Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006171

Physical Location & Seq

Genomic Coordinates Forward (+)

89405044 .. 89411395

Gene Structure 6352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2775 bp

ATGGATATGGTTCTTAGTGACTCTGATTGGGACAGTTACAGTGAGACTGGTAGCAATGACGATCAAGAGGGAAACGAATATTTCTATGGTGGGCACGCCAGCAGCCTATTGTCTAGCCTTGAGGCTAGTATTGGGAAAATTGATGACTTTCTCTCATTCGAGAGGGGATTTATATATGGGGACATAGTAAGCTCTGTAAGAGATCCATCTGGACAGATGGGAAAAGTTGTTGGCATTAAGATGTCTGTTGATTTGGAGAGTGTGAATGGAAATATGATCAAAAATGTAAACTCGAAGAATCTGTCAAAGATCCGTCCCATTTCGGTGGGGGATTATGTTGTTTGTGGGCCTTGGCTTGGAAGGGTGGATAGAGTAGTTGACTGTGTAGCTGTTGTCTTTGACGATGGCACAGAGTGTGTGGTGACTGCTGTGGATCCAGAGAAGCTCGTACCCGTCTCCCCAAACATACTTGAAGACCCACAGTACCCATATTATCCAGGACAGAGAGTAAAGGTTAGGCTCTCAACTGTTTCCAAATCAACTAGATGGTTTTGTGGTAACTGGAGGGAAAATCAAGATGAAGGAACTGTTTGTTCTTTGGAAGGAGGTTTAATGTATGTTGATTGGCTTGCCTCTGTTCTCGTAGGTTGTGGTTCGAATTTTCCTGCTCCTCCACATCTGCTGGATTCAAAGAAATTGACTTTGGTATCATGTTTCTCTCATGCCAATTGGCAGCTTGGTGACTGGTGTATGCTTGCAATTGCTGAGTGTAAAGGTTTTTCGGAGCAGGCTTTTCATAGAACTTCTACTTGTGAGCTTACTAACAAGCAAAACAATTCAGAAAGAGGATTTAAGAGAAGAAATCCCAAGTCAAAAATTGAGGAAATCTTTGTAATCTCAAAGACAAAGACCAAAGTTGATGTTCTGTGGCAAGATGGTAGCCAGTCTTTGGAAGTGGATTCACAGACCTTAGTTCCGGTCAGTGTTGTAAATGATCATGAATTTTGGCCTGAACAGTTTATCCTTGAAAAGGGAACTTATGATGATCCAAACTTGTTTAGCAGCCAAAGGTGGGGTGTTGTGCGTGGTGTGGATGCAAAGGAACGAACAGTAAAGGTGCAATGGAAAACTATAACTGCACCCGAAACAAATAATTTAGAGGGAGAGCAGATGGAGGAAGTTGTAAGTGCTTATGAACTTGTTGAGCACCCGGATTACTCCTACTGTTTTGGAGATTATGTGTTCAGGATGGTCCAGAATCAGTTTGATGAACAAGCTGAAAAAAACTATCCGAACACAAGGCCTGACATGACTGAGGAGGTAGCTCTGGAAGAGAAGAACGTCAGTGGGGATCAAGATGACTTCACAGATAAAAGTTACCTACCTTGCATTGGCAATGTTTTGGGCTTCATCGATGGTGCTGTAGAAGTGAGATGGGCAACTGGTATTACAAGCAAGGTGGCCCCATGTGAAATTTTCCGGTTTGATAAACATGAAGGTTCAGCTGCAATCCCCGTAGAAGATGACACTGAGGAATTGAACAAAGAGATAATTCAACATGAAAAACAACCTAATAACGAAGAAGGAAAGGATTCCTTGAATTTAGATGATGCTGCTAAAAGTTGTCCAAGCGAGTCTAGTTCCTATTTCCTTCCTCAAGCTGCCATTGGATTTTTCTCGAGCATCGCTGTGAGTCTCTTTGGATCCCATAGTTACACATCACTTTCAGGATCTTCCCCATCAGTCTGTACTTCTGAAGTTGGAAAGGAATCCGGGATTTCCCATGAGAAAGGAATATTAGAAACTCGTGATGTCTGCACTGAGCCACATTCAACGTCTGAGTCTGACATTATTGGCAATGAAAATTTGAATCATGAAGGCGAAGACATCGAGGGGAACAGATATCTTCCATGTTTGAAAGACAAAGAGAATGCAGATCAGTTCAGGCAATTTGACATGCTTGCTGATTGTGCAGATCACCATTTTCATAGTGCTAGCAAGGAGTTGGCATTATCTCAGGTAAAAAGAGGTTGGATGAAGAAGGTTCAGCAAGAGTGGAGCATCTTAGAGAAAGATCTTCCTGAACAAATCTATGTCCGTGCGTTTGAGGAAAGGGTGGATCTACTGCGGGCAGCCATTGTTGGTACACCAGGAACTCCATATCATGATGGGCTTTTCTTCTTTGACATTTATCTTCCACCAGAGTATCCTCATGAGCCACCTATGGTACACTACATTTCTGGTGGGCTACGTGTGAACCCGAACTTGTATGAGTCTGGAAAGGTCTGTCTCAGTCTGCTTAACACGTGGACTGGTACGGGCAGTGAAGTTTGGAATCCTGGGAGCTCCACCATTCTTCAAGTTCTTCTCTCCCTTCAGGCCCTTGTGCTTAATGACAGGCCATATTTCAATGAAGCTGGATATGATCAGCAAGTGGGAAGAACTGAGGGAGAGAAAAACTCAGTGAGCTATAATGAAAATGCATTCCTTATGACTTGCAAGTCCATGCTGTTTTCTCTCCAAAAGCCGCCTAAGCATTTTGAGGGGCTTGTGATGGAACACTTCACTCAGCGCTCTGAAAATATTCTAATGGCTTGTAAGGCATATATGGAGGGGGTTCCAATAGGGTGTGCTGTTGATTTTCAGAAACCGGATGATAAAGAGGGAAGCTCTACTGGGTTCAAAATTATGCTTGCTAAGCTCTTTCAGAAACTAGTGGAGGCATTTTCTGCTAAGGGAATCGACTGCAACCAGTTCATCGCGCCAGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006464 GO:0006807 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010966 GO:0012505 GO:0015698 GO:0016036 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0032879 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0042592 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903795 GO:1903959 GO:2000185

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

924

Amino Acids

103.26

Weight (kDa)

4.75

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tSH3-B_UBE2O	PF23046	109 - 241	3.8e-40	UBE2O, tandem tSH3-B domain
SH3-B_UBE2O	PF23043	332 - 405	9.1e-18	UBE2O, SH3-B domain
SH3-C_UBE2O	PF23044	454 - 499	3.6e-06	UBE2O, ubiquitin binding SH3-C domain
UQ_con	PF00179	682 - 827	5.5e-23	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33770
fragaria_vesca	FvH4_3g09200 FvH4_3g29950
malus_domestica	MD05G1312700.v1.1 MD10G1294500.v1.1
prunus_persica	Prupe.4G047400_v2.0.a1 Prupe.4G047400_v2.0.a1
pyrus_communis	pycom05g29070 pycom05g29080 pycom10g24620 pycom10g24630 pycom10g24640
rosa_chinensis	RchiOBHm_Chr5g0008401
rosa_laevigata	RLG00000031568
rosa_multiflora	Rmu_co8007308.1_g000001 Rmu_co8292313.1_g000001 Rmu_sc0004326.1_g000003 Rmu_sc0028200.1_g000001 Rmu_ssc0000388.1_g000061
