pycom05g29080

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
29621255 .. 29623697
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g29080.4

Sequence Viewer

Length: 1698 bp
ATGTCTAGCAGCCAAAAATGGGGTGTCGTGAGGGGTGTGGATGCAAAGGAACATACAGTAAACGTGCAATGGAAAACTATCACTGCACCTGAAGAAAAGTACTCCAAGGGAGAGCAGTTGGAGGAAACTGTAAGTGCTTATGAACTGGTTGAGCACCCAGATTACTCCTACTGTTTTGGCGATTGTGTGTTCAGGTTGGTCCAGAATCAGTTTGATGAACAAGCGGATAAAAACTGTCCGCACACAAAGATTGACATGAGCGAGGAGGCTGCTTCTGATGACAAGAACTGTGGTGGAGATCAAGAGTATTACACTGATAAACGCTACCTATCTCACATTGGAAATGTTATAGGCTTCAAGGATGGAGCTGTGGAAGTGAGATGGGCTACTGGTATTACAAGCAAGGTGCCCCCTTATGAAATTTTCCGGTTTGACAAACATGAAGTTTCAGCTGCACTCCCTGCAGAAGATGACATCGAGGACTTGAACCGAGAGATGATTCAAAATGAGAAGCAACCTTCTAACCAGAACGGAAAGGGTTTATTGAATTTGGATGATGTCAGTAAAGTTGGAAAAGATTACACAAGGGAGTCTAGTTCCTCTTTCCTTCCTCAAGCTGCCATTGGATTTTTCACTAGCATAGCTGCGAGTCTCTTTGGATCCCATGAGTCTGTGCCGCTTTCAGCTCCTTCTCCATCAGTCTGTATTTCTGAAGTTGGAAATGAATCTGAGATTCCCCATGAGAAAGGAATAGCAGAAACTTGTGACCTCTTTACTGAGCAACAGTCAACGACTGAGCTGGAGAGGTTTGAGGGGAATAGCATTCCACATTCAAAAGCTAATGACAGTGTAGATCAGTTTAGACAGTTTCACATAATTGCTGATTGCACCGACCACCATTTTCATGGTGCAAACAAGGAGTTGGCATTGTCTCAGGTGAAAAGAGGCTGGATGAAAAGGGTTCAACAAGAGTGGAGCATCTTCGAGAAAGATCTGCCTGAACAAATCTATGTCCGCGCCTTCGAGGAAAGGATGGATCTACTGCGAGCAGCCATTGTTGGTGCACCTGGAACTCCATATCATGACGGGCTTTTCTTCTTTGATATTTATCTTCCACCAGAATATCCTCATGAACCGCCTATGGTACACTATACTTCTGGTGGGCTACGTGTGAACCCTAACTTGTACGAGTCCGGAAAGGTCTGTCTCAGTCTTCTTAATACATGGACGGGCACAGGAACTGAAGTTTGGAATCCAGGGGGCTCCACCATTCTTCAAGTTCTTCTCTCCCTTCAAGCCCTCGTGCTTAACGACAAGCCATATTTCAATGAAGCTGGGTATGATCAACAGATAGGAAGAACCGAGGGAGAGAAAAACTCTGTAAGCTACAACGAAAATGCATTCCTCATGACTTGCAAGTCCATGCTCTACACACTCCATAAGCCACCTAAGCATTTCGAGGAGCTTGTGATCGAACACTTCACTCGCCGCTGCCAAAATATTCTAATGGCGTGTAAGGCGTATATGGACGGGGCTCCAGTAGGGTGTGCTGTTGGTTTCGAGAAAACTGAAGATAAAGACGGTAAGGGAAGCTCTACCGGGTTCAAAATCATGCTCTCTAAGCTCTTACCAAAATTGGTTGAGGCATTTTCCGCCAAGGGAATTGACTGCAACCAGTTCATCGGGCCGGAGAAATGA

Protein Analysis

566

Amino Acids

63.35

Weight (kDa)

