Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006171

Physical Location & Seq

Genomic Coordinates Reverse (-)

5055082 .. 5058521

Gene Structure 3440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG061400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2784 bp

ATGGATATGGTTCTTAGTGACTCTGGTTGGGACAGTTACAGTGAGACTGGTAGCAATGAGGATCAAGAGGGAAACGAATATTTCTATGGTGGGCATGCCAGCAGCCTATTGTCTAGCCTCGAGGCTAGCATTGGGAAAATTGATGACTTTCTCTCATTCGAGAGGGGATTTATATATGGGGACATAGTAAGCTCCGTAAGAGATCCATCTGGACAAATGGGAAAAGTTGTTGGCATTAAGATGTCTGTTGATTTGGAGAGTGTGAATGGAAATATGATAAAAAATGTAAACTCGAAGAATCTGTCAAAGATCCGTCCCATTTCAGTGGGGGATTATGTTGTTTGTGGGCCTTGGCTTGGAAGGGTGGATAGAGTAGTTGACTGTGTAGCTGTTGTCTTTGACGATGGCACAGAGTGTGTGGTGACTGCTGTGGATCCAGAGAAGCTCATACCCGTCTCCCCAAACATACTTGAAGACCCACAGTACCCATATTATCCAGGACAGAGAGTAAAGGTTAGACTCTCAACTGTTTCCAAATCAACTAGATGGTTTTGTGGTAACTGGAGGGAAAATCAAGATGAAGGAACTGTTTGTTCTTTGGAAGGAGGTTTAATGTATGTTGATTGGCTTGCCTCTGTTCTCGTAGGTTGTGGTTCGAATTTTCCTGCTCCTCCACGTCTGCTGGATTCAAAGAAATTGACTTTGGTATCATGTTTCTCTCATGCCAATTGGCAGCTGGGTGACTGGTGTATGCTTGCAATTGCTGAGTGTAAAGGTTTTTCGGAGCAGGCTTTTCATAGAACTTCTACTTGTGAGCTCACTAACAAGCAAAACAATTCAGAAAGAGGATTTAAGAGAAGAAATCCCAAGTCAAAAATTGAGGAAATCTTTGTAATCTCAAAGACAAAGACCAAAATTGATGTTCTGTGGCAAGATGGTAGCCAGTCTTTGGAAGTGGATTCACAGACATTAGTTCCGGTCAGTGTTGTAAATGATCATGAATTTTGGCCTGAACAGTTTGTCCTTGAAAAGGGAACTTATGATGATCCAAACTTGTTTAGCAGCCAAAGGTGGGGTGTTGTGCATGGTGTGGATGCAAAGGAACGAACAGTAAAGGTGCAATGGAAAACTTTAACTGCACCCGAAACAAATAATTTAGAGGGAGAGCAGATGGAGGAAGTTGTAAGTGCTTATGAACTTGTTGAGCACCCGGATTACTCCTACTGTTTAGGAGATTATGTGTTCAGGATGGTCCAGAATCAGTTTGATGAACAAGTTGATAAAAACTATCCGAACACAAGGTCTGCCATGACTGAGGAGGTAGCTCCGGAAGAGAAGAACTTCAGTGGGGATCAAGATGACTTCACAGATAAAAGTTACCTACCTTGCATTGGCAATGTTTTGGGCTTCATAGATGGTGCTGTAGAAGTGAGATGGGCAACTGGTATTACAAGCAAGGTGGCCCCATGTGAAATTTTCCGGTTTGATAAACATGAAGGTTCAGCTGCAATCCCCGGAGAAGATGACACTGAGGAATTGAACAAAGAGATAATTCAACATGAAAAACAACCTAATAACGAAGAAGGAAAGGATTCCTTGAATTTAGATGATGCTGCTAAAAGTTGTAAACCGTACACAAGCGAGTCTAGTTCCTATTTCCTTCCTCAAGCTGCCATTGGATTTTTCTCGAGCATCGCTGTGAGTCTCTTTGGATCCCATAGTTACACATCACTTTCAGGTCCTTCACCATCAGTCTGTACTTCTGAAGTTGGAAAGGAATCCGGGATCTCCCATGAGAAAGGAATAGTAGAAACTCGTGATGTCTGCACTGAGCCACATTCAACGTCTGAGTCTGACATTATTGGCAATGAAAATTTGAATCATGAAGGCGAAGACATTGAGGGGAACAGATATCTTCCATGTTTGAAAGACAAAGAGAGTGCAGATCAGTTCAGGCAATTTGACATGCTTGCTGATTGTGCAGATCACCATTTTCATAGTGCCAGCAAGGAGTTGGCATTATCTCAGGTAAAAAGAGGTTGGATGAAGAAGGTTCAGCAAGAGTGGAGCATCTTAGAGAAAGATCTTCCTGAACAAATCTATGTCCGTGCGTTTGAGGAAAGGATGGATCTACTGCGGGCAGCCATTGTTGGTACACCAGGAACTCCATATCATGATGGGCTTTTCTTCTTTGACATTTATCTTCCACCAGAGTATCCTCATGAGCCACCTATGGTACACTACATTTCTGGTGGGCTACGTGTGAACCCGAACTTGTATGAGTCTGGAAAGGTCTGTCTCAGTCTGCTTAACACGTGGACTGGTACGGGCAGTGAAGTTTGGAATCCTGGGAGCTCCACCATTCTTCAAGTTCTTCTCTCCCTTCAGGCCCTTGTGCTTAATGACAGGCCATATTTCAATGAAGCTGGATATGATCAGCAGGTGGGAAGAACTGAGGGAGAGAAAAACTCAGTGAGCTATAATGAAAATGCATTCCTTATGACTTGCAAGTCCATGCTGTTTTCTCTCCAAAAGCCGCCTAAGCATTTTGAGGGGCTTGTGATGGAACACTTCACTCAGCGCTCTGAAAATATTCTAATGGCTTGTAAGGCATATATGGAGGGGGTTCCAATAGGGTGTGCTGTTGATTTTCAGAAAACCGATGATAAAGAGGGAAGCTCTACTGGGTTCAAAATTATGCTTGCTAAGCTCTTTCAGAAACTAGTGGAGGCATTTTCTGCTAAGGGAATCGACTGCAACCAGTTCATCGCGCCAGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006464 GO:0006807 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010966 GO:0012505 GO:0015698 GO:0016036 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0032879 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0042592 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903795 GO:1903959 GO:2000185

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

927

Amino Acids

103.54

Weight (kDa)

4.8

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tSH3-B_UBE2O	PF23046	109 - 241	7.2e-40	UBE2O, tandem tSH3-B domain
SH3-B_UBE2O	PF23043	332 - 405	3.8e-18	UBE2O, SH3-B domain
SH3-C_UBE2O	PF23044	453 - 499	2.3e-06	UBE2O, ubiquitin binding SH3-C domain
UQ_con	PF00179	685 - 830	3.1e-23	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33770
fragaria_vesca	FvH4_3g09200 FvH4_3g29950
malus_domestica	MD05G1312700.v1.1 MD10G1294500.v1.1
prunus_persica	Prupe.4G047400_v2.0.a1 Prupe.4G047400_v2.0.a1
pyrus_communis	pycom05g29070 pycom05g29080 pycom10g24620 pycom10g24630 pycom10g24640
rosa_chinensis	RchiOBHm_Chr5g0008401
rosa_laevigata	RLG00000031568
rosa_multiflora	Rmu_co8007308.1_g000001 Rmu_co8292313.1_g000001 Rmu_sc0004326.1_g000003 Rmu_sc0028200.1_g000001 Rmu_ssc0000388.1_g000061
rosa_roxburghii	Rroxscaffold_1G00068090
