Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006171

Physical Location & Seq

Genomic Coordinates Forward (+)

29620253 .. 29621194

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGATCAAGAGGAAAACCAATATTTCTATGGTGGGCATGCCAGTAACATATTGTCCAGCCTGGAGGCGTCCATTGGGAAAATCGATGATTTTCTCGCGTTTGAGAGGGGGTTCGTATATGGGGACATGGTATCCTCTGTAAGAGATCCATCTGGACAGATGGGCAGAGTGGTTGGGATTAACATGTTGGTCGATTTGGAGAGTGATAATGGAAATATAATAAAAGATGTAAACTCCAAGAACCTATCAAAGATCCGCTCCATTTCGGTGGGGGACTACGTTGTTTCTGGCCCATGGCTTGGAAGGGTGGATAGAGTGGTTGACCGTGTTACTGTTGTCTTTGACGATGGAACGGAGCGTGAGGTCACTGCTGTGGATCAAGAGAAACTCTTACCTATTTCTCCAAATCTACTTGAAGATCCTCAGTACCCATATTATCCAGGACAGAGAGTGCAGGTCAGGCTCTCAACTGCTTCCAAATCAAGTAGATGGTTATGCAGTAACTGGAGGGAAAATCAAGACGAGGGAACTGTTTGTTCTGTGGAAGGAGGTTTAGTGTATGTTGACTGGCTTGCCTCTTTTCTCATGGGTTGCAATCCGAAAATGCCTGCTCCTCCATGTGTGCTGGATTCGAAAAAATTGAATTTGTTGTCATGTTTCTCTCATGCACACTGGCAGCTTGGTGACTGGTGTATGCTTCAAGTTGCTGATGATAAAGCTGCCATGGAGCAGGCTTTTCAAAATGCTTCTACTTGTGAGATGGTTAAGAAGCACAAGAAATCAGAAAGAGGATTTCGGAGAAGTAACGCGAATTCAAGGGATGAAGTCTTCGTGATCATAAAGACAAGGACCAAAGTTGATGTGGCATGGCAAGATGGTAGCCACTCTTTGGGATTAGATTCACAGACACTAGTTCCGGTAAGCGTTGTGATCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006464 GO:0006807 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010966 GO:0012505 GO:0015698 GO:0016036 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0032879 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0042592 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903795 GO:1903959 GO:2000185

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

314

Amino Acids

34.94

Weight (kDa)