5.06

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1417
AccB1I GGYRCC 1 cut(s) 406
AccII CGCG 1 cut(s) 1017
AccIII TCCGGA 1 cut(s) 1193
AciI CCGC 7 cut(s) 224, 239, 677, 1015, 1136, 1489, 1653
AclWI GGATC 3 cut(s) 654, 667, 1044
AcsI RAATTY 2 cut(s) 420, 547
AcuI CTGAAG 4 cut(s) 111, 732, 1263, 1590
AfaI GTAC 3 cut(s) 101, 1146, 1187
AfiI CCNNNNNNNGG 1 cut(s) 19
AflIII ACRYGT 1 cut(s) 1168
AjnI CCWGG 2 cut(s) 1066, 1255
AjuI GAANNNNNNNTTGG 2 cut(s) 1231, 1263
Alw21I GWGCWC 2 cut(s) 156, 1066
Alw26I GTCTC 3 cut(s) 656, 936, 1211
Alw44I GTGCAC 1 cut(s) 1062
AlwI GGATC 3 cut(s) 654, 667, 1044
AlwNI CAGNNNCTG 1 cut(s) 1241
Aor13HI TCCGGA 1 cut(s) 1193
AoxI GGCC 1 cut(s) 1685
ApaLI GTGCAC 1 cut(s) 1062
ApeKI GCWGC 7 cut(s) 9, 269, 452, 617, 644, 1049, 1491
ApoI RAATTY 2 cut(s) 420, 547
AspLEI GCGC 1 cut(s) 1019
AspS9I GGNCC 2 cut(s) 199, 1685
AsuC2I CCSGG 1 cut(s) 1600
AsuHPI GGTGA 1 cut(s) 949
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 3 cut(s) 411, 1066, 1235
BamHI GGATCC 1 cut(s) 659
BanI GGYRCC 1 cut(s) 406
BanII GRGCYC 2 cut(s) 1265, 1537
BauI CACGAG 1 cut(s) 1301
BbsI GAAGAC 1 cut(s) 1205
Bbv12I GWGCWC 2 cut(s) 156, 1066
BbvI GCAGC 7 cut(s) 21, 256, 439, 604, 631, 1061, 1478
BccI CCATC 4 cut(s) 356, 375, 703, 1027
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 2 cut(s) 1068, 1257
BclI TGATCA 1 cut(s) 1342
BcnI CCSGG 1 cut(s) 1600
BcoDI GTCTC 3 cut(s) 656, 936, 1211
BfaI CTAG 3 cut(s) 6, 594, 636
BfmI CTRYAG 1 cut(s) 462
BglII AGATCT 1 cut(s) 991
BisI GCNGC 9 cut(s) 10, 270, 453, 618, 645, 677, 1050, 1489, 1492
BlsI GCNGC 9 cut(s) 11, 271, 454, 619, 646, 678, 1051, 1490, 1493
BmcAI AGTACT 1 cut(s) 101
Bme1390I CCNGG 3 cut(s) 1068, 1257, 1600
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 2 cut(s) 199, 1685
BmiI GGNNCC 4 cut(s) 408, 661, 1264, 1536
BmrFI CCNGG 3 cut(s) 1068, 1257, 1600
BmsI GCATC 2 cut(s) 31, 987
BpiI GAAGAC 1 cut(s) 1205
BplI GAGNNNNNCTC 2 cut(s) 1361, 1393
BpmI CTGGAG 2 cut(s) 821, 1521
Bpu10I CCTNAGC 1 cut(s) 1449
BpuEI CTTGAG 1 cut(s) 597
BpuMI CCSGG 1 cut(s) 1600
BsaAI YACGTR 1 cut(s) 1169
BsaBI GATNNNNATC 1 cut(s) 1107
BsaJI CCNNGG 4 cut(s) 105, 1256, 1362, 1656
BsaWI WCCGGW 2 cut(s) 426, 1193
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse1I ACTGG 4 cut(s) 150, 394, 1538, 1675
Bse3DI GCAATG 1 cut(s) 74
Bse8I GATNNNNATC 1 cut(s) 1107
BseAI TCCGGA 1 cut(s) 1193
BseBI CCWGG 2 cut(s) 1068, 1257
BseDI CCNNGG 4 cut(s) 105, 1256, 1362, 1656
BseGI GGATG 5 cut(s) 46, 367, 559, 957, 1038
BseJI GATNNNNATC 1 cut(s) 1107
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMI GCAATG 1 cut(s) 74
BseMII CTCAG 5 cut(s) 720, 768, 786, 947, 1222