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064200 Rh5BG061400 Rh5CG071300 Rh5DG060200 Rh5DG060300
rosa_wichuraiana	Rw5G005660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2431
AasI	GACNNNNNNGTC	1 cut(s)	2509
AbsI	CCTCGAGG	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	2431
AccB7I	CCANNNNNTGG	1 cut(s)	949
AccII	CGCG	1 cut(s)	2771
AccIII	TCCGGA	1 cut(s)	1327
AciI	CCGC	2 cut(s)	2137, 2537
AcsI	RAATTY	5 cut(s)	658, 1001, 1473, 1600, 1873
AcuI	CTGAAG	3 cut(s)	1327, 1785, 2369
AcvI	CACGTG	1 cut(s)	2316
AdeI	CACNNNGTG	1 cut(s)	414
AfaI	GTAC	6 cut(s)	485, 1634, 1759, 2155, 2238, 2326
AfeI	AGCGCT	1 cut(s)	2582
AfiI	CCNNNNNNNGG	5 cut(s)	356, 949, 1030, 1072, 1391
AflIII	ACRYGT	2 cut(s)	2260, 2313
AhlI	ACTAGT	1 cut(s)	2722
AjiI	CACGTC	1 cut(s)	677
AjnI	CCWGG	4 cut(s)	496, 2158, 2347, 2773
AjuI	GAANNNNNNNTTGG	2 cut(s)	686, 718
AloI	GAACNNNNNNTCC	2 cut(s)	1005, 1037
Alw21I	GWGCWC	3 cut(s)	819, 1209, 2357
Alw26I	GTCTC	4 cut(s)	38, 460, 1709, 2303
Ama87I	CYCGRG	2 cut(s)	119, 1687
Aor13HI	TCCGGA	1 cut(s)	1327
Aor51HI	AGCGCT	1 cut(s)	2582
AoxI	GGCC	5 cut(s)	347, 1007, 1461, 2388, 2408
ApeKI	GCWGC	7 cut(s)	102, 733, 1062, 1505, 1613, 1670, 2141
ApoI	RAATTY	5 cut(s)	658, 1001, 1473, 1600, 1873
ArsI	GACNNNNNNTTYG	4 cut(s)	287, 319, 1286, 1318
Asp700I	GAANNNNTTC	3 cut(s)	1340, 1591, 2592
AspLEI	GCGC	2 cut(s)	2583, 2773
AspS9I	GGNCC	5 cut(s)	347, 1252, 1462, 1739, 2389
AsuC2I	CCSGG	3 cut(s)	1211, 1515, 1783
AsuHPI	GGTGA	4 cut(s)	433, 752, 1737, 1979
AsuII	TTCGAA	1 cut(s)	656
AsuNHI	GCTAGC	1 cut(s)	125
AvaI	CYCGRG	2 cut(s)	119, 1687
AvaII	GGWCC	2 cut(s)	1252, 1739
BaeI	ACNNNNGTAYC	4 cut(s)	690, 723, 2198, 2231
BamHI	GGATCC	2 cut(s)	433, 1712
BanII	GRGCYC	2 cut(s)	819, 2357
BauI	CACGAG	1 cut(s)	1815
BbrPI	CACGTG	1 cut(s)	2316
BbsI	GAAGAC	2 cut(s)	480, 1899
Bbv12I	GWGCWC	3 cut(s)	819, 1209, 2357
BbvI	GCAGC	7 cut(s)	114, 745, 1074, 1492, 1600, 1657, 2153
BciT130I	CCWGG	4 cut(s)	498, 2160, 2349, 2775
BciVI	GTATCC	1 cut(s)	2226
BclI	TGATCA	2 cut(s)	994, 2434
BcnI	CCSGG	3 cut(s)	1211, 1515, 1783
BcoDI	GTCTC	4 cut(s)	38, 460, 1709, 2303
BcuI	ACTAGT	1 cut(s)	2722
BfaI	CTAG	5 cut(s)	114, 126, 543, 1647, 2723
BfmI	CTRYAG	1 cut(s)	1422
BfoI	RGCGCY	1 cut(s)	2584
BfuAI	ACCTGC	1 cut(s)	2431