rosa_roxburghii	Rroxscaffold_1G00068090
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064200 Rh5BG061400 Rh5CG071300 Rh5DG060200 Rh5DG060300
rosa_wichuraiana	Rw5G005660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2500
AccB7I	CCANNNNNTGG	1 cut(s)	949
AccII	CGCG	1 cut(s)	2762
AciI	CCGC	2 cut(s)	2128, 2528
AcsI	RAATTY	5 cut(s)	658, 1001, 1473, 1600, 1864
AcuI	CTGAAG	2 cut(s)	1776, 2360
AcvI	CACGTG	1 cut(s)	2307
AdeI	CACNNNGTG	1 cut(s)	414
AfaI	GTAC	6 cut(s)	450, 485, 1750, 2146, 2229, 2317
AfeI	AGCGCT	1 cut(s)	2573
AfiI	CCNNNNNNNGG	5 cut(s)	356, 949, 1030, 1072, 1391
AflIII	ACRYGT	2 cut(s)	2251, 2304
AhlI	ACTAGT	1 cut(s)	2713
AjnI	CCWGG	4 cut(s)	496, 2149, 2338, 2764
AjuI	GAANNNNNNNTTGG	2 cut(s)	686, 718
AloI	GAACNNNNNNTCC	2 cut(s)	1005, 1037
Alw21I	GWGCWC	2 cut(s)	1209, 2348
Alw26I	GTCTC	4 cut(s)	38, 460, 1700, 2294
Ama87I	CYCGRG	1 cut(s)	1678
Aor51HI	AGCGCT	1 cut(s)	2573
AoxI	GGCC	6 cut(s)	347, 1007, 1301, 1461, 2379, 2399
ApeKI	GCWGC	7 cut(s)	102, 733, 1062, 1505, 1613, 1661, 2132
ApoI	RAATTY	5 cut(s)	658, 1001, 1473, 1600, 1864
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
Asp700I	GAANNNNTTC	2 cut(s)	1591, 2583
AspLEI	GCGC	2 cut(s)	2574, 2764
AspS9I	GGNCC	4 cut(s)	347, 1252, 1462, 2380
AsuC2I	CCSGG	2 cut(s)	1211, 1774
AsuHPI	GGTGA	3 cut(s)	433, 752, 1970
AsuII	TTCGAA	1 cut(s)	656
AsuNHI	GCTAGC	1 cut(s)	1994
AvaI	CYCGRG	1 cut(s)	1678
AvaII	GGWCC	1 cut(s)	1252
BaeGI	GKGCMC	1 cut(s)	96
BaeI	ACNNNNGTAYC	4 cut(s)	690, 723, 2189, 2222
BamHI	GGATCC	2 cut(s)	433, 1703
BanII	GRGCYC	1 cut(s)	2348
BauI	CACGAG	1 cut(s)	1806
BbrPI	CACGTG	1 cut(s)	2307
BbsI	GAAGAC	2 cut(s)	480, 1890
Bbv12I	GWGCWC	2 cut(s)	1209, 2348
BbvI	GCAGC	7 cut(s)	114, 745, 1074, 1492, 1600, 1648, 2144
BciT130I	CCWGG	4 cut(s)	498, 2151, 2340, 2766
BciVI	GTATCC	1 cut(s)	2217
BclI	TGATCA	3 cut(s)	276, 994, 2425
BcnI	CCSGG	2 cut(s)	1211, 1774
BcoDI	GTCTC	4 cut(s)	38, 460, 1700, 2294
BcuI	ACTAGT	1 cut(s)	2713
BfaI	CTAG	6 cut(s)	114, 126, 543, 1638, 1995, 2714
BfmI	CTRYAG	1 cut(s)	1422
BfoI	RGCGCY	1 cut(s)	2575
BfuI	GTATCC	1 cut(s)	2217
BglII	AGATCT	1 cut(s)	2074
BisI	GCNGC	8 cut(s)	103, 734, 1063, 1506, 1614, 1662, 2133, 2528