BseNI ACTGG 4 cut(s) 150, 394, 1538, 1675
BseRI GAGGAG 2 cut(s) 278, 1475
BseSI GKGCMC 3 cut(s) 411, 1066, 1235
BseXI GCAGC 7 cut(s) 21, 256, 439, 604, 631, 1061, 1478
BseYI CCCAGC 1 cut(s) 1334
BsgI GTGCAG 2 cut(s) 69, 438
Bsh1236I CGCG 1 cut(s) 1017
BshFI GGCC 1 cut(s) 1687
BshNI GGYRCC 1 cut(s) 406
BsiHKAI GWGCWC 2 cut(s) 156, 1066
BsiSI CCGG 4 cut(s) 427, 1194, 1599, 1688
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 3 cut(s) 656, 936, 1211
BsmI GAATGC 2 cut(s) 822, 1400
BsnI GGCC 1 cut(s) 1687
Bsp1286I GDGCHC 6 cut(s) 156, 411, 1066, 1235, 1265, 1537
Bsp13I TCCGGA 1 cut(s) 1193
Bsp143I GATC 7 cut(s) 298, 659, 853, 991, 1036, 1342, 1470
BspACI CCGC 7 cut(s) 224, 239, 677, 1015, 1136, 1489, 1653
BspANI GGCC 1 cut(s) 1687
BspCNI CTCAG 5 cut(s) 721, 769, 787, 946, 1221
BspEI TCCGGA 1 cut(s) 1193
BspFNI CGCG 1 cut(s) 1017
BspHI TCATGA 3 cut(s) 1081, 1129, 1407
BspLI GGNNCC 4 cut(s) 408, 661, 1264, 1536
BspMAI CTGCAG 1 cut(s) 466
BspPI GGATC 3 cut(s) 654, 667, 1044
BspT107I GGYRCC 1 cut(s) 406
BsrDI GCAATG 1 cut(s) 74
BsrI ACTGG 4 cut(s) 150, 394, 1538, 1675
BssECI CCNNGG 4 cut(s) 105, 1256, 1362, 1656
BssMI GATC 7 cut(s) 298, 659, 853, 991, 1036, 1342, 1470
BssSI CACGAG 1 cut(s) 1301
BssT1I CCWWGG 2 cut(s) 105, 1656
Bst2BI CACGAG 1 cut(s) 1301
Bst2UI CCWGG 2 cut(s) 1068, 1257
Bst4CI ACNGT 9 cut(s) 58, 130, 173, 236, 290, 786, 848, 867, 1583
BstAPI GCANNNNNTGC 1 cut(s) 461
BstBAI YACGTR 1 cut(s) 1169
BstC8I GCNNGC 1 cut(s) 1047
BstDEI CTNAG 7 cut(s) 729, 777, 795, 933, 1208, 1449, 1620
BstF5I GGATG 5 cut(s) 46, 367, 559, 957, 1038
BstFNI CGCG 1 cut(s) 1017
BstHHI GCGC 1 cut(s) 1019
BstKTI GATC 7 cut(s) 301, 662, 856, 994, 1039, 1345, 1473
BstMAI GTCTC 3 cut(s) 656, 936, 1211
BstMBI GATC 7 cut(s) 298, 659, 853, 991, 1036, 1342, 1470
BstMWI GCNNNNNNNGC 5 cut(s) 461, 1450, 1517, 1621, 1652
BstNI CCWGG 2 cut(s) 1068, 1257
BstSCI CCNGG 3 cut(s) 1066, 1255, 1598
BstSFI CTRYAG 1 cut(s) 462
BstSLI GKGCMC 3 cut(s) 411, 1066, 1235
BstUI CGCG 1 cut(s) 1017
BstV1I GCAGC 7 cut(s) 21, 256, 439, 604, 631, 1061, 1478
BstV2I GAAGAC 1 cut(s) 1205
BstX2I RGATCY 3 cut(s) 659, 991, 1036
BstXI CCANNNNNNTGG 1 cut(s) 905
BstYI RGATCY 3 cut(s) 659, 991, 1036
BsuRI GGCC 1 cut(s) 1687
BtsCI GGATG 5 cut(s) 46, 367, 559, 957, 1038
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 3 cut(s) 81, 312, 853
Cac8I GCNNGC 1 cut(s) 1047
CaiI CAGNNNCTG 1 cut(s) 1241
CciI TCATGA 3 cut(s) 1081, 1129, 1407
CfoI GCGC 1 cut(s) 1019
Cfr13I GGNCC 2 cut(s) 199, 1685
Csp6I GTAC 3 cut(s) 100, 1145, 1186
CspCI CAANNNNNGTGG 4 cut(s) 271, 306, 953, 988
CviQI GTAC 3 cut(s) 100, 1145, 1186
DdeI CTNAG 7 cut(s) 729, 777, 795, 933, 1208, 1449, 1620