5.49

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tSH3-B_UBE2O	PF23046	90 - 222	2.2e-41	UBE2O, tandem tSH3-B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33770
fragaria_vesca	FvH4_3g09200 FvH4_3g29950
malus_domestica	MD05G1312700.v1.1 MD10G1294500.v1.1
prunus_persica	Prupe.4G047400_v2.0.a1 Prupe.4G047400_v2.0.a1
pyrus_communis	pycom05g29070 pycom05g29080 pycom10g24620 pycom10g24630 pycom10g24640
rosa_chinensis	RchiOBHm_Chr5g0008401
rosa_laevigata	RLG00000031568
rosa_multiflora	Rmu_co8007308.1_g000001 Rmu_co8292313.1_g000001 Rmu_sc0004326.1_g000003 Rmu_sc0028200.1_g000001 Rmu_ssc0000388.1_g000061
rosa_roxburghii	Rroxscaffold_1G00068090
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064200 Rh5BG061400 Rh5CG071300 Rh5DG060200 Rh5DG060300
rosa_wichuraiana	Rw5G005660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	445
AccB7I	CCANNNNNTGG	2 cut(s)	299, 889
AccBSI	CCGCTC	1 cut(s)	258
AccII	CGCG	2 cut(s)	98, 809
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	5 cut(s)	12, 140, 247, 384, 413
AcsI	RAATTY	2 cut(s)	643, 811
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	2 cut(s)	299, 889
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	5 cut(s)	416, 643, 701, 740, 816
AhlI	ACTAGT	1 cut(s)	910
AjnI	CCWGG	2 cut(s)	60, 439
AleI	CACNNNNGTG	1 cut(s)	371
AluBI	AGCT	2 cut(s)	679, 719
AluI	AGCT	2 cut(s)	679, 719
AlwI	GGATC	5 cut(s)	12, 140, 247, 384, 413
AlwNI	CAGNNNCTG	1 cut(s)	504
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	2 cut(s)	676, 719
ApoI	RAATTY	2 cut(s)	643, 811
AspS9I	GGNCC	2 cut(s)	290, 849
AsuHPI	GGTGA	1 cut(s)	695
AsuII	TTCGAA	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	849
BbsI	GAAGAC	1 cut(s)	820
BbvI	GCAGC	2 cut(s)	688, 706
BccI	CCATC	6 cut(s)	154, 157, 341, 483, 754, 869
BciT130I	CCWGG	2 cut(s)	62, 441
BciVI	GTATCC	1 cut(s)	142
BclI	TGATCA	2 cut(s)	834, 930
BcuI	ACTAGT	1 cut(s)	910
BfaI	CTAG	1 cut(s)	911
BfuAI	ACCTGC	1 cut(s)	445
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	2 cut(s)	677, 720
BlsI	GCNGC	2 cut(s)	678, 721
Bme1390I	CCNGG	2 cut(s)	62, 441
Bme18I	GGWCC	1 cut(s)	849
BmgT120I	GGNCC	2 cut(s)	290, 849
BmrFI	CCNGG	2 cut(s)	62, 441
BpiI	GAAGAC	1 cut(s)	820
BpmI	CTGGAG	2 cut(s)	83, 526
Bpu14I	TTCGAA	1 cut(s)	632
Bsa29I	ATCGAT	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	293, 723
BsaWI	WCCGGW	1 cut(s)	916
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 889
Bse1I	ACTGG	5 cut(s)	42, 509, 572, 677, 692
BseBI	CCWGG	2 cut(s)	62, 441
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	293, 723
BseGI	GGATG	1 cut(s)	826
BseLI	CCNNNNNNNGG	2 cut(s)	299, 889
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	5 cut(s)	42, 509, 572, 677, 692
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	2 cut(s)	688, 706
BsgI	GTGCAG	1 cut(s)	473
Bsh1236I	CGCG	2 cut(s)	98, 809
BshFI	GGCC	1 cut(s)	291
BshVI	ATCGAT	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	917