BfuI	GTATCC	1 cut(s)	2226
BglII	AGATCT	1 cut(s)	2083
BisI	GCNGC	8 cut(s)	103, 734, 1063, 1506, 1614, 1671, 2142, 2537
BlpI	GCTNAGC	1 cut(s)	2706
BlsI	GCNGC	8 cut(s)	104, 735, 1064, 1507, 1615, 1672, 2143, 2538
Bme1390I	CCNGG	7 cut(s)	498, 1211, 1515, 1783, 2160, 2349, 2775
Bme18I	GGWCC	2 cut(s)	1252, 1739
BmeT110I	CYCGRG	2 cut(s)	119, 1687
BmgBI	CACGTC	1 cut(s)	677
BmgT120I	GGNCC	5 cut(s)	347, 1252, 1462, 1739, 2389
BmiI	GGNNCC	4 cut(s)	435, 1464, 1714, 2628
BmrFI	CCNGG	7 cut(s)	498, 1211, 1515, 1783, 2160, 2349, 2775
BmrI	ACTGGG	1 cut(s)	2694
BmsI	GCATC	4 cut(s)	1084, 1600, 1701, 2079
BmtI	GCTAGC	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	2694
BpiI	GAAGAC	2 cut(s)	480, 1899
BplI	GAGNNNNNCTC	4 cut(s)	2453, 2485, 2663, 2695
BpmI	CTGGAG	1 cut(s)	583
Bpu10I	CCTNAGC	2 cut(s)	2541, 2742
Bpu1102I	GCTNAGC	1 cut(s)	2706
Bpu14I	TTCGAA	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	1650
BpuMI	CCSGG	3 cut(s)	1211, 1515, 1783
BsaAI	YACGTR	2 cut(s)	2261, 2316
BsaJI	CCNNGG	4 cut(s)	350, 1513, 2348, 2774
BsaWI	WCCGGW	3 cut(s)	976, 1327, 1479
BsaXI	ACNNNNNCTCC	2 cut(s)	1224, 1254
Bsc4I	CCNNNNNNNGG	5 cut(s)	356, 949, 1030, 1072, 1391
Bse1I	ACTGG	8 cut(s)	52, 566, 749, 943, 1447, 2326, 2689, 2761
Bse3DI	GCAATG	4 cut(s)	61, 1127, 1402, 1873
BseAI	TCCGGA	1 cut(s)	1327
BseBI	CCWGG	4 cut(s)	498, 2160, 2349, 2775
BseDI	CCNNGG	4 cut(s)	350, 1513, 2348, 2774
BseGI	GGATG	4 cut(s)	1099, 1254, 2049, 2130
BseLI	CCNNNNNNNGG	5 cut(s)	356, 949, 1030, 1072, 1391
BseMI	GCAATG	4 cut(s)	61, 1127, 1402, 1873
BseNI	ACTGG	8 cut(s)	52, 566, 749, 943, 1447, 2326, 2689, 2761
BseRI	GAGGAG	2 cut(s)	660, 1331
BseXI	GCAGC	7 cut(s)	114, 745, 1074, 1492, 1600, 1657, 2153
BseYI	CCCAGC	1 cut(s)	736
BsgI	GTGCAG	4 cut(s)	1122, 1810, 1962, 2001
Bsh1236I	CGCG	1 cut(s)	2771
BshFI	GGCC	5 cut(s)	349, 1009, 1463, 2390, 2410
BsiHKAI	GWGCWC	3 cut(s)	819, 1209, 2357
BsiHKCI	CYCGRG	2 cut(s)	119, 1687
BsiSI	CCGG	6 cut(s)	977, 1211, 1328, 1480, 1515, 1782
BslFI	GGGAC	3 cut(s)	44, 194, 300
BslI	CCNNNNNNNGG	5 cut(s)	356, 949, 1030, 1072, 1391
BsmAI	GTCTC	4 cut(s)	38, 460, 1709, 2303
BsmBI	CGTCTC	1 cut(s)	460
BsmFI	GGGAC	3 cut(s)	44, 194, 300
BsmI	GAATGC	1 cut(s)	2492
