeI	GCATGC	1 cut(s)	599
PciSI	GCTCTTC	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	7, 709
PkrI	GCNGC	7 cut(s)	38, 316, 325, 354, 571, 754, 787
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	4 cut(s)	156, 184, 350, 654
PstNI	CAGNNNCTG	2 cut(s)	725, 785
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	4 cut(s)	245, 296, 338, 615
RsaNI	GTAC	4 cut(s)	244, 295, 337, 614
Rsr2I	CGGWCCG	1 cut(s)	184
RsrII	CGGWCCG	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	585
SaqAI	TTAA	2 cut(s)	624, 677
SatI	GCNGC	7 cut(s)	37, 315, 324, 353, 570, 753, 786
Sau3AI	GATC	1 cut(s)	543
Sau96I	GGNCC	4 cut(s)	156, 184, 350, 654
SchI	GAGTC	1 cut(s)	443
SduI	GDGCHC	2 cut(s)	396, 527
SfaNI	GCATC	3 cut(s)	433, 556, 595
SfcI	CTRYAG	1 cut(s)	726
SinI	GGWCC	3 cut(s)	156, 184, 654
SmlI	CTYRAG	2 cut(s)	356, 526
SmoI	CTYRAG	2 cut(s)	356, 526
SphI	GCATGC	1 cut(s)	599
Sse9I	AATT	4 cut(s)	237, 473, 643, 674
TaaI	ACNGT	4 cut(s)	15, 212, 248, 650
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	3 cut(s)	10, 269, 284
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	4 cut(s)	237, 473, 643, 674
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	4 cut(s)	39, 317, 326, 355
TfiI	GAWTC	2 cut(s)	7, 709
Tru1I	TTAA	2 cut(s)	624, 677
Tru9I	TTAA	2 cut(s)	624, 677
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	2 cut(s)	251, 730
TseI	GCWGC	3 cut(s)	569, 752, 785
Tsp45I	GTSAC	2 cut(s)	251, 730
TspDTI	ATGAA	2 cut(s)	249, 566
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	3 cut(s)	156, 184, 654
XapI	RAATTY	1 cut(s)	473
XceI	RCATGY	1 cut(s)	599
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.