BslFI	GGGAC	2 cut(s)	137, 287
BslI	CCNNNNNNNGG	2 cut(s)	299, 889
BsmFI	GGGAC	2 cut(s)	137, 287
BsnI	GGCC	1 cut(s)	291
Bsp119I	TTCGAA	1 cut(s)	632
Bsp143I	GATC	7 cut(s)	4, 145, 252, 376, 418, 834, 930
Bsp19I	CCATGG	2 cut(s)	293, 723
BspACI	CCGC	1 cut(s)	256
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	1 cut(s)	436
BspDI	ATCGAT	1 cut(s)	84
BspFNI	CGCG	2 cut(s)	98, 809
BspMI	ACCTGC	1 cut(s)	445
BspPI	GGATC	5 cut(s)	12, 140, 247, 384, 413
BspT104I	TTCGAA	1 cut(s)	632
BsrBI	CCGCTC	1 cut(s)	258
BsrI	ACTGG	5 cut(s)	42, 509, 572, 677, 692
BssECI	CCNNGG	2 cut(s)	293, 723
BssMI	GATC	7 cut(s)	4, 145, 252, 376, 418, 834, 930
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	2 cut(s)	293, 723
Bst2UI	CCWGG	2 cut(s)	62, 441
Bst4CI	ACNGT	3 cut(s)	326, 334, 532
BstACI	GRCGYC	1 cut(s)	68
BstBI	TTCGAA	1 cut(s)	632
BstC8I	GCNNGC	4 cut(s)	39, 573, 609, 732
BstDEI	CTNAG	1 cut(s)	423
BstDSI	CCRYGG	2 cut(s)	293, 723
BstF5I	GGATG	1 cut(s)	826
BstFNI	CGCG	2 cut(s)	98, 809
BstKTI	GATC	7 cut(s)	7, 148, 255, 379, 421, 837, 933
BstMBI	GATC	7 cut(s)	4, 145, 252, 376, 418, 834, 930
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstNI	CCWGG	2 cut(s)	62, 441
BstNSI	RCATGY	2 cut(s)	41, 187
BstSCI	CCNGG	2 cut(s)	60, 439
BstUI	CGCG	2 cut(s)	98, 809
BstV1I	GCAGC	2 cut(s)	688, 706
BstV2I	GAAGAC	1 cut(s)	820
BstX2I	RGATCY	3 cut(s)	145, 252, 418
BstXI	CCANNNNNNTGG	1 cut(s)	268
BstYI	RGATCY	3 cut(s)	145, 252, 418
Bsu15I	ATCGAT	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	291
BsuTUI	ATCGAT	1 cut(s)	84
BtgI	CCRYGG	2 cut(s)	293, 723
BtsCI	GGATG	1 cut(s)	826
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	366, 670
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	4 cut(s)	39, 573, 609, 732
CaiI	CAGNNNCTG	1 cut(s)	504
Cfr13I	GGNCC	2 cut(s)	290, 849
ClaI	ATCGAT	1 cut(s)	84
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	427
CviJI	RGCY	9 cut(s)	60, 291, 298, 463, 571, 679, 719, 734, 882
CviKI_1	RGCY	9 cut(s)	60, 291, 298, 463, 571, 679, 719, 734, 882
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	7 cut(s)	6, 147, 254, 378, 420, 836, 932
DpnII	GATC	7 cut(s)	4, 145, 252, 376, 418, 834, 930
Eco130I	CCWWGG	2 cut(s)	293, 723
Eco47I	GGWCC	1 cut(s)	849
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	2 cut(s)	60, 439
EcoT14I	CCWWGG	2 cut(s)	293, 723
ErhI	CCWWGG	2 cut(s)	293, 723
FaqI	GGGAC	2 cut(s)	137, 287
FbaI	TGATCA	2 cut(s)	834, 930
Fnu4HI	GCNGC	2 cut(s)	677, 720
FokI	GGATG	1 cut(s)	833
Fsp4HI	GCNGC	2 cut(s)	677, 720
FspBI	CTAG	1 cut(s)	911
GluI	GCNGC	2 cut(s)	677, 720
GsuI	CTGGAG	2 cut(s)	83, 526
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	1 cut(s)	917
HgaI	GACGC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	68
HincII	GTYRAC	2 cut(s)	322, 565
HindII	GTYRAC	2 cut(s)	322, 565
HinfI	GANTC	2 cut(s)	629, 899
HpaII	CCGG	1 cut(s)	917
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	3 cut(s)	232, 322, 565
Hpy188I	TCNGA	3 cut(s)	600, 784, 798