BsnI	GGCC	5 cut(s)	349, 1009, 1463, 2390, 2410
BsoBI	CYCGRG	2 cut(s)	119, 1687
Bsp119I	TTCGAA	1 cut(s)	656
Bsp1286I	GDGCHC	3 cut(s)	819, 1209, 2357
Bsp13I	TCCGGA	1 cut(s)	1327
Bsp1720I	GCTNAGC	1 cut(s)	2706
BspACI	CCGC	2 cut(s)	2137, 2537
BspANI	GGCC	5 cut(s)	349, 1009, 1463, 2390, 2410
BspEI	TCCGGA	1 cut(s)	1327
BspFNI	CGCG	1 cut(s)	2771
BspHI	TCATGA	4 cut(s)	997, 1882, 2173, 2221
BspLI	GGNNCC	4 cut(s)	435, 1464, 1714, 2628
BspMI	ACCTGC	1 cut(s)	2431
BspOI	GCTAGC	1 cut(s)	129
BspT104I	TTCGAA	1 cut(s)	656
BsrDI	GCAATG	4 cut(s)	61, 1127, 1402, 1873
BsrI	ACTGG	8 cut(s)	52, 566, 749, 943, 1447, 2326, 2689, 2761
BssECI	CCNNGG	4 cut(s)	350, 1513, 2348, 2774
BssSI	CACGAG	1 cut(s)	1815
BssT1I	CCWWGG	1 cut(s)	350
Bst2BI	CACGAG	1 cut(s)	1815
Bst2UI	CCWGG	4 cut(s)	498, 2160, 2349, 2775
Bst6I	CTCTTC	1 cut(s)	1326
BstAPI	GCANNNNNTGC	1 cut(s)	2738
BstBAI	YACGTR	2 cut(s)	2261, 2316
BstBI	TTCGAA	1 cut(s)	656
BstENI	CCTNNNNNAGG	1 cut(s)	1028
BstF5I	GGATG	4 cut(s)	1099, 1254, 2049, 2130
BstFNI	CGCG	1 cut(s)	2771
BstH2I	RGCGCY	1 cut(s)	2584
BstHHI	GCGC	2 cut(s)	2583, 2773
BstMAI	GTCTC	4 cut(s)	38, 460, 1709, 2303
BstMWI	GCNNNNNNNGC	5 cut(s)	1979, 2542, 2609, 2707, 2738
BstNI	CCWGG	4 cut(s)	498, 2160, 2349, 2775
BstNSI	RCATGY	2 cut(s)	98, 1969
BstSCI	CCNGG	7 cut(s)	496, 1209, 1513, 1781, 2158, 2347, 2773
BstSFI	CTRYAG	1 cut(s)	1422
BstUI	CGCG	1 cut(s)	2771
BstV1I	GCAGC	7 cut(s)	114, 745, 1074, 1492, 1600, 1657, 2153
BstV2I	GAAGAC	2 cut(s)	480, 1899
BstX2I	RGATCY	7 cut(s)	202, 309, 433, 1712, 1785, 2083, 2128
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	7 cut(s)	202, 309, 433, 1712, 1785, 2083, 2128
BsuI	GTATCC	1 cut(s)	2226
BsuRI	GGCC	5 cut(s)	349, 1009, 1463, 2390, 2410
BtgZI	GCGATG	2 cut(s)	1678, 2752
BtrI	CACGTC	1 cut(s)	677
BtsCI	GGATG	4 cut(s)	1099, 1254, 2049, 2130
BtsI	GCAGTG	1 cut(s)	2338
BtsIMutI	CAGTG	8 cut(s)	46, 330, 988, 1351, 1527, 1827, 2338, 2478
BveI	ACCTGC	1 cut(s)	2431
CciI	TCATGA	4 cut(s)	997, 1882, 2173, 2221
CfoI	GCGC	2 cut(s)	2583, 2773
Cfr13I	GGNCC	5 cut(s)	347, 1252, 1462, 1739, 2389
Csp6I	GTAC	6 cut(s)	484, 1633, 1758, 2154, 2237, 2325
CspCI	CAANNNNNGTGG	2 cut(s)	1440, 1475
CviQI	GTAC	6 cut(s)	484, 1633, 1758, 2154, 2237, 2325
DraIII	CACNNNGTG	1 cut(s)	414