BlpI	GCTNAGC	1 cut(s)	2697
BlsI	GCNGC	8 cut(s)	104, 735, 1064, 1507, 1615, 1663, 2134, 2529
Bme1390I	CCNGG	6 cut(s)	498, 1211, 1774, 2151, 2340, 2766
Bme18I	GGWCC	1 cut(s)	1252
BmeT110I	CYCGRG	1 cut(s)	1678
BmgT120I	GGNCC	4 cut(s)	347, 1252, 1462, 2380
BmiI	GGNNCC	4 cut(s)	435, 1464, 1705, 2619
BmrFI	CCNGG	6 cut(s)	498, 1211, 1774, 2151, 2340, 2766
BmrI	ACTGGG	1 cut(s)	2685
BmsI	GCATC	4 cut(s)	1084, 1600, 1692, 2070
BmtI	GCTAGC	1 cut(s)	1998
BmuI	ACTGGG	1 cut(s)	2685
BpiI	GAAGAC	2 cut(s)	480, 1890
BplI	GAGNNNNNCTC	4 cut(s)	2444, 2476, 2654, 2686
BpmI	CTGGAG	1 cut(s)	583
Bpu10I	CCTNAGC	2 cut(s)	2532, 2733
Bpu1102I	GCTNAGC	1 cut(s)	2697
Bpu14I	TTCGAA	1 cut(s)	656
BpuEI	CTTGAG	2 cut(s)	140, 1641
BpuMI	CCSGG	2 cut(s)	1211, 1774
Bsa29I	ATCGAT	1 cut(s)	1413
BsaAI	YACGTR	2 cut(s)	2252, 2307
BsaJI	CCNNGG	3 cut(s)	350, 2339, 2765
BsaWI	WCCGGW	3 cut(s)	976, 1479, 2650
BsaXI	ACNNNNNCTCC	2 cut(s)	1224, 1254
Bsc4I	CCNNNNNNNGG	5 cut(s)	356, 949, 1030, 1072, 1391
Bse1I	ACTGG	8 cut(s)	52, 566, 749, 943, 1447, 2317, 2680, 2752
Bse3DI	GCAATG	4 cut(s)	61, 1127, 1402, 1864
BseBI	CCWGG	4 cut(s)	498, 2151, 2340, 2766
BseCI	ATCGAT	1 cut(s)	1413
BseDI	CCNNGG	3 cut(s)	350, 2339, 2765
BseGI	GGATG	4 cut(s)	1099, 1254, 2040, 2659
BseLI	CCNNNNNNNGG	5 cut(s)	356, 949, 1030, 1072, 1391
BseMI	GCAATG	4 cut(s)	61, 1127, 1402, 1864
BseNI	ACTGG	8 cut(s)	52, 566, 749, 943, 1447, 2317, 2680, 2752
BseRI	GAGGAG	2 cut(s)	660, 1331
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	7 cut(s)	114, 745, 1074, 1492, 1600, 1648, 2144
BsgI	GTGCAG	3 cut(s)	1122, 1801, 1992
Bsh1236I	CGCG	1 cut(s)	2762
BshFI	GGCC	6 cut(s)	349, 1009, 1303, 1463, 2381, 2401
BshVI	ATCGAT	1 cut(s)	1413
BsiHKAI	GWGCWC	2 cut(s)	1209, 2348
BsiHKCI	CYCGRG	1 cut(s)	1678
BsiSI	CCGG	5 cut(s)	977, 1211, 1480, 1773, 2651
BslFI	GGGAC	3 cut(s)	44, 194, 300
BslI	CCNNNNNNNGG	5 cut(s)	356, 949, 1030, 1072, 1391
BsmAI	GTCTC	4 cut(s)	38, 460, 1700, 2294
BsmBI	CGTCTC	1 cut(s)	460
BsmFI	GGGAC	3 cut(s)	44, 194, 300
BsmI	GAATGC	2 cut(s)	1936, 2483
BsnI	GGCC	6 cut(s)	349, 1009, 1303, 1463, 2381, 2401
BsoBI	CYCGRG	1 cut(s)	1678
Bsp119I	TTCGAA	1 cut(s)	656
Bsp1286I	GDGCHC	3 cut(s)	96, 1209, 2348