Hpy188III	TCNNGA	6 cut(s)	8, 153, 380, 518, 832, 934
Hpy8I	GTNNAC	3 cut(s)	232, 322, 565
HpyAV	CCTTC	2 cut(s)	297, 539
HpyCH4III	ACNGT	3 cut(s)	326, 334, 532
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	4 cut(s)	454, 498, 594, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	68
Ksp22I	TGATCA	2 cut(s)	834, 930
Kzo9I	GATC	7 cut(s)	4, 145, 252, 376, 418, 834, 930
LmnI	GCTCC	4 cut(s)	263, 355, 616, 727
Lsp1109I	GCAGC	2 cut(s)	688, 706
MaeI	CTAG	1 cut(s)	911
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	6 cut(s)	44, 328, 364, 500, 683, 803
MalI	GATC	7 cut(s)	6, 147, 254, 378, 420, 836, 932
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	7 cut(s)	4, 145, 252, 376, 418, 834, 930
MboII	GAAGA	2 cut(s)	428, 820
MflI	RGATCY	3 cut(s)	145, 252, 418
MluCI	AATT	3 cut(s)	638, 643, 811
MseI	TTAA	2 cut(s)	180, 765
MslI	CAYNNNNRTG	2 cut(s)	266, 371
MspI	CCGG	1 cut(s)	917
MspR9I	CCNGG	2 cut(s)	62, 441
MvaI	CCWGG	2 cut(s)	62, 441
MvnI	CGCG	2 cut(s)	98, 809
MwoI	GCNNNNNNNGC	1 cut(s)	460
NcoI	CCATGG	2 cut(s)	293, 723
NdeII	GATC	7 cut(s)	4, 145, 252, 376, 418, 834, 930
NmuCI	GTSAC	2 cut(s)	364, 683
NspI	RCATGY	2 cut(s)	41, 187
NspV	TTCGAA	1 cut(s)	632
OliI	CACNNNNGTG	1 cut(s)	371
PaeI	GCATGC	1 cut(s)	41
PciI	ACATGT	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	629, 899
PflMI	CCANNNNNTGG	2 cut(s)	299, 889
PfoI	TCCNGGA	1 cut(s)	439
PkrI	GCNGC	2 cut(s)	678, 721
PscI	ACATGT	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	60, 439
PspGI	CCWGG	2 cut(s)	60, 439
PspPI	GGNCC	2 cut(s)	290, 849
PstNI	CAGNNNCTG	1 cut(s)	504
PsuI	RGATCY	3 cut(s)	145, 252, 418
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	2 cut(s)	266, 371
SaqAI	TTAA	2 cut(s)	180, 765
SatI	GCNGC	2 cut(s)	677, 720
Sau3AI	GATC	7 cut(s)	4, 145, 252, 376, 418, 834, 930
Sau96I	GGNCC	2 cut(s)	290, 849
ScrFI	CCNGG	2 cut(s)	62, 441
SetI	ASST	8 cut(s)	246, 282, 366, 397, 459, 553, 681, 721
SfuI	TTCGAA	1 cut(s)	632
SinI	GGWCC	1 cut(s)	849
SmiMI	CAYNNNNRTG	2 cut(s)	266, 371
SpeI	ACTAGT	1 cut(s)	910
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	3 cut(s)	638, 643, 811
SsiI	CCGC	1 cut(s)	256
SspI	AATATT	1 cut(s)	23
SspMI	CTAG	1 cut(s)	911
StyD4I	CCNGG	2 cut(s)	60, 439
StyI	CCWWGG	2 cut(s)	293, 723
TaaI	ACNGT	3 cut(s)	326, 334, 532
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	3 cut(s)	84, 192, 632
TasI	AATT	3 cut(s)	638, 643, 811
TfiI	GAWTC	2 cut(s)	629, 899
Tru1I	TTAA	2 cut(s)	180, 765
Tru9I	TTAA	2 cut(s)	180, 765
TscAI	CASTG	2 cut(s)	373, 677
TseFI	GTSAC	2 cut(s)	364, 683
TseI	GCWGC	2 cut(s)	676, 719
Tsp45I	GTSAC	2 cut(s)	364, 683
TspDTI	ATGAA	1 cut(s)	837
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	2 cut(s)	373, 677
Van91I	CCANNNNNTGG	2 cut(s)	299, 889
VpaK11BI	GGWCC	1 cut(s)	849
XapI	RAATTY	2 cut(s)	643, 811
XceI	RCATGY	2 cut(s)	41, 187
XcmI	CCANNNNNNNNNTGG	2 cut(s)	26, 859
XspI	CTAG	1 cut(s)	911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.