DrdI	GACNNNNNNGTC	1 cut(s)	2509
DseDI	GACNNNNNNGTC	1 cut(s)	2509
Eam1104I	CTCTTC	1 cut(s)	1326
EarI	CTCTTC	1 cut(s)	1326
Ecl136II	GAGCTC	2 cut(s)	817, 2355
Eco130I	CCWWGG	1 cut(s)	350
Eco24I	GRGCYC	2 cut(s)	819, 2357
Eco32I	GATATC	1 cut(s)	1913
Eco47I	GGWCC	2 cut(s)	1252, 1739
Eco47III	AGCGCT	1 cut(s)	2582
Eco53kI	GAGCTC	2 cut(s)	817, 2355
Eco57I	CTGAAG	3 cut(s)	1327, 1785, 2369
Eco72I	CACGTG	1 cut(s)	2316
Eco88I	CYCGRG	2 cut(s)	119, 1687
EcoICRI	GAGCTC	2 cut(s)	817, 2355
EcoNI	CCTNNNNNAGG	1 cut(s)	1028
EcoO109I	RGGNCCY	2 cut(s)	1739, 2389
EcoRII	CCWGG	4 cut(s)	496, 2158, 2347, 2773
EcoRV	GATATC	1 cut(s)	1913
EcoT14I	CCWWGG	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	2494
EcoT38I	GRGCYC	2 cut(s)	819, 2357
ErhI	CCWWGG	1 cut(s)	350
Esp3I	CGTCTC	1 cut(s)	460
FalI	AAGNNNNNCTT	2 cut(s)	1580, 1612
FaqI	GGGAC	3 cut(s)	44, 194, 300
FauI	CCCGC	1 cut(s)	2130
FbaI	TGATCA	2 cut(s)	994, 2434
Fnu4HI	GCNGC	8 cut(s)	103, 734, 1063, 1506, 1614, 1671, 2142, 2537
FokI	GGATG	4 cut(s)	1106, 1261, 2056, 2137
FriOI	GRGCYC	2 cut(s)	819, 2357
Fsp4HI	GCNGC	8 cut(s)	103, 734, 1063, 1506, 1614, 1671, 2142, 2537
FspBI	CTAG	5 cut(s)	114, 126, 543, 1647, 2723
GlaI	GCGC	2 cut(s)	2582, 2772
GluI	GCNGC	8 cut(s)	103, 734, 1063, 1506, 1614, 1671, 2142, 2537
GsaI	CCCAGC	1 cut(s)	740
GsuI	CTGGAG	1 cut(s)	583
HaeII	RGCGCY	1 cut(s)	2584
HaeIII	GGCC	5 cut(s)	349, 1009, 1463, 2390, 2410
HapII	CCGG	6 cut(s)	977, 1211, 1328, 1480, 1515, 1782
HhaI	GCGC	2 cut(s)	2583, 2773
Hin6I	GCGC	2 cut(s)	2581, 2771
HinP1I	GCGC	2 cut(s)	2581, 2771
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HpaII	CCGG	6 cut(s)	977, 1211, 1328, 1480, 1515, 1782
HphI	GGTGA	4 cut(s)	433, 752, 1737, 1979
Hpy166II	GTNNAC	8 cut(s)	289, 379, 1628, 1635, 2156, 2239, 2266, 2319
Hpy188I	TCNGA	9 cut(s)	784, 841, 1293, 1765, 1849, 1855, 2587, 2655, 2718
Hpy8I	GTNNAC	8 cut(s)	289, 379, 1628, 1635, 2156, 2239, 2266, 2319
HpyCH4IV	ACGT	4 cut(s)	676, 1844, 2260, 2315
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1979, 2542, 2609, 2707, 2738
HpySE526I	ACGT	4 cut(s)	676, 1844, 2260, 2315
HspAI	GCGC	2 cut(s)	2581, 2771
Kpn2I	TCCGGA	1 cut(s)	1327
Ksp22I	TGATCA	2 cut(s)	994, 2434
LmnI	GCTCC	7 cut(s)	197, 673, 784, 1330, 2067, 2352, 2360