Bsp1720I	GCTNAGC	1 cut(s)	2697
BspACI	CCGC	2 cut(s)	2128, 2528
BspANI	GGCC	6 cut(s)	349, 1009, 1303, 1463, 2381, 2401
BspDI	ATCGAT	1 cut(s)	1413
BspFNI	CGCG	1 cut(s)	2762
BspHI	TCATGA	4 cut(s)	997, 1873, 2164, 2212
BspLI	GGNNCC	4 cut(s)	435, 1464, 1705, 2619
BspOI	GCTAGC	1 cut(s)	1998
BspT104I	TTCGAA	1 cut(s)	656
BsrDI	GCAATG	4 cut(s)	61, 1127, 1402, 1864
BsrI	ACTGG	8 cut(s)	52, 566, 749, 943, 1447, 2317, 2680, 2752
BssECI	CCNNGG	3 cut(s)	350, 2339, 2765
BssSI	CACGAG	1 cut(s)	1806
BssT1I	CCWWGG	1 cut(s)	350
Bst2BI	CACGAG	1 cut(s)	1806
Bst2UI	CCWGG	4 cut(s)	498, 2151, 2340, 2766
Bst4CI	ACNGT	9 cut(s)	35, 41, 383, 483, 529, 589, 1017, 1111, 1226
Bst6I	CTCTTC	1 cut(s)	1326
BstAPI	GCANNNNNTGC	1 cut(s)	2729
BstBAI	YACGTR	2 cut(s)	2252, 2307
BstBI	TTCGAA	1 cut(s)	656
BstC8I	GCNNGC	9 cut(s)	96, 100, 630, 756, 789, 1962, 1996, 2130, 2694
BstENI	CCTNNNNNAGG	1 cut(s)	1028
BstF5I	GGATG	4 cut(s)	1099, 1254, 2040, 2659
BstFNI	CGCG	1 cut(s)	2762
BstH2I	RGCGCY	1 cut(s)	2575
BstHHI	GCGC	2 cut(s)	2574, 2764
BstMAI	GTCTC	4 cut(s)	38, 460, 1700, 2294
BstMWI	GCNNNNNNNGC	5 cut(s)	1970, 2533, 2600, 2698, 2729
BstNI	CCWGG	4 cut(s)	498, 2151, 2340, 2766
BstNSI	RCATGY	1 cut(s)	1960
BstSCI	CCNGG	6 cut(s)	496, 1209, 1772, 2149, 2338, 2764
BstSFI	CTRYAG	1 cut(s)	1422
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	1 cut(s)	2762
BstV1I	GCAGC	7 cut(s)	114, 745, 1074, 1492, 1600, 1648, 2144
BstV2I	GAAGAC	2 cut(s)	480, 1890
BstX2I	RGATCY	7 cut(s)	202, 309, 433, 1703, 1730, 2074, 2119
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	7 cut(s)	202, 309, 433, 1703, 1730, 2074, 2119
Bsu15I	ATCGAT	1 cut(s)	1413
BsuI	GTATCC	1 cut(s)	2217
BsuRI	GGCC	6 cut(s)	349, 1009, 1303, 1463, 2381, 2401
BsuTUI	ATCGAT	1 cut(s)	1413
BtgZI	GCGATG	2 cut(s)	1669, 2743
BtsCI	GGATG	4 cut(s)	1099, 1254, 2040, 2659
BtsI	GCAGTG	1 cut(s)	2329
BtsIMutI	CAGTG	7 cut(s)	46, 988, 1351, 1527, 1818, 2329, 2469
Cac8I	GCNNGC	9 cut(s)	96, 100, 630, 756, 789, 1962, 1996, 2130, 2694
CciI	TCATGA	4 cut(s)	997, 1873, 2164, 2212
CfoI	GCGC	2 cut(s)	2574, 2764
Cfr13I	GGNCC	4 cut(s)	347, 1252, 1462, 2380
ClaI	ATCGAT	1 cut(s)	1413
Csp6I	GTAC	6 cut(s)	449, 484, 1749, 2145, 2228, 2316