DpnI GATC 7 cut(s) 300, 661, 855, 993, 1038, 1344, 1472
DpnII GATC 7 cut(s) 298, 659, 853, 991, 1036, 1342, 1470
DrdI GACNNNNNNGTC 1 cut(s) 1417
DseDI GACNNNNNNGTC 1 cut(s) 1417
EciI GGCGGA 1 cut(s) 1642
Eco130I CCWWGG 2 cut(s) 105, 1656
Eco24I GRGCYC 2 cut(s) 1265, 1537
Eco47I GGWCC 1 cut(s) 199
Eco57I CTGAAG 4 cut(s) 111, 732, 1263, 1590
EcoRII CCWGG 2 cut(s) 1066, 1255
EcoT14I CCWWGG 2 cut(s) 105, 1656
EcoT22I ATGCAT 1 cut(s) 1402
EcoT38I GRGCYC 2 cut(s) 1265, 1537
ErhI CCWWGG 2 cut(s) 105, 1656
FbaI TGATCA 1 cut(s) 1342
Fnu4HI GCNGC 9 cut(s) 10, 270, 453, 618, 645, 677, 1050, 1489, 1492
FokI GGATG 5 cut(s) 53, 374, 566, 964, 1045
FriOI GRGCYC 2 cut(s) 1265, 1537
Fsp4HI GCNGC 9 cut(s) 10, 270, 453, 618, 645, 677, 1050, 1489, 1492
FspBI CTAG 3 cut(s) 6, 594, 636
GlaI GCGC 1 cut(s) 1018
GluI GCNGC 9 cut(s) 10, 270, 453, 618, 645, 677, 1050, 1489, 1492
GsaI CCCAGC 1 cut(s) 1338
GsuI CTGGAG 2 cut(s) 821, 1521
HaeIII GGCC 1 cut(s) 1687
HapII CCGG 4 cut(s) 427, 1194, 1599, 1688
HhaI GCGC 1 cut(s) 1019
Hin6I GCGC 1 cut(s) 1017
HinP1I GCGC 1 cut(s) 1017
HincII GTYRAC 1 cut(s) 789
HindII GTYRAC 1 cut(s) 789
HinfI GANTC 9 cut(s) 205, 499, 590, 649, 668, 725, 733, 1190, 1252
HpaII CCGG 4 cut(s) 427, 1194, 1599, 1688
HphI GGTGA 1 cut(s) 949
Hpy166II GTNNAC 5 cut(s) 61, 789, 1064, 1147, 1174
Hpy188I TCNGA 3 cut(s) 277, 712, 730
Hpy188III TCNNGA 9 cut(s) 28, 202, 302, 985, 1082, 1130, 1194, 1408, 1561
Hpy8I GTNNAC 5 cut(s) 61, 789, 1064, 1147, 1174
HpyAV CCTTC 5 cut(s) 528, 617, 699, 1030, 1301
HpyCH4III ACNGT 9 cut(s) 58, 130, 173, 236, 290, 786, 848, 867, 1583
HpyCH4IV ACGT 2 cut(s) 63, 1168
HpyF10VI GCNNNNNNNGC 5 cut(s) 461, 1450, 1517, 1621, 1652
HpyF3I CTNAG 7 cut(s) 729, 777, 795, 933, 1208, 1449, 1620
HpySE526I ACGT 2 cut(s) 63, 1168
HspAI GCGC 1 cut(s) 1017
Kpn2I TCCGGA 1 cut(s) 1193
Ksp22I TGATCA 1 cut(s) 1342
Kzo9I GATC 7 cut(s) 298, 659, 853, 991, 1036, 1342, 1470
LmnI GCTCC 6 cut(s) 365, 691, 975, 1268, 1462, 1540
Lsp1109I GCAGC 7 cut(s) 21, 256, 439, 604, 631, 1061, 1478
LweI GCATC 2 cut(s) 31, 987
MaeI CTAG 3 cut(s) 6, 594, 636
MaeII ACGT 2 cut(s) 63, 1168
MaeIII GTNAC 1 cut(s) 764
MalI GATC 7 cut(s) 300, 661, 855, 993, 1038, 1344, 1472
MboI GATC 7 cut(s) 298, 659, 853, 991, 1036, 1342, 1470
MflI RGATCY 3 cut(s) 659, 991, 1036
MhlI GDGCHC 6 cut(s) 156, 411, 1066, 1235, 1265, 1537
MluCI AATT 5 cut(s) 420, 547, 876, 1634, 1662
MlyI GAGTC 4 cut(s) 599, 658, 677, 1199
MmeI TCCRAC 3 cut(s) 99, 550, 697
Mph1103I ATGCAT 1 cut(s) 1402
MroI TCCGGA 1 cut(s) 1193
MseI TTAA 2 cut(s) 1218, 1308
MslI CAYNNNNRTG 1 cut(s) 903
MspA1I CMGCKG 2 cut(s) 452, 1491
MspI CCGG 4 cut(s) 427, 1194, 1599, 1688
