Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006171

Physical Location & Seq

Genomic Coordinates Forward (+)

59322058 .. 59323943

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0435600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGGGAACTGTCAGGCCATCGATGCTGCTGCTCTGGTGATACAGCACCCGAGTGGGAAGATAGAGAGGCTGTACTGGCCTATAAGCGCCAGCGAGGTCATGAGGTTGAACCCTGGTCATTACGTTTCTCTGATTATCCCATTGCCGGCTTCGGATTCGGGTTCTGATCATCATCACCAGGAGGAGGAGATTCGGGAGCAGAAGAGTAGTGGTGGTGGTGCGGTGCGTTTCACAAGGGTGAAGCTTCTTCGACCTAATGAGACTCTTGCTCTTGGTCATGCCTATCGTCTGGTCACTACTCAAGAGGTTATGAAGGTGTTGAGGGCAAAGAAGTATGCGAAGACGAAGAAGCAGCAGGTGGAATCACTAATTGAGAAATCATCACAGACGGCAGTGCCCGAGAAACAGAGTTCGAGTTGTGAGGCAGAGGACAAAGAAAATATCAACCATGCTACAAATCATGAAAGGCGCCGACCCAGGACGGCATCAGGGAATGCTGCTGGTGCTGCAATGAGGTCGAAATCTTGGCGGCCCTCATTGCAGAGCATTTCTGAAGCTGCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006464 GO:0006807 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010966 GO:0012505 GO:0015698 GO:0016036 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0032879 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0042592 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903795 GO:1903959 GO:2000185

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

188

Amino Acids

20.73

Weight (kDa)

9.54

Isoelectric Point (pI)