Lsp1109I	GCAGC	7 cut(s)	114, 745, 1074, 1492, 1600, 1657, 2153
LweI	GCATC	4 cut(s)	1084, 1600, 1701, 2079
MaeI	CTAG	5 cut(s)	114, 126, 543, 1647, 2723
MaeII	ACGT	4 cut(s)	676, 1844, 2260, 2315
MaeIII	GTNAC	7 cut(s)	17, 35, 421, 557, 740, 1376, 1721
MfeI	CAATTG	2 cut(s)	727, 759
MflI	RGATCY	7 cut(s)	202, 309, 433, 1712, 1785, 2083, 2128
MhlI	GDGCHC	3 cut(s)	819, 1209, 2357
MlyI	GAGTC	6 cut(s)	14, 513, 1652, 1711, 1859, 2291
MmeI	TCCRAC	2 cut(s)	1750, 2021
Mph1103I	ATGCAT	1 cut(s)	2494
MroI	TCCGGA	1 cut(s)	1327
MroXI	GAANNNNTTC	3 cut(s)	1340, 1591, 2592
MseI	TTAA	6 cut(s)	237, 611, 852, 1133, 2310, 2400
MslI	CAYNNNNRTG	3 cut(s)	239, 323, 1697
MspA1I	CMGCKG	2 cut(s)	736, 1505
MspI	CCGG	6 cut(s)	977, 1211, 1328, 1480, 1515, 1782
MspR9I	CCNGG	7 cut(s)	498, 1211, 1515, 1783, 2160, 2349, 2775
MunI	CAATTG	2 cut(s)	727, 759
Mva1269I	GAATGC	1 cut(s)	2492
MvaI	CCWGG	4 cut(s)	498, 2160, 2349, 2775
MvnI	CGCG	1 cut(s)	2771
MwoI	GCNNNNNNNGC	5 cut(s)	1979, 2542, 2609, 2707, 2738
NciI	CCSGG	3 cut(s)	1211, 1515, 1783
NheI	GCTAGC	1 cut(s)	125
NlaIV	GGNNCC	4 cut(s)	435, 1464, 1714, 2628
NmuCI	GTSAC	3 cut(s)	17, 421, 740
NsiI	ATGCAT	1 cut(s)	2494
NspI	RCATGY	2 cut(s)	98, 1969
NspV	TTCGAA	1 cut(s)	656
PaeI	GCATGC	1 cut(s)	98
PaeR7I	CTCGAG	2 cut(s)	119, 1687
PagI	TCATGA	4 cut(s)	997, 1882, 2173, 2221
PaqCI	CACCTGC	1 cut(s)	2431
PctI	GAATGC	1 cut(s)	2492
PdmI	GAANNNNTTC	3 cut(s)	1340, 1591, 2592
PfeI	GAWTC	9 cut(s)	298, 686, 959, 1258, 1592, 1778, 1879, 2344, 2748
PflMI	CCANNNNNTGG	1 cut(s)	949
PfoI	TCCNGGA	2 cut(s)	496, 1781
PkrI	GCNGC	8 cut(s)	104, 735, 1064, 1507, 1615, 1672, 2143, 2538
PleI	GAGTC	6 cut(s)	14, 513, 1651, 1710, 1858, 2290
PmaCI	CACGTG	1 cut(s)	2316
PmlI	CACGTG	1 cut(s)	2316
PpsI	GAGTC	6 cut(s)	14, 513, 1651, 1710, 1858, 2290
Ppu21I	YACGTR	2 cut(s)	2261, 2316
PpuMI	RGGWCCY	1 cut(s)	1739
Psp124BI	GAGCTC	2 cut(s)	819, 2357
Psp5II	RGGWCCY	1 cut(s)	1739
Psp6I	CCWGG	4 cut(s)	496, 2158, 2347, 2773
PspCI	CACGTG	1 cut(s)	2316
PspFI	CCCAGC	1 cut(s)	736
PspGI	CCWGG	4 cut(s)	496, 2158, 2347, 2773
PspN4I	GGNNCC	4 cut(s)	435, 1464, 1714, 2628
PspPI	GGNCC	5 cut(s)	347, 1252, 1462, 1739, 2389
PspPPI	RGGWCCY	1 cut(s)	1739
PspXI	VCTCGAGB	1 cut(s)	119