CspCI	CAANNNNNGTGG	2 cut(s)	1440, 1475
CviQI	GTAC	6 cut(s)	449, 484, 1749, 2145, 2228, 2316
DraIII	CACNNNGTG	1 cut(s)	414
DrdI	GACNNNNNNGTC	1 cut(s)	2500
DseDI	GACNNNNNNGTC	1 cut(s)	2500
Eam1104I	CTCTTC	1 cut(s)	1326
EarI	CTCTTC	1 cut(s)	1326
Ecl136II	GAGCTC	1 cut(s)	2346
Eco130I	CCWWGG	1 cut(s)	350
Eco147I	AGGCCT	1 cut(s)	1303
Eco24I	GRGCYC	1 cut(s)	2348
Eco32I	GATATC	1 cut(s)	1904
Eco47I	GGWCC	1 cut(s)	1252
Eco47III	AGCGCT	1 cut(s)	2573
Eco53kI	GAGCTC	1 cut(s)	2346
Eco57I	CTGAAG	2 cut(s)	1776, 2360
Eco72I	CACGTG	1 cut(s)	2307
Eco88I	CYCGRG	1 cut(s)	1678
EcoICRI	GAGCTC	1 cut(s)	2346
EcoNI	CCTNNNNNAGG	1 cut(s)	1028
EcoO109I	RGGNCCY	1 cut(s)	2380
EcoRII	CCWGG	4 cut(s)	496, 2149, 2338, 2764
EcoRV	GATATC	1 cut(s)	1904
EcoT14I	CCWWGG	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	2485
EcoT38I	GRGCYC	1 cut(s)	2348
ErhI	CCWWGG	1 cut(s)	350
Esp3I	CGTCTC	1 cut(s)	460
FalI	AAGNNNNNCTT	2 cut(s)	1580, 1612
FaqI	GGGAC	3 cut(s)	44, 194, 300
FauI	CCCGC	1 cut(s)	2121
FbaI	TGATCA	3 cut(s)	276, 994, 2425
Fnu4HI	GCNGC	8 cut(s)	103, 734, 1063, 1506, 1614, 1662, 2133, 2528
FokI	GGATG	4 cut(s)	1106, 1261, 2047, 2666
FriOI	GRGCYC	1 cut(s)	2348
Fsp4HI	GCNGC	8 cut(s)	103, 734, 1063, 1506, 1614, 1662, 2133, 2528
FspBI	CTAG	6 cut(s)	114, 126, 543, 1638, 1995, 2714
GlaI	GCGC	2 cut(s)	2573, 2763
GluI	GCNGC	8 cut(s)	103, 734, 1063, 1506, 1614, 1662, 2133, 2528
GsuI	CTGGAG	1 cut(s)	583
HaeII	RGCGCY	1 cut(s)	2575
HaeIII	GGCC	6 cut(s)	349, 1009, 1303, 1463, 2381, 2401
HapII	CCGG	5 cut(s)	977, 1211, 1480, 1773, 2651
HhaI	GCGC	2 cut(s)	2574, 2764
Hin6I	GCGC	2 cut(s)	2572, 2762
HinP1I	GCGC	2 cut(s)	2572, 2762
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HpaII	CCGG	5 cut(s)	977, 1211, 1480, 1773, 2651
HphI	GGTGA	3 cut(s)	433, 752, 1970
Hpy166II	GTNNAC	6 cut(s)	289, 379, 2147, 2230, 2257, 2310
Hpy8I	GTNNAC	6 cut(s)	289, 379, 2147, 2230, 2257, 2310
HpyAV	CCTTC	9 cut(s)	354, 575, 596, 1490, 1577, 1661, 1871, 2035, 2384
HpyCH4III	ACNGT	9 cut(s)	35, 41, 383, 483, 529, 589, 1017, 1111, 1226
HpyCH4IV	ACGT	4 cut(s)	1341, 1835, 2251, 2306
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1970, 2533, 2600, 2698, 2729