61.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PADRE	PF14009	1 - 185	3.8e-27	PADRE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33770
fragaria_vesca	FvH4_3g09200 FvH4_3g29950
malus_domestica	MD05G1312700.v1.1 MD10G1294500.v1.1
prunus_persica	Prupe.4G047400_v2.0.a1 Prupe.4G047400_v2.0.a1
pyrus_communis	pycom05g29070 pycom05g29080 pycom10g24620 pycom10g24630 pycom10g24640
rosa_chinensis	RchiOBHm_Chr5g0008401
rosa_laevigata	RLG00000031568
rosa_multiflora	Rmu_co8007308.1_g000001 Rmu_co8292313.1_g000001 Rmu_sc0004326.1_g000003 Rmu_sc0028200.1_g000001 Rmu_ssc0000388.1_g000061
rosa_roxburghii	Rroxscaffold_1G00068090
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064200 Rh5BG061400 Rh5CG071300 Rh5DG060200 Rh5DG060300
rosa_wichuraiana	Rw5G005660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	346
Acc36I	ACCTGC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	468
AciI	CCGC	2 cut(s)	221, 529
AcyI	GRCGYC	1 cut(s)	469
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	2 cut(s)	145, 184
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	3 cut(s)	112, 177, 476
AleI	CACNNNNGTG	2 cut(s)	51, 236
AluBI	AGCT	3 cut(s)	244, 557, 564
AluI	AGCT	3 cut(s)	244, 557, 564
Alw26I	GTCTC	1 cut(s)	254
Ama87I	CYCGRG	2 cut(s)	49, 398
AoxI	GGCC	3 cut(s)	15, 77, 530
ApeKI	GCWGC	6 cut(s)	26, 29, 352, 497, 506, 557
AspLEI	GCGC	2 cut(s)	89, 471
AspS9I	GGNCC	1 cut(s)	531
AsuHPI	GGTGA	3 cut(s)	49, 167, 250
AvaI	CYCGRG	2 cut(s)	49, 398
BaeGI	GKGCMC	1 cut(s)	399
BanI	GGYRCC	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	347
BbvI	GCAGC	6 cut(s)	13, 16, 364, 484, 493, 544
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	2 cut(s)	405, 498
BcgI	CGANNNNNNTGC	4 cut(s)	11, 45, 498, 532
BciT130I	CCWGG	3 cut(s)	114, 179, 478
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	254
BfoI	RGCGCY	2 cut(s)	90, 472
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	7 cut(s)	27, 30, 353, 498, 507, 530, 558
BlsI	GCNGC	7 cut(s)	28, 31, 354, 499, 508, 531, 559
Bme1390I	CCNGG	3 cut(s)	114, 179, 478
BmeT110I	CYCGRG	2 cut(s)	49, 398
BmgT120I	GGNCC	1 cut(s)	531
BmiI	GGNNCC	1 cut(s)	470
BmrFI	CCNGG	3 cut(s)	114, 179, 478
BmsI	GCATC	2 cut(s)	13, 494
BpiI	GAAGAC	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	285
Bsa29I	ATCGAT	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	469
BsaJI	CCNNGG	2 cut(s)	112, 476
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 184
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	80
Bse3DI	GCAATG	3 cut(s)	140, 516, 536
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	3 cut(s)	114, 179, 478
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	112, 476
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	145, 184
BseMI	GCAATG	3 cut(s)	140, 516, 536
BseNI	ACTGG	1 cut(s)	80
BseRI	GAGGAG	2 cut(s)	197, 200
BseSI	GKGCMC	1 cut(s)	399
BseXI	GCAGC	6 cut(s)	13, 16, 364, 484, 493, 544
BshFI	GGCC	3 cut(s)	17, 79, 532
BshNI	GGYRCC	1 cut(s)	468
BshVI	ATCGAT	1 cut(s)	21
BsiHKCI	CYCGRG	2 cut(s)	49, 398
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	145, 184
BsmAI	GTCTC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	3 cut(s)	17, 79, 532
BsoBI	CYCGRG	2 cut(s)	49, 398
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	2 cut(s)	221, 529
BspANI	GGCC	3 cut(s)	17, 79, 532
BspDI	ATCGAT	1 cut(s)	21
BspHI	TCATGA	2 cut(s)	99, 460
BspLI	GGNNCC	1 cut(s)	470
BspMI	ACCTGC	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	468
BsrDI	GCAATG	3 cut(s)	140, 516, 536
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	112, 476
BssMI	GATC	1 cut(s)	166
BssNI	GRCGYC	1 cut(s)	469
Bst2UI	CCWGG	3 cut(s)	114, 179, 478
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	197
BstACI	GRCGYC	1 cut(s)	469
BstC8I	GCNNGC	3 cut(s)	91, 147, 562
BstH2I	RGCGCY	2 cut(s)	90, 472
BstHHI	GCGC	2 cut(s)	89, 471
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 76, 503, 506, 538
BstNI	CCWGG	3 cut(s)	114, 179, 478
BstSCI	CCNGG	3 cut(s)	112, 177, 476
BstSLI	GKGCMC	1 cut(s)	399
BstV1I	GCAGC	6 cut(s)	13, 16, 364, 484, 493, 544
BstV2I	GAAGAC	1 cut(s)	347
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	17, 79, 532