PsuI	RGATCY	7 cut(s)	202, 309, 433, 1712, 1785, 2083, 2128
PvuII	CAGCTG	2 cut(s)	736, 1505
RsaI	GTAC	6 cut(s)	485, 1634, 1759, 2155, 2238, 2326
RsaNI	GTAC	6 cut(s)	484, 1633, 1758, 2154, 2237, 2325
RseI	CAYNNNNRTG	3 cut(s)	239, 323, 1697
SacI	GAGCTC	2 cut(s)	819, 2357
SaqAI	TTAA	6 cut(s)	237, 611, 852, 1133, 2310, 2400
SatI	GCNGC	8 cut(s)	103, 734, 1063, 1506, 1614, 1671, 2142, 2537
Sau96I	GGNCC	5 cut(s)	347, 1252, 1462, 1739, 2389
SchI	GAGTC	6 cut(s)	14, 513, 1652, 1711, 1859, 2291
ScrFI	CCNGG	7 cut(s)	498, 1211, 1515, 1783, 2160, 2349, 2775
SduI	GDGCHC	3 cut(s)	819, 1209, 2357
SfaNI	GCATC	4 cut(s)	1084, 1600, 1701, 2079
SfcI	CTRYAG	1 cut(s)	1422
Sfr274I	CTCGAG	2 cut(s)	119, 1687
SfuI	TTCGAA	1 cut(s)	656
SinI	GGWCC	2 cut(s)	1252, 1739
SlaI	CTCGAG	2 cut(s)	119, 1687
SmiMI	CAYNNNNRTG	3 cut(s)	239, 323, 1697
SmlI	CTYRAG	3 cut(s)	119, 1665, 1687
SmoI	CTYRAG	3 cut(s)	119, 1665, 1687
SpeI	ACTAGT	1 cut(s)	2722
SphI	GCATGC	1 cut(s)	98
SsiI	CCGC	2 cut(s)	2137, 2537
SspI	AATATT	2 cut(s)	80, 2593
SspMI	CTAG	5 cut(s)	114, 126, 543, 1647, 2723
SstI	GAGCTC	2 cut(s)	819, 2357
StyD4I	CCNGG	7 cut(s)	496, 1209, 1513, 1781, 2158, 2347, 2773
StyI	CCWWGG	1 cut(s)	350
TaiI	ACGT	4 cut(s)	679, 1847, 2263, 2318
TaqI	TCGA	6 cut(s)	120, 159, 293, 656, 1688, 2751
TatI	WGTACW	1 cut(s)	1757
TauI	GCSGC	1 cut(s)	2539
TfiI	GAWTC	9 cut(s)	298, 686, 959, 1258, 1592, 1778, 1879, 2344, 2748
Tru1I	TTAA	6 cut(s)	237, 611, 852, 1133, 2310, 2400
Tru9I	TTAA	6 cut(s)	237, 611, 852, 1133, 2310, 2400
TscAI	CASTG	8 cut(s)	46, 330, 988, 1351, 1534, 1834, 2338, 2478
TseFI	GTSAC	3 cut(s)	17, 421, 740
TseI	GCWGC	7 cut(s)	102, 733, 1062, 1505, 1613, 1670, 2141
Tsp45I	GTSAC	3 cut(s)	17, 421, 740
TspGWI	ACGGA	3 cut(s)	184, 302, 2096
TspRI	CASTG	8 cut(s)	46, 330, 988, 1351, 1534, 1834, 2338, 2478
Van91I	CCANNNNNTGG	1 cut(s)	949
VpaK11BI	GGWCC	2 cut(s)	1252, 1739
XagI	CCTNNNNNAGG	1 cut(s)	1028
XapI	RAATTY	5 cut(s)	658, 1001, 1473, 1600, 1873
XceI	RCATGY	2 cut(s)	98, 1969
XcmI	CCANNNNNNNNNTGG	2 cut(s)	733, 2011
XhoI	CTCGAG	2 cut(s)	119, 1687
XmnI	GAANNNNTTC	3 cut(s)	1340, 1591, 2592
XspI	CTAG	5 cut(s)	114, 126, 543, 1647, 2723
Zsp2I	ATGCAT	1 cut(s)	2494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.