HpySE526I	ACGT	4 cut(s)	1341, 1835, 2251, 2306
HspAI	GCGC	2 cut(s)	2572, 2762
Ksp22I	TGATCA	3 cut(s)	276, 994, 2425
LmnI	GCTCC	5 cut(s)	673, 784, 2058, 2343, 2351
Lsp1109I	GCAGC	7 cut(s)	114, 745, 1074, 1492, 1600, 1648, 2144
LweI	GCATC	4 cut(s)	1084, 1600, 1692, 2070
MaeI	CTAG	6 cut(s)	114, 126, 543, 1638, 1995, 2714
MaeII	ACGT	4 cut(s)	1341, 1835, 2251, 2306
MaeIII	GTNAC	7 cut(s)	17, 35, 421, 557, 740, 1376, 1712
MfeI	CAATTG	2 cut(s)	727, 759
MflI	RGATCY	7 cut(s)	202, 309, 433, 1703, 1730, 2074, 2119
MhlI	GDGCHC	3 cut(s)	96, 1209, 2348
MlyI	GAGTC	5 cut(s)	14, 1643, 1702, 1850, 2282
MmeI	TCCRAC	2 cut(s)	1741, 2012
Mph1103I	ATGCAT	1 cut(s)	2485
MroXI	GAANNNNTTC	2 cut(s)	1591, 2583
MseI	TTAA	5 cut(s)	237, 611, 852, 2301, 2391
MslI	CAYNNNNRTG	3 cut(s)	239, 323, 1688
MspA1I	CMGCKG	1 cut(s)	1505
MspI	CCGG	5 cut(s)	977, 1211, 1480, 1773, 2651
MspR9I	CCNGG	6 cut(s)	498, 1211, 1774, 2151, 2340, 2766
MunI	CAATTG	2 cut(s)	727, 759
Mva1269I	GAATGC	2 cut(s)	1936, 2483
MvaI	CCWGG	4 cut(s)	498, 2151, 2340, 2766
MvnI	CGCG	1 cut(s)	2762
MwoI	GCNNNNNNNGC	5 cut(s)	1970, 2533, 2600, 2698, 2729
NciI	CCSGG	2 cut(s)	1211, 1774
NheI	GCTAGC	1 cut(s)	1994
NlaIV	GGNNCC	4 cut(s)	435, 1464, 1705, 2619
NmuCI	GTSAC	3 cut(s)	17, 421, 740
NsiI	ATGCAT	1 cut(s)	2485
NspI	RCATGY	1 cut(s)	1960
NspV	TTCGAA	1 cut(s)	656
PaeR7I	CTCGAG	1 cut(s)	1678
PagI	TCATGA	4 cut(s)	997, 1873, 2164, 2212
PceI	AGGCCT	1 cut(s)	1303
PctI	GAATGC	2 cut(s)	1936, 2483
PdmI	GAANNNNTTC	2 cut(s)	1591, 2583
PfeI	GAWTC	9 cut(s)	298, 686, 959, 1258, 1592, 1769, 1870, 2335, 2739
PflMI	CCANNNNNTGG	1 cut(s)	949
PfoI	TCCNGGA	2 cut(s)	496, 1772
PkrI	GCNGC	8 cut(s)	104, 735, 1064, 1507, 1615, 1663, 2134, 2529
PleI	GAGTC	5 cut(s)	14, 1642, 1701, 1849, 2281
PmaCI	CACGTG	1 cut(s)	2307
PmlI	CACGTG	1 cut(s)	2307
PpsI	GAGTC	5 cut(s)	14, 1642, 1701, 1849, 2281
Ppu21I	YACGTR	2 cut(s)	2252, 2307
Psp124BI	GAGCTC	1 cut(s)	2348
Psp6I	CCWGG	4 cut(s)	496, 2149, 2338, 2764
PspCI	CACGTG	1 cut(s)	2307
PspGI	CCWGG	4 cut(s)	496, 2149, 2338, 2764
PspN4I	GGNNCC	4 cut(s)	435, 1464, 1705, 2619
PspPI	GGNCC	4 cut(s)	347, 1252, 1462, 2380
PsuI	RGATCY	7 cut(s)	202, 309, 433, 1703, 1730, 2074, 2119