MspR9I CCNGG 3 cut(s) 1068, 1257, 1600
Mva1269I GAATGC 2 cut(s) 822, 1400
MvaI CCWGG 2 cut(s) 1068, 1257
MvnI CGCG 1 cut(s) 1017
MwoI GCNNNNNNNGC 5 cut(s) 461, 1450, 1517, 1621, 1652
NciI CCSGG 1 cut(s) 1600
NdeII GATC 7 cut(s) 298, 659, 853, 991, 1036, 1342, 1470
NlaIV GGNNCC 4 cut(s) 408, 661, 1264, 1536
NmuCI GTSAC 1 cut(s) 764
NsiI ATGCAT 1 cut(s) 1402
PagI TCATGA 3 cut(s) 1081, 1129, 1407
PcsI WCGNNNNNNNCGW 1 cut(s) 1308
PctI GAATGC 2 cut(s) 822, 1400
PfeI GAWTC 5 cut(s) 205, 499, 725, 733, 1252
PkrI GCNGC 9 cut(s) 11, 271, 454, 619, 646, 678, 1051, 1490, 1493
PleI GAGTC 4 cut(s) 598, 657, 676, 1198
PpsI GAGTC 4 cut(s) 598, 657, 676, 1198
Ppu21I YACGTR 1 cut(s) 1169
Psp6I CCWGG 2 cut(s) 1066, 1255
PspFI CCCAGC 1 cut(s) 1334
PspGI CCWGG 2 cut(s) 1066, 1255
PspN4I GGNNCC 4 cut(s) 408, 661, 1264, 1536
PspPI GGNCC 2 cut(s) 199, 1685
PstI CTGCAG 1 cut(s) 466
PstNI CAGNNNCTG 1 cut(s) 1241
PsuI RGATCY 3 cut(s) 659, 991, 1036
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 3 cut(s) 101, 1146, 1187
RsaNI GTAC 3 cut(s) 100, 1145, 1186
RseI CAYNNNNRTG 1 cut(s) 903
SaqAI TTAA 2 cut(s) 1218, 1308
SatI GCNGC 9 cut(s) 10, 270, 453, 618, 645, 677, 1050, 1489, 1492
Sau3AI GATC 7 cut(s) 298, 659, 853, 991, 1036, 1342, 1470
Sau96I GGNCC 2 cut(s) 199, 1685
ScaI AGTACT 1 cut(s) 101
SchI GAGTC 4 cut(s) 599, 658, 677, 1199
ScrFI CCNGG 3 cut(s) 1068, 1257, 1600
SduI GDGCHC 6 cut(s) 156, 411, 1066, 1235, 1265, 1537
SfaNI GCATC 2 cut(s) 31, 987
SfcI CTRYAG 1 cut(s) 462
SinI GGWCC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 903
SmlI CTYRAG 1 cut(s) 612
SmoI CTYRAG 1 cut(s) 612
Sse9I AATT 5 cut(s) 420, 547, 876, 1634, 1662
SsiI CCGC 7 cut(s) 224, 239, 677, 1015, 1136, 1489, 1653
SspI AATATT 1 cut(s) 1501
SspMI CTAG 3 cut(s) 6, 594, 636
StyD4I CCNGG 3 cut(s) 1066, 1255, 1598
StyI CCWWGG 2 cut(s) 105, 1656
TaaI ACNGT 9 cut(s) 58, 130, 173, 236, 290, 786, 848, 867, 1583
TaiI ACGT 2 cut(s) 66, 1171
TaqI TCGA 6 cut(s) 477, 984, 1023, 1458, 1473, 1560
TasI AATT 5 cut(s) 420, 547, 876, 1634, 1662
TatI WGTACW 1 cut(s) 99
TauI GCSGC 2 cut(s) 679, 1491
TfiI GAWTC 5 cut(s) 205, 499, 725, 733, 1252
Tru1I TTAA 2 cut(s) 1218, 1308
Tru9I TTAA 2 cut(s) 1218, 1308
TscAI CASTG 3 cut(s) 88, 319, 853
TseFI GTSAC 1 cut(s) 764
TseI GCWGC 7 cut(s) 9, 269, 452, 617, 644, 1049, 1491
Tsp45I GTSAC 1 cut(s) 764
TspGWI ACGGA 1 cut(s) 546
TspRI CASTG 3 cut(s) 88, 319, 853
VneI GTGCAC 1 cut(s) 1062
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 2 cut(s) 420, 547
XcmI CCANNNNNNNNNTGG 1 cut(s) 902
XspI CTAG 3 cut(s) 6, 594, 636
ZrmI AGTACT 1 cut(s) 101
Zsp2I ATGCAT 1 cut(s) 1402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.