BsuTUI	ATCGAT	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	399
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	3 cut(s)	91, 147, 562
CciI	TCATGA	2 cut(s)	99, 460
CfoI	GCGC	2 cut(s)	89, 471
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	531
ClaI	ATCGAT	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	4 cut(s)	100, 278, 449, 461
CviJI	RGCY	8 cut(s)	17, 70, 79, 149, 244, 532, 557, 564
CviKI_1	RGCY	8 cut(s)	17, 70, 79, 149, 244, 532, 557, 564
CviQI	GTAC	1 cut(s)	73
DinI	GGCGCC	1 cut(s)	470
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco88I	CYCGRG	2 cut(s)	49, 398
EcoRII	CCWGG	3 cut(s)	112, 177, 476
EgeI	GGCGCC	1 cut(s)	470
EheI	GGCGCC	1 cut(s)	470
FaeI	CATG	4 cut(s)	103, 281, 452, 464
FaiI	YATR	7 cut(s)	83, 101, 279, 311, 336, 450, 462
FatI	CATG	4 cut(s)	99, 277, 448, 460
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	7 cut(s)	27, 30, 353, 498, 507, 530, 558
Fsp4HI	GCNGC	7 cut(s)	27, 30, 353, 498, 507, 530, 558
GlaI	GCGC	2 cut(s)	88, 470
GluI	GCNGC	7 cut(s)	27, 30, 353, 498, 507, 530, 558
HaeII	RGCGCY	2 cut(s)	90, 472
HaeIII	GGCC	3 cut(s)	17, 79, 532
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	2 cut(s)	89, 471
Hin1I	GRCGYC	1 cut(s)	469
Hin1II	CATG	4 cut(s)	103, 281, 452, 464
Hin6I	GCGC	2 cut(s)	87, 469
HinP1I	GCGC	2 cut(s)	87, 469
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	4 cut(s)	155, 190, 262, 362
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	3 cut(s)	49, 167, 250
Hpy188I	TCNGA	4 cut(s)	132, 154, 166, 553
Hpy188III	TCNNGA	4 cut(s)	100, 194, 302, 461
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	3 cut(s)	509, 541, 560
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 76, 503, 506, 538
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	469
Hsp92II	CATG	4 cut(s)	103, 281, 452, 464
HspAI	GCGC	2 cut(s)	87, 469
KasI	GGCGCC	1 cut(s)	468
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	6 cut(s)	13, 16, 364, 484, 493, 544
LweI	GCATC	2 cut(s)	13, 494
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	5 cut(s)	70, 214, 239, 352, 358
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	1 cut(s)	369
Mly113I	GGCGCC	1 cut(s)	469
MlyI	GAGTC	1 cut(s)	256
MroNI	GCCGGC	1 cut(s)	145
MslI	CAYNNNNRTG	2 cut(s)	51, 236
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	3 cut(s)	114, 179, 478
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	3 cut(s)	114, 179, 478
MwoI	GCNNNNNNNGC	5 cut(s)	23, 76, 503, 506, 538
NaeI	GCCGGC	1 cut(s)	147
NarI	GGCGCC	1 cut(s)	469
NdeII	GATC	1 cut(s)	166
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	4 cut(s)	103, 281, 452, 464
NlaIV	GGNNCC	1 cut(s)	470
NmuCI	GTSAC	1 cut(s)	292
OliI	CACNNNNGTG	2 cut(s)	51, 236
PagI	TCATGA	2 cut(s)	99, 460
PaqCI	CACCTGC	1 cut(s)	346
PctI	GAATGC	1 cut(s)	499
PdiI	GCCGGC	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	155, 190, 362
PkrI	GCNGC	7 cut(s)	28, 31, 354, 499, 508, 531, 559
PleI	GAGTC	1 cut(s)	256
PluTI	GGCGCC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	256
Psp6I	CCWGG	3 cut(s)	112, 177, 476
PspGI	CCWGG	3 cut(s)	112, 177, 476
PspN4I	GGNNCC	1 cut(s)	470
PspPI	GGNCC	1 cut(s)	531
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	2 cut(s)	51, 236
SatI	GCNGC	7 cut(s)	27, 30, 353, 498, 507, 530, 558
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	531
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	3 cut(s)	114, 179, 478
SduI	GDGCHC	1 cut(s)	399
SfaNI	GCATC	2 cut(s)	13, 494
SfoI	GGCGCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	2 cut(s)	51, 236
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
Sse9I	AATT	1 cut(s)	369
SsiI	CCGC	2 cut(s)	221, 529
SspDI	GGCGCC	1 cut(s)	468
StyD4I	CCNGG	3 cut(s)	112, 177, 476
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	4 cut(s)	21, 250, 413, 518
TasI	AATT	1 cut(s)	369
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	1 cut(s)	532
TfiI	GAWTC	3 cut(s)	155, 190, 362
TscAI	CASTG	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	6 cut(s)	26, 29, 352, 497, 506, 557
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	2 cut(s)	326, 477
TspRI	CASTG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.