PvuII	CAGCTG	1 cut(s)	1505
RsaI	GTAC	6 cut(s)	450, 485, 1750, 2146, 2229, 2317
RsaNI	GTAC	6 cut(s)	449, 484, 1749, 2145, 2228, 2316
RseI	CAYNNNNRTG	3 cut(s)	239, 323, 1688
SacI	GAGCTC	1 cut(s)	2348
SaqAI	TTAA	5 cut(s)	237, 611, 852, 2301, 2391
SatI	GCNGC	8 cut(s)	103, 734, 1063, 1506, 1614, 1662, 2133, 2528
Sau96I	GGNCC	4 cut(s)	347, 1252, 1462, 2380
SchI	GAGTC	5 cut(s)	14, 1643, 1702, 1850, 2282
ScrFI	CCNGG	6 cut(s)	498, 1211, 1774, 2151, 2340, 2766
SduI	GDGCHC	3 cut(s)	96, 1209, 2348
SfaNI	GCATC	4 cut(s)	1084, 1600, 1692, 2070
SfcI	CTRYAG	1 cut(s)	1422
Sfr274I	CTCGAG	1 cut(s)	1678
SfuI	TTCGAA	1 cut(s)	656
SinI	GGWCC	1 cut(s)	1252
SlaI	CTCGAG	1 cut(s)	1678
SmiMI	CAYNNNNRTG	3 cut(s)	239, 323, 1688
SmlI	CTYRAG	3 cut(s)	119, 1656, 1678
SmoI	CTYRAG	3 cut(s)	119, 1656, 1678
SpeI	ACTAGT	1 cut(s)	2713
SseBI	AGGCCT	1 cut(s)	1303
SsiI	CCGC	2 cut(s)	2128, 2528
SspI	AATATT	3 cut(s)	80, 1797, 2584
SspMI	CTAG	6 cut(s)	114, 126, 543, 1638, 1995, 2714
SstI	GAGCTC	1 cut(s)	2348
StuI	AGGCCT	1 cut(s)	1303
StyD4I	CCNGG	6 cut(s)	496, 1209, 1772, 2149, 2338, 2764
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	9 cut(s)	35, 41, 383, 483, 529, 589, 1017, 1111, 1226
TaiI	ACGT	4 cut(s)	1344, 1838, 2254, 2309
TaqI	TCGA	7 cut(s)	159, 293, 656, 1413, 1679, 1890, 2742
TatI	WGTACW	1 cut(s)	1748
TauI	GCSGC	1 cut(s)	2530
TfiI	GAWTC	9 cut(s)	298, 686, 959, 1258, 1592, 1769, 1870, 2335, 2739
Tru1I	TTAA	5 cut(s)	237, 611, 852, 2301, 2391
Tru9I	TTAA	5 cut(s)	237, 611, 852, 2301, 2391
TscAI	CASTG	7 cut(s)	46, 988, 1351, 1534, 1825, 2329, 2469
TseFI	GTSAC	3 cut(s)	17, 421, 740
TseI	GCWGC	7 cut(s)	102, 733, 1062, 1505, 1613, 1661, 2132
Tsp45I	GTSAC	3 cut(s)	17, 421, 740
TspGWI	ACGGA	2 cut(s)	302, 2087
TspRI	CASTG	7 cut(s)	46, 988, 1351, 1534, 1825, 2329, 2469
Van91I	CCANNNNNTGG	1 cut(s)	949
VpaK11BI	GGWCC	1 cut(s)	1252
XagI	CCTNNNNNAGG	1 cut(s)	1028
XapI	RAATTY	5 cut(s)	658, 1001, 1473, 1600, 1864
XceI	RCATGY	1 cut(s)	1960
XhoI	CTCGAG	1 cut(s)	1678
XmnI	GAANNNNTTC	2 cut(s)	1591, 2583
XspI	CTAG	6 cut(s)	114, 126, 543, 1638, 1995, 2714
Zsp2I	ATGCAT	1 cut(s)	2485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.